Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is yufQ [H]
Identifier: 146341173
GI number: 146341173
Start: 4448598
End: 4449524
Strand: Direct
Name: yufQ [H]
Synonym: BRADO4246
Alternate gene names: 146341173
Gene position: 4448598-4449524 (Clockwise)
Preceding gene: 146341172
Following gene: 146341174
Centisome position: 59.66
GC content: 68.5
Gene sequence:
>927_bases ATGGCTGACGGCAACATCGGACTCTGGACCGTGCCGCTCGCGGTGCTCGGCGGCGCCATCCGCGTCTCCACGCCGTTCCT GTTTGTGAGCCTCGGCGAATGCATCACCGAGCGCTCCGGCCGCATCAATCTCGGCCTCGAGGGCACGCTGGTGATGGGCG CGATGAGCGCCTACGGCATCTCCTATCTCTCGGGCTCGCCATGGTTAGGGGTGCTCGCCGCCGGCCTGACCGGCGCGCTG CTGGGGGCGCTGCATGCCGGCATCTGCTCGCTGCCGCGGGTCAACGACGTCGCGGTCGGAATCTCTCTCATGCTGTTCGG CACCGGGCTGGCGTTCTTCCTCGGCAAGCCGCTGATCGAGCCGACCGCGGCGCGGCTGCCGGCGATCGATTTCGGCTGGT GGAGTGACGTGCCGCAGGTCCGCGCCGCGCTGCGCATCAATGTGCTGTTCCTGTTCGGCGTGATCATGGCGCCGGTGCTG TTCTGGGCGTTCAGGACAACGCGCTGGGGCCTGTTGATCCGCACCGCCGGCGAGAGCGCCGACGCGGCGCGCGCGATGGG CCATTCGGTGCTGATGATCCGCCTGCGCGCGACCATGGCCGGCGGCTTCCTCGCCGGCATCGGCGGCTCGTTCCTGTCGC TGTTCTATCCCGGCAGCTGGAACGAGGGCCTGTCATCAGGACAAGGCATCACCGCCGTCGCGCTGGTCATCTTCGCGCGC TGGGACCCGATGCTCTGCCTGTGGGCTTCGCTCGCCTTCGGCGGCGCCGCCGCGCTCGGACCCGCACTGCAATCGGTCGG CGTCACCTCGGGCTATCATCTGTTCAACGCCGCGCCCTACATCCTGACGCTTCTCATCATGATCATCACCTGCTCGCCGA AACGCACTCTCAGCGGCGCGCCGGCCGAGCTGTCGATCACGCGGTGA
Upstream 100 bases:
>100_bases TGCCTCGGTGCTGGTGCTGCAGGGTATCATCTTCATCTCGGTGCTGGCGAGCGACGCGCTCTACGGGCGCATCGGCTTCC TCAAGGGAAAGTCGTAGGAC
Downstream 100 bases:
>100_bases TGTGAGTGCGCACGCTGAAGATGTTGGAGCAGGCGATCTTGCTGCGGCCATCCTTCGAGACGGCCGCCTGCGGCGGCCTC CTCAGGACGAGGACTGTTTC
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MADGNIGLWTVPLAVLGGAIRVSTPFLFVSLGECITERSGRINLGLEGTLVMGAMSAYGISYLSGSPWLGVLAAGLTGAL LGALHAGICSLPRVNDVAVGISLMLFGTGLAFFLGKPLIEPTAARLPAIDFGWWSDVPQVRAALRINVLFLFGVIMAPVL FWAFRTTRWGLLIRTAGESADAARAMGHSVLMIRLRATMAGGFLAGIGGSFLSLFYPGSWNEGLSSGQGITAVALVIFAR WDPMLCLWASLAFGGAAALGPALQSVGVTSGYHLFNAAPYILTLLIMIITCSPKRTLSGAPAELSITR
Sequences:
>Translated_308_residues MADGNIGLWTVPLAVLGGAIRVSTPFLFVSLGECITERSGRINLGLEGTLVMGAMSAYGISYLSGSPWLGVLAAGLTGAL LGALHAGICSLPRVNDVAVGISLMLFGTGLAFFLGKPLIEPTAARLPAIDFGWWSDVPQVRAALRINVLFLFGVIMAPVL FWAFRTTRWGLLIRTAGESADAARAMGHSVLMIRLRATMAGGFLAGIGGSFLSLFYPGSWNEGLSSGQGITAVALVIFAR WDPMLCLWASLAFGGAAALGPALQSVGVTSGYHLFNAAPYILTLLIMIITCSPKRTLSGAPAELSITR >Mature_307_residues ADGNIGLWTVPLAVLGGAIRVSTPFLFVSLGECITERSGRINLGLEGTLVMGAMSAYGISYLSGSPWLGVLAAGLTGALL GALHAGICSLPRVNDVAVGISLMLFGTGLAFFLGKPLIEPTAARLPAIDFGWWSDVPQVRAALRINVLFLFGVIMAPVLF WAFRTTRWGLLIRTAGESADAARAMGHSVLMIRLRATMAGGFLAGIGGSFLSLFYPGSWNEGLSSGQGITAVALVIFARW DPMLCLWASLAFGGAAALGPALQSVGVTSGYHLFNAAPYILTLLIMIITCSPKRTLSGAPAELSITR
Specific function: Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG1079
COG function: function code R; Uncharacterized ABC-type transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 32188; Mature: 32057
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGNIGLWTVPLAVLGGAIRVSTPFLFVSLGECITERSGRINLGLEGTLVMGAMSAYGI CCCCCCCHHHHHHHHHCCCCEECCCCCEEEHHHHHHCCCCEEEECCCCHHHHHHHHHHHH SYLSGSPWLGVLAAGLTGALLGALHAGICSLPRVNDVAVGISLMLFGTGLAFFLGKPLIE HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTAARLPAIDFGWWSDVPQVRAALRINVLFLFGVIMAPVLFWAFRTTRWGLLIRTAGESA CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH DAARAMGHSVLMIRLRATMAGGFLAGIGGSFLSLFYPGSWNEGLSSGQGITAVALVIFAR HHHHHHCCCEEEEEEHHHHCCCHHHHCCHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHC WDPMLCLWASLAFGGAAALGPALQSVGVTSGYHLFNAAPYILTLLIMIITCSPKRTLSGA CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCC PAELSITR CCEEEECC >Mature Secondary Structure ADGNIGLWTVPLAVLGGAIRVSTPFLFVSLGECITERSGRINLGLEGTLVMGAMSAYGI CCCCCCHHHHHHHHHCCCCEECCCCCEEEHHHHHHCCCCEEEECCCCHHHHHHHHHHHH SYLSGSPWLGVLAAGLTGALLGALHAGICSLPRVNDVAVGISLMLFGTGLAFFLGKPLIE HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTAARLPAIDFGWWSDVPQVRAALRINVLFLFGVIMAPVLFWAFRTTRWGLLIRTAGESA CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH DAARAMGHSVLMIRLRATMAGGFLAGIGGSFLSLFYPGSWNEGLSSGQGITAVALVIFAR HHHHHHCCCEEEEEEHHHHCCCHHHHCCHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHC WDPMLCLWASLAFGGAAALGPALQSVGVTSGYHLFNAAPYILTLLIMIITCSPKRTLSGA CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCC PAELSITR CCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]