Click here to switch to the map view.

The map label for this gene is ydeM [H]

Identifier: 146341882

GI number: 146341882

Start: 5204778

End: 5205221

Strand: Reverse

Name: ydeM [H]

Synonym: BRADO5015

Alternate gene names: 146341882

Gene position: 5205221-5204778 (Counterclockwise)

Preceding gene: 146341883

Following gene: 146341881

Centisome position: 69.81

GC content: 65.54

Gene sequence:

>444_bases
ATGATTGAGTGGTTCGACGACCTCAAGATCGGGATGACGTTCAAGAGCGGCGAGACGACAGTGTCGCGCGAGGACATCAA
GCGCTTCGCCGCCGAATTCGATCCGCAGCCGTTTCACCTCGACGAGGCAGCCGCGGAGCAGACGATCTTCAAGGGGCTCG
CCGCCTCCGGATGGCACACCGCCGCGATCGCGATGCGGCTCGCGGCGGAGACGCGTCCCTTCGGCCCGCATCCGCTGTTG
GGCGCAGGCGTCGACGAACTGCGCTGGCTCAAGCCGGTGCGGCCGGGCGACGCGCTTCGTCTCGAGGGCGAAGTCGTCGA
TCTCATTCCTTCGCAGAGCAAGCCGCAAGGCGTGGTGCGGATCAAATGGACGGCCTTCAACCAGCACAATGAGGCCGTCT
ACACCTTCAATCCGATCGCCATCGTGCCGCGGCGCCCGGCCTGA

Upstream 100 bases:

>100_bases
GGCCTTCATCATCATCGACGACAAGGGCAACGACTTCTTCAAGGAGCTGAACCTCGGCTGACCGCTCACCGACATAATCC
ACTATGGATGTGAGGGCGGC

Downstream 100 bases:

>100_bases
GTCAGCAAGTTTGTAGCGTCGTGACGGATGTTTCTCGGACTTGATGGCTTCCGCAATGGCTGGGTCGTGGTCTCTCTTGA
CGGGGACCGCAGCGCGATCA

Product: dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MIEWFDDLKIGMTFKSGETTVSREDIKRFAAEFDPQPFHLDEAAAEQTIFKGLAASGWHTAAIAMRLAAETRPFGPHPLL
GAGVDELRWLKPVRPGDALRLEGEVVDLIPSQSKPQGVVRIKWTAFNQHNEAVYTFNPIAIVPRRPA

Sequences:

>Translated_147_residues
MIEWFDDLKIGMTFKSGETTVSREDIKRFAAEFDPQPFHLDEAAAEQTIFKGLAASGWHTAAIAMRLAAETRPFGPHPLL
GAGVDELRWLKPVRPGDALRLEGEVVDLIPSQSKPQGVVRIKWTAFNQHNEAVYTFNPIAIVPRRPA
>Mature_147_residues
MIEWFDDLKIGMTFKSGETTVSREDIKRFAAEFDPQPFHLDEAAAEQTIFKGLAASGWHTAAIAMRLAAETRPFGPHPLL
GAGVDELRWLKPVRPGDALRLEGEVVDLIPSQSKPQGVVRIKWTAFNQHNEAVYTFNPIAIVPRRPA

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16391; Mature: 16391

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEWFDDLKIGMTFKSGETTVSREDIKRFAAEFDPQPFHLDEAAAEQTIFKGLAASGWHT
CCCCCCCEEEEEEECCCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
AAIAMRLAAETRPFGPHPLLGAGVDELRWLKPVRPGDALRLEGEVVDLIPSQSKPQGVVR
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCCCEEE
IKWTAFNQHNEAVYTFNPIAIVPRRPA
EEEEEECCCCCEEEEECCEEEECCCCC
>Mature Secondary Structure
MIEWFDDLKIGMTFKSGETTVSREDIKRFAAEFDPQPFHLDEAAAEQTIFKGLAASGWHT
CCCCCCCEEEEEEECCCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
AAIAMRLAAETRPFGPHPLLGAGVDELRWLKPVRPGDALRLEGEVVDLIPSQSKPQGVVR
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCCCEEE
IKWTAFNQHNEAVYTFNPIAIVPRRPA
EEEEEECCCCCEEEEECCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]