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The map label for this gene is yhdX [H]

Identifier: 146340849

GI number: 146340849

Start: 4090108

End: 4091313

Strand: Reverse

Name: yhdX [H]

Synonym: BRADO3912

Alternate gene names: 146340849

Gene position: 4091313-4090108 (Counterclockwise)

Preceding gene: 146340850

Following gene: 146340848

Centisome position: 54.87

GC content: 63.43

Gene sequence:

>1206_bases
ATGAGTATCGAAGCGAGGCTACCGCCTCCGCAATATGGGCTTCGTTTGAAGCGCATGCTGGGGGGCAAGGCAGGATGGAA
CGGCATCATCCTGCAGATCCTGTTCGTCGCAGTCCTGGTGTGGGTTGGCTACGAGATCGTCGCCAACGCCCGCAGCAACC
TGGCCGCCCAGCGCATCACGTCGGGCTTCGGGTTCCTCAACAACACGGCCGGGTTCGACGTGAACCAGGCCCTGATCAGC
TACTCCGGCTCGGACAGCTACAGCCGCGTGCTGATGGTCGGCATTCTCAACACGCTGCTGGTCTCGGTGATCGGCATCGT
GCTGGCGACCATCCTCGGCCTGATCGTGGCGCTCGGCCGTCTGTCTCCGAACGGCCTGCTGTCGCGGGTTGCCGGCGCCT
ATGTCGAGCTGATCCGTAATCTGCCGCTGCTGTTTCAGATCACGTTCTGGTATCTCGCCGTGCTCGCCGCCTTGCCCGGA
CCGCGCCAGAGCATCTCGGTGTTTTCGACCTTCTTCCTCAATAACCGCGGCTTCATCGTTCCGCGCCCGATCGAGGAGCC
GGGCCTGATGCCGTTCCTGATCGCGCTCGGCGTCGCGATCGCAGGCTCGATCGGCCTGCGGTTCTATGCGCGACGCGAAT
TGTTCGTCCGCGGACATGCGATGCGGATCTGGCCCTATGTGCTAGGAATGCTGATCGGCCTGCCGCTGCTGGCCTTGGTT
GTGTTCGGCGCTCCCGTGGCGTTCGAAGTGCCGGTGCTGAAGGGCTTCAACTTCGCCGGCGGCTCGCGCATCATCCCTGA
ATTCGTGGCGCTGACGCTGGCCTTGACCATGTACACAGCCTCCTTCATCGCGGAGGTGGTGCGTGGCGGCATCCTGTCGG
TCCACAAGGGACAGATGGAGGCCGGCCTGTCGCTCGGTCTCAGCCGCGGCACGGTGTTGCGCCTGATCGTCGTGCCGCAG
GCGCTCCGGGTGATCCTGCCGCCGCTGACCAACCAATATCTCAACCTGACCAAGAACTCGTCGCTCGCGGTCGCGATCGG
CTATCCCGACCTGGTCTCGGTGTTTGCCGGCACGACGATGAGCCAGACCGGACAGGCCATCGAGATCATCGGCATCACGA
TGGGCGTCTATCTCGCGATGTCGCTGATCACGAGCGCGATCATGAGCTTCTACAGCTGGCGGCTGGGCAAGAGGCTTGGA
GCATGA

Upstream 100 bases:

>100_bases
CTGCAGATCGCGCGCGGTCTGAACCAGCTCTGGAACAAGGGCGGCCTGCAGTACGCGCCGCCGATCCGCTAACAGCTGCA
CGATATCGGGGCTGCGGCGA

Downstream 100 bases:

>100_bases
CCAGGCTCGGGGACGAAGACCTCTGGCGCATGAAGAGATTTCGCGCATGACCGACATCACAGCCTCGAACTTCATCCGCC
AGGACATGGCTGGCGAGCGT

Product: putative amino acid transport protein, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSIEARLPPPQYGLRLKRMLGGKAGWNGIILQILFVAVLVWVGYEIVANARSNLAAQRITSGFGFLNNTAGFDVNQALIS
YSGSDSYSRVLMVGILNTLLVSVIGIVLATILGLIVALGRLSPNGLLSRVAGAYVELIRNLPLLFQITFWYLAVLAALPG
PRQSISVFSTFFLNNRGFIVPRPIEEPGLMPFLIALGVAIAGSIGLRFYARRELFVRGHAMRIWPYVLGMLIGLPLLALV
VFGAPVAFEVPVLKGFNFAGGSRIIPEFVALTLALTMYTASFIAEVVRGGILSVHKGQMEAGLSLGLSRGTVLRLIVVPQ
ALRVILPPLTNQYLNLTKNSSLAVAIGYPDLVSVFAGTTMSQTGQAIEIIGITMGVYLAMSLITSAIMSFYSWRLGKRLG
A

Sequences:

>Translated_401_residues
MSIEARLPPPQYGLRLKRMLGGKAGWNGIILQILFVAVLVWVGYEIVANARSNLAAQRITSGFGFLNNTAGFDVNQALIS
YSGSDSYSRVLMVGILNTLLVSVIGIVLATILGLIVALGRLSPNGLLSRVAGAYVELIRNLPLLFQITFWYLAVLAALPG
PRQSISVFSTFFLNNRGFIVPRPIEEPGLMPFLIALGVAIAGSIGLRFYARRELFVRGHAMRIWPYVLGMLIGLPLLALV
VFGAPVAFEVPVLKGFNFAGGSRIIPEFVALTLALTMYTASFIAEVVRGGILSVHKGQMEAGLSLGLSRGTVLRLIVVPQ
ALRVILPPLTNQYLNLTKNSSLAVAIGYPDLVSVFAGTTMSQTGQAIEIIGITMGVYLAMSLITSAIMSFYSWRLGKRLG
A
>Mature_400_residues
SIEARLPPPQYGLRLKRMLGGKAGWNGIILQILFVAVLVWVGYEIVANARSNLAAQRITSGFGFLNNTAGFDVNQALISY
SGSDSYSRVLMVGILNTLLVSVIGIVLATILGLIVALGRLSPNGLLSRVAGAYVELIRNLPLLFQITFWYLAVLAALPGP
RQSISVFSTFFLNNRGFIVPRPIEEPGLMPFLIALGVAIAGSIGLRFYARRELFVRGHAMRIWPYVLGMLIGLPLLALVV
FGAPVAFEVPVLKGFNFAGGSRIIPEFVALTLALTMYTASFIAEVVRGGILSVHKGQMEAGLSLGLSRGTVLRLIVVPQA
LRVILPPLTNQYLNLTKNSSLAVAIGYPDLVSVFAGTTMSQTGQAIEIIGITMGVYLAMSLITSAIMSFYSWRLGKRLGA

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=348, Percent_Identity=52.5862068965517, Blast_Score=353, Evalue=8e-99,
Organism=Escherichia coli, GI1787030, Length=167, Percent_Identity=35.9281437125749, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788226, Length=124, Percent_Identity=33.0645161290323, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786874, Length=121, Percent_Identity=36.3636363636364, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786873, Length=118, Percent_Identity=32.2033898305085, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082239, Length=136, Percent_Identity=31.6176470588235, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788645, Length=111, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43142; Mature: 43011

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIEARLPPPQYGLRLKRMLGGKAGWNGIILQILFVAVLVWVGYEIVANARSNLAAQRIT
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGFGFLNNTAGFDVNQALISYSGSDSYSRVLMVGILNTLLVSVIGIVLATILGLIVALGR
HHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSPNGLLSRVAGAYVELIRNLPLLFQITFWYLAVLAALPGPRQSISVFSTFFLNNRGFIV
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEE
PRPIEEPGLMPFLIALGVAIAGSIGLRFYARRELFVRGHAMRIWPYVLGMLIGLPLLALV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VFGAPVAFEVPVLKGFNFAGGSRIIPEFVALTLALTMYTASFIAEVVRGGILSVHKGQME
HHCCCCEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHH
AGLSLGLSRGTVLRLIVVPQALRVILPPLTNQYLNLTKNSSLAVAIGYPDLVSVFAGTTM
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHCCCH
SQTGQAIEIIGITMGVYLAMSLITSAIMSFYSWRLGKRLGA
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]