| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is hldE [H]
Identifier: 146342026
GI number: 146342026
Start: 5374471
End: 5375973
Strand: Direct
Name: hldE [H]
Synonym: BRADO5164
Alternate gene names: 146342026
Gene position: 5374471-5375973 (Clockwise)
Preceding gene: 146342025
Following gene: 146342027
Centisome position: 72.08
GC content: 64.14
Gene sequence:
>1503_bases TTGGACCATATAATTGCAGTTCCGGTCGATGCTGTCTGCGAGAAGATTCGCGCGTCCTGTGAATCCGGACAGACGATCGC CTTCGTGTCGGGCAACTTCAACGTCGTGCACCCCGGACATTTACGGCTCTTGAAATTCGCGGCCGAGCAGGCCGACGTTC TCATCGTCGGCGTCAATCCGGATTCGACGCCGGGCGTCACCCTCGCTCAGGACATGCGGCTGGAAAATGTGCGGTCGATC TCCTTTGTGCATCATGCCGTGCGCCTGGAAGCTTCCGCATCCGACTTCATCTCGCACCTGAAACCGACCGTCGTCGTCAA GGGCAAGGAGTTCGAGGACCGCGCCAACGCCGAGCAAGATGCTGTGGACGCATATGGCGGCCGCCTGATCTTTTCGTCCG GTGAGTTGCGCTTCGCCTCTCTGTCGCTCTTGGAACGCGACGCGAACATCGACATCTCGACGGTCCGCAAGCCGCTGGAG TTTCCCAAGCGCCACGGCTTCGAGATCTCGAATCTGAAGGACCTGCTCGGCAAGCTCTCGGGCATGCGGGTGGCCGTCAT CGGCGACCTCATCGTCGACGAATATGTGACCTGCGATGCGGTCGGCATGTCCCAGGAGGATCCGACCATCGTCGTGACGC CGCTCATGACCCGCACCTTCGTCGGCGGCGCCGGTGCGGTTGCGGCGCATGCGCACGGCCTCGGCGCCGACGTCAAGTTC TTCACCCTGGTCGGCGACGACGAAGCCGCGCGGTTTGCGCGCAGCACGCTCGAGCAGCACGGCGTGAACTTCAACGCCTT CACCGATCAGAGCCGTCCGACGACGCGCAAGCAGCGTTTTCGGGCGCTCAACAAGACGCTGCTGCGCGTCAATCATCTGC GCCAGCATGCCTCCGACGCCGACCTTCAGCGGCAGATGCTGACCTCTGTCGAGCGCGCCTTGAAGACCTGCGATCTGCTG CTGTTCTCCTGCTTCAACTATGGCTGTCTGCCGCAGGATCTGGTCGACGCAATCGCCGATCGCGCCCGTGCCCAGGGCGT GATGATGGCGGCCGACAGCCAGGTGTCATCGCAGACCGGCGACGTCTCCCGCTTCAAGGGCATGACCTTGCTGACGCCAA CCGAGCGCGAGGCGCGCGTCGCGCTGAACGACTTCATCTCCGGCCTCGCCGTCATCAGCGAGCGACTGGTCGAGCGCGCC CGCACCAAGAACCTCGTGATCACGCTCGGCGCCGAGGGCGCGCTGATCAACACCATGGCCGAAGGCATCTTCACCTCCGA CCGCTTGCCCGCGTTCAACCCGTCGCCCAAGGACGTCTCCGGCGCGGGCGACAGCTTTTTCATGGCCTGCTCGATGGGCC TGCGCGCCGGCGCCGATATCTGGCAGGCGTCTTATCTCGGCTCGCTGGCCGCCGCCCTCCAGGTCTCCCGAGTCGGCAAC CTGCCGCTGACGACCGCCGAACTGGTGCGCGAGATCGACGAGACGGGGTTCAGCCAGGAATAA
Upstream 100 bases:
>100_bases CAACCGTTTGGACTATTGATCCGATTCTGCCAGGCCCCTGAGAAGGGGCCCTGCGCCAACGCGCAGATCGTCACCCACAG CCGCCGCCGGAGACCGATTT
Downstream 100 bases:
>100_bases ATCCCAGAGTAGGATGCCGTCATGCGTGCCCTTCTGCTCGCCGCTGGCATTGGAAGCCGGCTGCGCCCGCTGACCAATAC GACGCCAAAATGCCTGGTGC
Product: putative bifunctional enzyme (sugar kinase/cytidylyltransferase)
Products: NA
Alternate protein names: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 7-phosphotransferase; D-beta-D-heptose 1-phosphate adenosyltransferase [H]
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MDHIIAVPVDAVCEKIRASCESGQTIAFVSGNFNVVHPGHLRLLKFAAEQADVLIVGVNPDSTPGVTLAQDMRLENVRSI SFVHHAVRLEASASDFISHLKPTVVVKGKEFEDRANAEQDAVDAYGGRLIFSSGELRFASLSLLERDANIDISTVRKPLE FPKRHGFEISNLKDLLGKLSGMRVAVIGDLIVDEYVTCDAVGMSQEDPTIVVTPLMTRTFVGGAGAVAAHAHGLGADVKF FTLVGDDEAARFARSTLEQHGVNFNAFTDQSRPTTRKQRFRALNKTLLRVNHLRQHASDADLQRQMLTSVERALKTCDLL LFSCFNYGCLPQDLVDAIADRARAQGVMMAADSQVSSQTGDVSRFKGMTLLTPTEREARVALNDFISGLAVISERLVERA RTKNLVITLGAEGALINTMAEGIFTSDRLPAFNPSPKDVSGAGDSFFMACSMGLRAGADIWQASYLGSLAAALQVSRVGN LPLTTAELVREIDETGFSQE
Sequences:
>Translated_500_residues MDHIIAVPVDAVCEKIRASCESGQTIAFVSGNFNVVHPGHLRLLKFAAEQADVLIVGVNPDSTPGVTLAQDMRLENVRSI SFVHHAVRLEASASDFISHLKPTVVVKGKEFEDRANAEQDAVDAYGGRLIFSSGELRFASLSLLERDANIDISTVRKPLE FPKRHGFEISNLKDLLGKLSGMRVAVIGDLIVDEYVTCDAVGMSQEDPTIVVTPLMTRTFVGGAGAVAAHAHGLGADVKF FTLVGDDEAARFARSTLEQHGVNFNAFTDQSRPTTRKQRFRALNKTLLRVNHLRQHASDADLQRQMLTSVERALKTCDLL LFSCFNYGCLPQDLVDAIADRARAQGVMMAADSQVSSQTGDVSRFKGMTLLTPTEREARVALNDFISGLAVISERLVERA RTKNLVITLGAEGALINTMAEGIFTSDRLPAFNPSPKDVSGAGDSFFMACSMGLRAGADIWQASYLGSLAAALQVSRVGN LPLTTAELVREIDETGFSQE >Mature_500_residues MDHIIAVPVDAVCEKIRASCESGQTIAFVSGNFNVVHPGHLRLLKFAAEQADVLIVGVNPDSTPGVTLAQDMRLENVRSI SFVHHAVRLEASASDFISHLKPTVVVKGKEFEDRANAEQDAVDAYGGRLIFSSGELRFASLSLLERDANIDISTVRKPLE FPKRHGFEISNLKDLLGKLSGMRVAVIGDLIVDEYVTCDAVGMSQEDPTIVVTPLMTRTFVGGAGAVAAHAHGLGADVKF FTLVGDDEAARFARSTLEQHGVNFNAFTDQSRPTTRKQRFRALNKTLLRVNHLRQHASDADLQRQMLTSVERALKTCDLL LFSCFNYGCLPQDLVDAIADRARAQGVMMAADSQVSSQTGDVSRFKGMTLLTPTEREARVALNDFISGLAVISERLVERA RTKNLVITLGAEGALINTMAEGIFTSDRLPAFNPSPKDVSGAGDSFFMACSMGLRAGADIWQASYLGSLAAALQVSRVGN LPLTTAELVREIDETGFSQE
Specific function: Catalyzes the ADP transfer to D-glycero-D-manno-heptose 1-phosphate, yielding ADP-D,D-heptose [H]
COG id: COG2870
COG function: function code M; ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789432, Length=325, Percent_Identity=27.3846153846154, Blast_Score=86, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023030 - InterPro: IPR011611 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR011913 - InterPro: IPR011914 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2; PF00294 PfkB [H]
EC number: 2.7.-.-
Molecular weight: Translated: 54153; Mature: 54153
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHIIAVPVDAVCEKIRASCESGQTIAFVSGNFNVVHPGHLRLLKFAAEQADVLIVGVNP CCCEEECCHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHHHHHHCCCCEEEEECCC DSTPGVTLAQDMRLENVRSISFVHHAVRLEASASDFISHLKPTVVVKGKEFEDRANAEQD CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCHHCCCCHH AVDAYGGRLIFSSGELRFASLSLLERDANIDISTVRKPLEFPKRHGFEISNLKDLLGKLS HHHHCCCEEEEECCCEEEHHHHHHHHCCCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHC GMRVAVIGDLIVDEYVTCDAVGMSQEDPTIVVTPLMTRTFVGGAGAVAAHAHGLGADVKF CCEEEEHHHHHHHHHHEECCCCCCCCCCEEEEECHHHHHHCCCCCHHHHHHCCCCCCEEE FTLVGDDEAARFARSTLEQHGVNFNAFTDQSRPTTRKQRFRALNKTLLRVNHLRQHASDA EEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH DLQRQMLTSVERALKTCDLLLFSCFNYGCLPQDLVDAIADRARAQGVMMAADSQVSSQTG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCHHCCCCC DVSRFKGMTLLTPTEREARVALNDFISGLAVISERLVERARTKNLVITLGAEGALINTMA CHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH EGIFTSDRLPAFNPSPKDVSGAGDSFFMACSMGLRAGADIWQASYLGSLAAALQVSRVGN HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC LPLTTAELVREIDETGFSQE CCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MDHIIAVPVDAVCEKIRASCESGQTIAFVSGNFNVVHPGHLRLLKFAAEQADVLIVGVNP CCCEEECCHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHHHHHHCCCCEEEEECCC DSTPGVTLAQDMRLENVRSISFVHHAVRLEASASDFISHLKPTVVVKGKEFEDRANAEQD CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCHHCCCCHH AVDAYGGRLIFSSGELRFASLSLLERDANIDISTVRKPLEFPKRHGFEISNLKDLLGKLS HHHHCCCEEEEECCCEEEHHHHHHHHCCCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHC GMRVAVIGDLIVDEYVTCDAVGMSQEDPTIVVTPLMTRTFVGGAGAVAAHAHGLGADVKF CCEEEEHHHHHHHHHHEECCCCCCCCCCEEEEECHHHHHHCCCCCHHHHHHCCCCCCEEE FTLVGDDEAARFARSTLEQHGVNFNAFTDQSRPTTRKQRFRALNKTLLRVNHLRQHASDA EEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH DLQRQMLTSVERALKTCDLLLFSCFNYGCLPQDLVDAIADRARAQGVMMAADSQVSSQTG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCHHCCCCC DVSRFKGMTLLTPTEREARVALNDFISGLAVISERLVERARTKNLVITLGAEGALINTMA CHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH EGIFTSDRLPAFNPSPKDVSGAGDSFFMACSMGLRAGADIWQASYLGSLAAALQVSRVGN HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC LPLTTAELVREIDETGFSQE CCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA