| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146341233
Identifier: 146341233
GI number: 146341233
Start: 4503830
End: 4504633
Strand: Reverse
Name: 146341233
Synonym: BRADO4309
Alternate gene names: NA
Gene position: 4504633-4503830 (Counterclockwise)
Preceding gene: 146341234
Following gene: 146341232
Centisome position: 60.41
GC content: 67.04
Gene sequence:
>804_bases ATGACTGAGGCTGCCGCCGTTCGTCCCGCCTCGACCGTGCTGCTGCTGCGCGACAGCGCGGCCACTCGCGAGATCGAGGT ATTCATGATGGTGCGTCACCATCAGATCGAGTTCAACTCGGGCGCCCTGGTGTTTCCGGGCGGCAGCGTGGACAAGGATG ATCAGGAGATCGCCGGCACTCCCGAACTCTATGCCGGTGGCCAGGGTCTCGACGCCGAGGCGCTCGGCTTCCGGATTGCC GGCGTCCGCGAGACCTTCGAGGAGAGCGGCATCCTGCTGGCGCGCCGCAAGGGCGCGGTGGCGTTGATCGAGGCCGAGGC AGCCCGTCAGATAGAGGCGGCGCATCGCCTTGCGCTGTGCGAGAGCAAGATCAGCTTCCGCGAAGTCATCGAGAGGCATG GCCTCGTGCTGGCGCTGGATGCGCTTGTGCCTTATGCGCACTGGATCACGCCCGAGGGCATGCCGAAGCGCTTCGACACC TGGTTCTTCCTGGCGGCCGCGCCGCCGGATCAGCTCGGTGCCCATGATGGCCGGGAGTCGACCGACTCGATCTGGGTGTC GCCGCGCGAGGCGCTCGCAGGCGGCGACGACGGCCGCTTCAAGCTGCCGTTCCCGACCACCCGGAACCTGATCCGGCTCG GCAAGCAGCCGGCGGTGGCCGATGCTCTTGCCGCGGCGCGTGTCATGGATATCGTGACGGTGATGCCGGTCATGACCAAG ACCGCCGACGGCGGTCGCGAACTGCGCATTCCGCGCGAAGCCGGTTATGATGGGGAAGTGTTCGCGTTCGGTGCGGCAGG TTAA
Upstream 100 bases:
>100_bases GCGCCGCGGCCAAGGCCGAGGTCGACTATCTGCTGTCGCGCGTCGCCCGCTACGACGCCCGTGCCAACCTGCAACCCCGG GCCACTGCCGCGGAGTAACC
Downstream 100 bases:
>100_bases CCGCACACGTCATTTTTCGTCTGGCCGTGATGCCCAGATGCCCATTGTTCCTGATTTGTTCTAGTTGCCGCGTGGCGGCT CGTATATACTGCGGTTCCGA
Product: putative NUDIX hydrolase
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; NUDIX Family Protein; NUDIX Family Hydrolase; Beta-Lactamase-Like; NUDIX Domain-Containing Protein; Nudix Hydrolase; Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; NUDIX Protein; Phosphohydrolase; Zinc-Dependent Hydrolase; NUDIX/MutT Family Hydrolase; Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Nudix Superfamily Hydrolase
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MTEAAAVRPASTVLLLRDSAATREIEVFMMVRHHQIEFNSGALVFPGGSVDKDDQEIAGTPELYAGGQGLDAEALGFRIA GVRETFEESGILLARRKGAVALIEAEAARQIEAAHRLALCESKISFREVIERHGLVLALDALVPYAHWITPEGMPKRFDT WFFLAAAPPDQLGAHDGRESTDSIWVSPREALAGGDDGRFKLPFPTTRNLIRLGKQPAVADALAAARVMDIVTVMPVMTK TADGGRELRIPREAGYDGEVFAFGAAG
Sequences:
>Translated_267_residues MTEAAAVRPASTVLLLRDSAATREIEVFMMVRHHQIEFNSGALVFPGGSVDKDDQEIAGTPELYAGGQGLDAEALGFRIA GVRETFEESGILLARRKGAVALIEAEAARQIEAAHRLALCESKISFREVIERHGLVLALDALVPYAHWITPEGMPKRFDT WFFLAAAPPDQLGAHDGRESTDSIWVSPREALAGGDDGRFKLPFPTTRNLIRLGKQPAVADALAAARVMDIVTVMPVMTK TADGGRELRIPREAGYDGEVFAFGAAG >Mature_266_residues TEAAAVRPASTVLLLRDSAATREIEVFMMVRHHQIEFNSGALVFPGGSVDKDDQEIAGTPELYAGGQGLDAEALGFRIAG VRETFEESGILLARRKGAVALIEAEAARQIEAAHRLALCESKISFREVIERHGLVLALDALVPYAHWITPEGMPKRFDTW FFLAAAPPDQLGAHDGRESTDSIWVSPREALAGGDDGRFKLPFPTTRNLIRLGKQPAVADALAAARVMDIVTVMPVMTKT ADGGRELRIPREAGYDGEVFAFGAAG
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI25143868, Length=212, Percent_Identity=26.4150943396226, Blast_Score=71, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28806; Mature: 28675
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEAAAVRPASTVLLLRDSAATREIEVFMMVRHHQIEFNSGALVFPGGSVDKDDQEIAGT CCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEHEEEEECCCEEEECCCCCCCCCHHHCCC PELYAGGQGLDAEALGFRIAGVRETFEESGILLARRKGAVALIEAEAARQIEAAHRLALC CCEEECCCCCCHHHHCEEEEHHHHHHHHCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHH ESKISFREVIERHGLVLALDALVPYAHWITPEGMPKRFDTWFFLAAAPPDQLGAHDGRES HHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCC TDSIWVSPREALAGGDDGRFKLPFPTTRNLIRLGKQPAVADALAAARVMDIVTVMPVMTK CCEEEECCHHHHCCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC TADGGRELRIPREAGYDGEVFAFGAAG CCCCCCEEECCHHCCCCCCEEEEECCC >Mature Secondary Structure TEAAAVRPASTVLLLRDSAATREIEVFMMVRHHQIEFNSGALVFPGGSVDKDDQEIAGT CCCCCCCCCEEEEEEECCCCCCEEEEEEEEEHEEEEECCCEEEECCCCCCCCCHHHCCC PELYAGGQGLDAEALGFRIAGVRETFEESGILLARRKGAVALIEAEAARQIEAAHRLALC CCEEECCCCCCHHHHCEEEEHHHHHHHHCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHH ESKISFREVIERHGLVLALDALVPYAHWITPEGMPKRFDTWFFLAAAPPDQLGAHDGRES HHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCC TDSIWVSPREALAGGDDGRFKLPFPTTRNLIRLGKQPAVADALAAARVMDIVTVMPVMTK CCEEEECCHHHHCCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC TADGGRELRIPREAGYDGEVFAFGAAG CCCCCCEEECCHHCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA