| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is arnT [H]
Identifier: 146340856
GI number: 146340856
Start: 4097870
End: 4099612
Strand: Reverse
Name: arnT [H]
Synonym: BRADO3919
Alternate gene names: 146340856
Gene position: 4099612-4097870 (Counterclockwise)
Preceding gene: 146340857
Following gene: 146340855
Centisome position: 54.98
GC content: 67.53
Gene sequence:
>1743_bases ATGGTCGAGACCTATGCCCGCCCCCGTTTTGGAGAGCCGCGCGAGCCGAAGAACCTGGTGAATCCGGGCAATCGGCTGGT GCGGATGATCGATGCCGTCACCGTGAGCCATGCCAGGGCGGTCGCGTTCCTGCTCGTCTGCGGCTTGCTGCTGTTCCTGC CCGGCTTTTTCACGATTCCGCCGGTCGATCGCGACGAGGCGCGTTTCGCGCAGGCGACCAAGCAGATGGTCGAGAGCGGC GATTACGTCGACATCCGGTTCCAGGACGACGTGCGTTACAAGAAGCCGGTCGGCATCTACTGGCTGCAGTCGGCTGCCGT TGAGACCGCCTCGGCCATCGGATTGCCGCGCGCGCAATTGCGCATCTGGGTCTATCGCATTCCCTCTCTGATCGGCGCCA TCGGCGCAGTCCTGCTGACATACTGGACGGCGCTCGCCTTCGTCACGCGGCGCGGCGCGGTGTTCGCGGCGCTCCTGATG TGCTGCTCGGTGCTGCTCGGCGTCGAGGCGCGGCTCGCCAAGACCGATGCGATGCTGCTGTTCACCGTTGTCGCCGCGAT GGGCGCGCTGGCGCGTATCTATTTGTCCTGGCAGCGCGGCGAGGACCCCGAGCATCCGCCATGGGGGCCGCCCGCGATCT TCTGGACCGCGCTCGCCGCCGGCATCCTGATCAAGGGCCCGCTGATCCTGATGTTCGCCGGGCTCACGATCATCGCGCTC GCGATCATGGATCGCGGCGCCGGCTGGTTGTGGCGCCTGCGGCCCGTCTGGGGCCTGATGTGGATGCTGGTGCTGGTGCT GCCCTGGTTCGTGCTGATCTTCCTGCGCGCCGGCGATACCTTCTTCACCGACTCGGTCGGCGGCGACATGCTGAGCAAAA TCAGCGCCCAGGAATCCCATGGGGCGCCGCCGGGTCTCTATTTGCTGCTGCTCTTCATCACGTTCTGGCCCGGTGCCCCG CTCGCTGCGATGGCCGCGCCGGCCGTGTGGCGTGCGCGGCGCGAGCCGGGAGCGCAATTCCTGCTGGCGTGGCTGCTGCC GTCCTGGATCGTGTTCGAGGCGGTGCTGACCAAGCTGCCACATTACGTGCTGCCGCTGTATCCGGCGATTGCGATCCTCA CGGTGGGCGCGCTCGAGCGACGCGTGCTGTCGCGCTCCTGGCTGCGGAGGGGGGCAGCCTGGTGGTTCGCCATTCCGGCC ATCACCTCGGTGGTCGCGGTAATCGGCGCCATCATCGTGACGCACCAGCCGGTGTTCCTGGCCTGGCCGTTCGTCGCTGT ATCGCTCATCTTCGGCCTGTTCGCCTGGTGGCTTTATGACGATGGCCGCGCCGAGCGCTCGCTGCTGAATGCCGCCGTCG CTGCGATGTTTCTCGCGTTCGTCGTTTATGGCGCGGTCCTGCCGGCGCTGACGCCGCTGTTCCCCAGCGCCGAGATTGCC CGCGCGCTGCGCAATGTCGTCTGCGTCGGGCCGAAGGCGGCAGCCGCCGGCTTCCACGAGCCCAGCCTGGTGTTCATGAC GGGCACGTCGACGCAACTGACGGACGGCTCGGGAGCCGCCGACTTCCTCAGCCAGGGCACCTGCCGCTTCGCGCTGGTCG AGCAGCGTACCGAGCGCGCCTTCGTGCAGCGCGCCGAGGCGATCGGGCTGCGCTACAACGTCGCCCGCCGCATCGACGGC TACAATATCTCCCAGGGCCGCCCGGTCTCGATTGCGATCTATCGCTCGGAAGGGACCGAGTAG
Upstream 100 bases:
>100_bases GATCGACGCCACGGGCGCTGCGGACACAGTTGTGGTCAGAATCCAGTGACCGTTCGCTAAGCGGTTGTCGGCATGGTGGT TTCAGCGTATTCGGAACCCC
Downstream 100 bases:
>100_bases ATGTCTGCGCCCGACAGTTCTTCGCGGTCGTCAGGCTATTTCGCGCAGCTCGCGCTGGTCGGAAAATTCTCCCTGGGCCG TCTTGTGCGCCGTCCGCAGG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MVETYARPRFGEPREPKNLVNPGNRLVRMIDAVTVSHARAVAFLLVCGLLLFLPGFFTIPPVDRDEARFAQATKQMVESG DYVDIRFQDDVRYKKPVGIYWLQSAAVETASAIGLPRAQLRIWVYRIPSLIGAIGAVLLTYWTALAFVTRRGAVFAALLM CCSVLLGVEARLAKTDAMLLFTVVAAMGALARIYLSWQRGEDPEHPPWGPPAIFWTALAAGILIKGPLILMFAGLTIIAL AIMDRGAGWLWRLRPVWGLMWMLVLVLPWFVLIFLRAGDTFFTDSVGGDMLSKISAQESHGAPPGLYLLLLFITFWPGAP LAAMAAPAVWRARREPGAQFLLAWLLPSWIVFEAVLTKLPHYVLPLYPAIAILTVGALERRVLSRSWLRRGAAWWFAIPA ITSVVAVIGAIIVTHQPVFLAWPFVAVSLIFGLFAWWLYDDGRAERSLLNAAVAAMFLAFVVYGAVLPALTPLFPSAEIA RALRNVVCVGPKAAAAGFHEPSLVFMTGTSTQLTDGSGAADFLSQGTCRFALVEQRTERAFVQRAEAIGLRYNVARRIDG YNISQGRPVSIAIYRSEGTE
Sequences:
>Translated_580_residues MVETYARPRFGEPREPKNLVNPGNRLVRMIDAVTVSHARAVAFLLVCGLLLFLPGFFTIPPVDRDEARFAQATKQMVESG DYVDIRFQDDVRYKKPVGIYWLQSAAVETASAIGLPRAQLRIWVYRIPSLIGAIGAVLLTYWTALAFVTRRGAVFAALLM CCSVLLGVEARLAKTDAMLLFTVVAAMGALARIYLSWQRGEDPEHPPWGPPAIFWTALAAGILIKGPLILMFAGLTIIAL AIMDRGAGWLWRLRPVWGLMWMLVLVLPWFVLIFLRAGDTFFTDSVGGDMLSKISAQESHGAPPGLYLLLLFITFWPGAP LAAMAAPAVWRARREPGAQFLLAWLLPSWIVFEAVLTKLPHYVLPLYPAIAILTVGALERRVLSRSWLRRGAAWWFAIPA ITSVVAVIGAIIVTHQPVFLAWPFVAVSLIFGLFAWWLYDDGRAERSLLNAAVAAMFLAFVVYGAVLPALTPLFPSAEIA RALRNVVCVGPKAAAAGFHEPSLVFMTGTSTQLTDGSGAADFLSQGTCRFALVEQRTERAFVQRAEAIGLRYNVARRIDG YNISQGRPVSIAIYRSEGTE >Mature_580_residues MVETYARPRFGEPREPKNLVNPGNRLVRMIDAVTVSHARAVAFLLVCGLLLFLPGFFTIPPVDRDEARFAQATKQMVESG DYVDIRFQDDVRYKKPVGIYWLQSAAVETASAIGLPRAQLRIWVYRIPSLIGAIGAVLLTYWTALAFVTRRGAVFAALLM CCSVLLGVEARLAKTDAMLLFTVVAAMGALARIYLSWQRGEDPEHPPWGPPAIFWTALAAGILIKGPLILMFAGLTIIAL AIMDRGAGWLWRLRPVWGLMWMLVLVLPWFVLIFLRAGDTFFTDSVGGDMLSKISAQESHGAPPGLYLLLLFITFWPGAP LAAMAAPAVWRARREPGAQFLLAWLLPSWIVFEAVLTKLPHYVLPLYPAIAILTVGALERRVLSRSWLRRGAAWWFAIPA ITSVVAVIGAIIVTHQPVFLAWPFVAVSLIFGLFAWWLYDDGRAERSLLNAAVAAMFLAFVVYGAVLPALTPLFPSAEIA RALRNVVCVGPKAAAAGFHEPSLVFMTGTSTQLTDGSGAADFLSQGTCRFALVEQRTERAFVQRAEAIGLRYNVARRIDG YNISQGRPVSIAIYRSEGTE
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 63784; Mature: 63784
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVETYARPRFGEPREPKNLVNPGNRLVRMIDAVTVSHARAVAFLLVCGLLLFLPGFFTIP CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PVDRDEARFAQATKQMVESGDYVDIRFQDDVRYKKPVGIYWLQSAAVETASAIGLPRAQL CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHH RIWVYRIPSLIGAIGAVLLTYWTALAFVTRRGAVFAALLMCCSVLLGVEARLAKTDAMLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FTVVAAMGALARIYLSWQRGEDPEHPPWGPPAIFWTALAAGILIKGPLILMFAGLTIIAL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AIMDRGAGWLWRLRPVWGLMWMLVLVLPWFVLIFLRAGDTFFTDSVGGDMLSKISAQESH HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCC GAPPGLYLLLLFITFWPGAPLAAMAAPAVWRARREPGAQFLLAWLLPSWIVFEAVLTKLP CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC HYVLPLYPAIAILTVGALERRVLSRSWLRRGAAWWFAIPAITSVVAVIGAIIVTHQPVFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH AWPFVAVSLIFGLFAWWLYDDGRAERSLLNAAVAAMFLAFVVYGAVLPALTPLFPSAEIA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH RALRNVVCVGPKAAAAGFHEPSLVFMTGTSTQLTDGSGAADFLSQGTCRFALVEQRTERA HHHHHHEECCCCHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH FVQRAEAIGLRYNVARRIDGYNISQGRPVSIAIYRSEGTE HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC >Mature Secondary Structure MVETYARPRFGEPREPKNLVNPGNRLVRMIDAVTVSHARAVAFLLVCGLLLFLPGFFTIP CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PVDRDEARFAQATKQMVESGDYVDIRFQDDVRYKKPVGIYWLQSAAVETASAIGLPRAQL CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHH RIWVYRIPSLIGAIGAVLLTYWTALAFVTRRGAVFAALLMCCSVLLGVEARLAKTDAMLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FTVVAAMGALARIYLSWQRGEDPEHPPWGPPAIFWTALAAGILIKGPLILMFAGLTIIAL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AIMDRGAGWLWRLRPVWGLMWMLVLVLPWFVLIFLRAGDTFFTDSVGGDMLSKISAQESH HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCC GAPPGLYLLLLFITFWPGAPLAAMAAPAVWRARREPGAQFLLAWLLPSWIVFEAVLTKLP CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC HYVLPLYPAIAILTVGALERRVLSRSWLRRGAAWWFAIPAITSVVAVIGAIIVTHQPVFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH AWPFVAVSLIFGLFAWWLYDDGRAERSLLNAAVAAMFLAFVVYGAVLPALTPLFPSAEIA HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH RALRNVVCVGPKAAAAGFHEPSLVFMTGTSTQLTDGSGAADFLSQGTCRFALVEQRTERA HHHHHHEECCCCHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHH FVQRAEAIGLRYNVARRIDGYNISQGRPVSIAIYRSEGTE HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA