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The map label for this gene is ydbM [H]

Identifier: 146341283

GI number: 146341283

Start: 4550800

End: 4551984

Strand: Reverse

Name: ydbM [H]

Synonym: BRADO4362

Alternate gene names: 146341283

Gene position: 4551984-4550800 (Counterclockwise)

Preceding gene: 146341284

Following gene: 146341282

Centisome position: 61.05

GC content: 67.68

Gene sequence:

>1185_bases
ATGGTAGCCGTCATCGAGAGCCTCGCGCCGCGTCAGAACGACAAGGAGAATGAGGACGAACTGATCGCACGCGCGCTGCG
GCTGGTGCCGGTTTTCGCCGAGCGCGCGCCGGCTCATGATCGCGACCGCAGTTTTCCGTTCCAAAACTTCAAGGATCTGT
TCGAGGCGGGTCTGCTGTCGCTGACCGTTCCTACTGCGCTCGGCGGGCATGGAGCGGGCGCAGGCCTCACGTCGCGCGTG
CTCGGGATCATTGCTGAGGCCGATCCGTCGACGGCGCTGGTGCTGGCGATGCATTACATCCAGCATTTTGTGATGGCGCG
GAATCAGGAATATCCGCCGCGGCTCGCCCGCAAGCTTCAGCGGGAGTCGGTCGAGCGCGGCGCGCTGATCAACACCTTCC
GCGTCGAGCCGGCGCTCGGCTCGCCGTCGCGCGGCGGCCTGCCGGAGACGATCGCGCGGCGCACCGAGACCGGCTGGCGG
CTGAGCGGCCACAAGATCTATTCGACCGGCGCGCCGATCCTGTCCTGGTACTCGGTGTGGGCCAAGACCGACGAGCCGGA
GGCGCGGCTCGGCCTGTTCCTGATACAGGCGGGATCGCCCGGCATCCGGATCGTCGAGACCTGGGATCATCTCGGCCTGC
GCGCCAGCGGCAGCCATGATGTCGTGTTCGAGGATGTCGTGATCCCGCTCGACCACGAGATCGAGCTGCACAAGCCTGCG
GACTGGCGGGTGCAGAATCCGACCCAGGCGCTGGTTCATGCCGCCTTCGTCGGCGCGATCTATGACGGCGTCGCGCGCGC
GGCGCGCAACTGGATCGTCGACTTCCTCAAGACGCGCACGCCCTCCAGCCTCGGCGCGCCGCTGTCGACTCTGCCGCGTG
CGCAGGAGGTCCTCGGTGCGATCGAGGCGCGGCTGCAGGTCAATGCAAGGCTGATCGACAGCGTCGCGCGCGACTTCGAC
GAGGGCAGGGCCGTCAGCCCGGTCGAGGGCAACATCATCAAGCTCACCGTCACCAACAATGCGGTGGCGGCGGTCGAGGA
CGCGCTGTCGCTTTCGAGCAATCACGGCCTCAGCCGCACCAATCCGCTGGAGCGGCATTATCGCGACGTGCTGTGCGGCC
GCGTTCACACCCCGCAGGACGACGCCACGCGCATCGCCGCCGGCCGTCTGGCGCTGGGACTCTAG

Upstream 100 bases:

>100_bases
CCGACATCGTCGTGGACCGGCCATATCCGCGGCATCGCGGCGATCCGCATCTCGCCGATCTGCGCCGGCAGATTCTTGGT
CTCCTCGGGTTGGAAGCGAC

Downstream 100 bases:

>100_bases
AAATACAAGGAGATAGGACCCATGTCCGAAATCGAATTCATCGGCTTCATTTCCAACAACAACTCGTCCGAGATCATCGT
CCGCCAGGGACCGGTGCTCG

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MVAVIESLAPRQNDKENEDELIARALRLVPVFAERAPAHDRDRSFPFQNFKDLFEAGLLSLTVPTALGGHGAGAGLTSRV
LGIIAEADPSTALVLAMHYIQHFVMARNQEYPPRLARKLQRESVERGALINTFRVEPALGSPSRGGLPETIARRTETGWR
LSGHKIYSTGAPILSWYSVWAKTDEPEARLGLFLIQAGSPGIRIVETWDHLGLRASGSHDVVFEDVVIPLDHEIELHKPA
DWRVQNPTQALVHAAFVGAIYDGVARAARNWIVDFLKTRTPSSLGAPLSTLPRAQEVLGAIEARLQVNARLIDSVARDFD
EGRAVSPVEGNIIKLTVTNNAVAAVEDALSLSSNHGLSRTNPLERHYRDVLCGRVHTPQDDATRIAAGRLALGL

Sequences:

>Translated_394_residues
MVAVIESLAPRQNDKENEDELIARALRLVPVFAERAPAHDRDRSFPFQNFKDLFEAGLLSLTVPTALGGHGAGAGLTSRV
LGIIAEADPSTALVLAMHYIQHFVMARNQEYPPRLARKLQRESVERGALINTFRVEPALGSPSRGGLPETIARRTETGWR
LSGHKIYSTGAPILSWYSVWAKTDEPEARLGLFLIQAGSPGIRIVETWDHLGLRASGSHDVVFEDVVIPLDHEIELHKPA
DWRVQNPTQALVHAAFVGAIYDGVARAARNWIVDFLKTRTPSSLGAPLSTLPRAQEVLGAIEARLQVNARLIDSVARDFD
EGRAVSPVEGNIIKLTVTNNAVAAVEDALSLSSNHGLSRTNPLERHYRDVLCGRVHTPQDDATRIAAGRLALGL
>Mature_394_residues
MVAVIESLAPRQNDKENEDELIARALRLVPVFAERAPAHDRDRSFPFQNFKDLFEAGLLSLTVPTALGGHGAGAGLTSRV
LGIIAEADPSTALVLAMHYIQHFVMARNQEYPPRLARKLQRESVERGALINTFRVEPALGSPSRGGLPETIARRTETGWR
LSGHKIYSTGAPILSWYSVWAKTDEPEARLGLFLIQAGSPGIRIVETWDHLGLRASGSHDVVFEDVVIPLDHEIELHKPA
DWRVQNPTQALVHAAFVGAIYDGVARAARNWIVDFLKTRTPSSLGAPLSTLPRAQEVLGAIEARLQVNARLIDSVARDFD
EGRAVSPVEGNIIKLTVTNNAVAAVEDALSLSSNHGLSRTNPLERHYRDVLCGRVHTPQDDATRIAAGRLALGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=377, Percent_Identity=25.9946949602122, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI226958412, Length=367, Percent_Identity=24.5231607629428, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI21361497, Length=374, Percent_Identity=24.5989304812834, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI226958414, Length=351, Percent_Identity=24.5014245014245, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI4557235, Length=355, Percent_Identity=21.6901408450704, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI76496475, Length=355, Percent_Identity=21.6901408450704, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17508101, Length=333, Percent_Identity=22.8228228228228, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71985184, Length=369, Percent_Identity=22.4932249322493, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17506239, Length=335, Percent_Identity=22.3880597014925, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646207, Length=363, Percent_Identity=23.6914600550964, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24666513, Length=346, Percent_Identity=22.2543352601156, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21356377, Length=362, Percent_Identity=20.9944751381215, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24660351, Length=374, Percent_Identity=21.3903743315508, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI281363737, Length=343, Percent_Identity=21.5743440233236, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43030; Mature: 43030

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAVIESLAPRQNDKENEDELIARALRLVPVFAERAPAHDRDRSFPFQNFKDLFEAGLLS
CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHE
LTVPTALGGHGAGAGLTSRVLGIIAEADPSTALVLAMHYIQHFVMARNQEYPPRLARKLQ
EECCHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RESVERGALINTFRVEPALGSPSRGGLPETIARRTETGWRLSGHKIYSTGAPILSWYSVW
HHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEECCCEEEECCCHHHHHHHHH
AKTDEPEARLGLFLIQAGSPGIRIVETWDHLGLRASGSHDVVFEDVVIPLDHEIELHKPA
HCCCCCCCEEEEEEEECCCCCEEEEEEHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCC
DWRVQNPTQALVHAAFVGAIYDGVARAARNWIVDFLKTRTPSSLGAPLSTLPRAQEVLGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHH
IEARLQVNARLIDSVARDFDEGRAVSPVEGNIIKLTVTNNAVAAVEDALSLSSNHGLSRT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCC
NPLERHYRDVLCGRVHTPQDDATRIAAGRLALGL
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MVAVIESLAPRQNDKENEDELIARALRLVPVFAERAPAHDRDRSFPFQNFKDLFEAGLLS
CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHE
LTVPTALGGHGAGAGLTSRVLGIIAEADPSTALVLAMHYIQHFVMARNQEYPPRLARKLQ
EECCHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RESVERGALINTFRVEPALGSPSRGGLPETIARRTETGWRLSGHKIYSTGAPILSWYSVW
HHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEECCCEEEECCCHHHHHHHHH
AKTDEPEARLGLFLIQAGSPGIRIVETWDHLGLRASGSHDVVFEDVVIPLDHEIELHKPA
HCCCCCCCEEEEEEEECCCCCEEEEEEHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCC
DWRVQNPTQALVHAAFVGAIYDGVARAARNWIVDFLKTRTPSSLGAPLSTLPRAQEVLGA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHH
IEARLQVNARLIDSVARDFDEGRAVSPVEGNIIKLTVTNNAVAAVEDALSLSSNHGLSRT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCC
NPLERHYRDVLCGRVHTPQDDATRIAAGRLALGL
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]