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The map label for this gene is virS [H]

Identifier: 146341995

GI number: 146341995

Start: 5329823

End: 5330872

Strand: Direct

Name: virS [H]

Synonym: BRADO5131

Alternate gene names: 146341995

Gene position: 5329823-5330872 (Clockwise)

Preceding gene: 146341982

Following gene: 146341998

Centisome position: 71.48

GC content: 66.76

Gene sequence:

>1050_bases
ATGGCGCAGCCGCTTCGAACGACCTCATCAGCCTGGATGCGTGGCGTCGCGACCATGCTCACTGGTCAGGGACTCGATGC
GGCCGCGCTGTTTGCGGAGGTCGACCTGTCGATCGCCGATCTCGACGATTGCGATCATCGCTGGCCGACCGAGGCGCTGA
GCCGATTGTGGGTGCTGGCGGCGGAGCGGTCGGGCAATCCGGACATCGGACTGGCCAAGCGCGACGCGCCGCGGCCCGAT
CACTACGGCGTCGCCGGCTATGCGATGATGTCGAGCCCCGATCTGAAGACCGGGCTGGCCCGCCTGATCCGCTACATGTG
TCTCGTCAGCGACGCGGTGACCATCACGCTCGAACCCGGCCAGGGGGGCCACTGGGTGCGCACCGACGTGTTCGGCGGTG
AATGTCCCATTCCACGGCAGCGCTACGACTATGGCGTCGTCAACCTGCTCAATCTGTGCCGCTGGATGCTCGACCGGCGG
CTGACGCCGCTCGCCACCCGCTTCACGCATCCGGTGCCGCTGTCGATCGCGGCGTACAACGAAGCCTTCCAGTCACCGCT
CGAATTCGACGCGCCATTCAACGGCTTCCTGGTGTCGGACCAGGATCTCGCCTGCAAGCTGACGACCTCCGCGCCCGAGC
TCATCGCCATTCACGATCGCATCGCCGACGAGGCGCTGGAGCGGCTGGTCAGGAACGATACGACGCATCGCGCGCGGTCG
GCGATCGCCAAGCTGCTGCCCGACGGCAGCCCGCTGCGATCGGCGATCGCAGCCGAGCTCGGCTTGAGCGACCGCACCTT
CCAGCGCCGGCTGGCCGACGAGGGCATCTCCTTCAGCGATCTCGTCGATGATGTCAGGCGCGAGCTGGCGCAACGCTACC
TCGCCGATTCCCGCATGACGATCACCGACATCGGCTATCTGCTCGGCTATGCCGACCAGAGCACGTTCTTCCGCGCCTCC
AACCGCTGGTTCGGCGAGTCGCCGGGCGAATATCGCAGCCGCGTGCTGAATGGATATCAGCGGGAGACCGTGCTCGCGCG
CGGCAGCTGA

Upstream 100 bases:

>100_bases
GATCGCCGATGTCAGGTGCTATGCAGCCTCATGTGCACCTGCACAATGATCCGAGGATGCCAAAGCACTGGCTCCAGAAG
CCATGGAGTAGGCCAAGGGA

Downstream 100 bases:

>100_bases
GCCGGCGCCGCGCGTCGTTGCAGACGGCTTAGAACATGCCGTTCGAATTGGCCGACTGTTCGGGGATCGGCTGCACCGAA
TCCCAATGCTCCTCGATCTT

Product: AraC/XylS family transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAQPLRTTSSAWMRGVATMLTGQGLDAAALFAEVDLSIADLDDCDHRWPTEALSRLWVLAAERSGNPDIGLAKRDAPRPD
HYGVAGYAMMSSPDLKTGLARLIRYMCLVSDAVTITLEPGQGGHWVRTDVFGGECPIPRQRYDYGVVNLLNLCRWMLDRR
LTPLATRFTHPVPLSIAAYNEAFQSPLEFDAPFNGFLVSDQDLACKLTTSAPELIAIHDRIADEALERLVRNDTTHRARS
AIAKLLPDGSPLRSAIAAELGLSDRTFQRRLADEGISFSDLVDDVRRELAQRYLADSRMTITDIGYLLGYADQSTFFRAS
NRWFGESPGEYRSRVLNGYQRETVLARGS

Sequences:

>Translated_349_residues
MAQPLRTTSSAWMRGVATMLTGQGLDAAALFAEVDLSIADLDDCDHRWPTEALSRLWVLAAERSGNPDIGLAKRDAPRPD
HYGVAGYAMMSSPDLKTGLARLIRYMCLVSDAVTITLEPGQGGHWVRTDVFGGECPIPRQRYDYGVVNLLNLCRWMLDRR
LTPLATRFTHPVPLSIAAYNEAFQSPLEFDAPFNGFLVSDQDLACKLTTSAPELIAIHDRIADEALERLVRNDTTHRARS
AIAKLLPDGSPLRSAIAAELGLSDRTFQRRLADEGISFSDLVDDVRRELAQRYLADSRMTITDIGYLLGYADQSTFFRAS
NRWFGESPGEYRSRVLNGYQRETVLARGS
>Mature_348_residues
AQPLRTTSSAWMRGVATMLTGQGLDAAALFAEVDLSIADLDDCDHRWPTEALSRLWVLAAERSGNPDIGLAKRDAPRPDH
YGVAGYAMMSSPDLKTGLARLIRYMCLVSDAVTITLEPGQGGHWVRTDVFGGECPIPRQRYDYGVVNLLNLCRWMLDRRL
TPLATRFTHPVPLSIAAYNEAFQSPLEFDAPFNGFLVSDQDLACKLTTSAPELIAIHDRIADEALERLVRNDTTHRARSA
IAKLLPDGSPLRSAIAAELGLSDRTFQRRLADEGISFSDLVDDVRRELAQRYLADSRMTITDIGYLLGYADQSTFFRASN
RWFGESPGEYRSRVLNGYQRETVLARGS

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38786; Mature: 38655

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPLRTTSSAWMRGVATMLTGQGLDAAALFAEVDLSIADLDDCDHRWPTEALSRLWVLA
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHE
AERSGNPDIGLAKRDAPRPDHYGVAGYAMMSSPDLKTGLARLIRYMCLVSDAVTITLEPG
ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
QGGHWVRTDVFGGECPIPRQRYDYGVVNLLNLCRWMLDRRLTPLATRFTHPVPLSIAAYN
CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHH
EAFQSPLEFDAPFNGFLVSDQDLACKLTTSAPELIAIHDRIADEALERLVRNDTTHRARS
HHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHH
AIAKLLPDGSPLRSAIAAELGLSDRTFQRRLADEGISFSDLVDDVRRELAQRYLADSRMT
HHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCH
ITDIGYLLGYADQSTFFRASNRWFGESPGEYRSRVLNGYQRETVLARGS
HHHHHHHHHCCCCHHHEECCCCCCCCCCHHHHHHHHCCHHHHEEEECCC
>Mature Secondary Structure 
AQPLRTTSSAWMRGVATMLTGQGLDAAALFAEVDLSIADLDDCDHRWPTEALSRLWVLA
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHE
AERSGNPDIGLAKRDAPRPDHYGVAGYAMMSSPDLKTGLARLIRYMCLVSDAVTITLEPG
ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
QGGHWVRTDVFGGECPIPRQRYDYGVVNLLNLCRWMLDRRLTPLATRFTHPVPLSIAAYN
CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEHHHHH
EAFQSPLEFDAPFNGFLVSDQDLACKLTTSAPELIAIHDRIADEALERLVRNDTTHRARS
HHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHH
AIAKLLPDGSPLRSAIAAELGLSDRTFQRRLADEGISFSDLVDDVRRELAQRYLADSRMT
HHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCH
ITDIGYLLGYADQSTFFRASNRWFGESPGEYRSRVLNGYQRETVLARGS
HHHHHHHHHCCCCHHHEECCCCCCCCCCHHHHHHHHCCHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]