| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is pgaC [H]
Identifier: 146340703
GI number: 146340703
Start: 3918891
End: 3921593
Strand: Reverse
Name: pgaC [H]
Synonym: BRADO3754
Alternate gene names: 146340703
Gene position: 3921593-3918891 (Counterclockwise)
Preceding gene: 146340704
Following gene: 146340701
Centisome position: 52.59
GC content: 66.22
Gene sequence:
>2703_bases ATGCGCTTGATCGCAGCCGTCATCCTGTTCGTCACAGCAGCCCATGCCGCGCTGTGGGGCGTCCTGCAGACCAAGCAGAG CGCGCCCGATTTCACCGGCATGCTGCCGAGCGTGTCCTACGCGCCGTTCGAAGGCACCGAGCATCCCGACGTCGACAACA TCCCCAACGCCGAGCGCATCCGTTCCGACCTGAAGAAGCTCGCCACCATCACCCGCGCCATCCGCCTGTACTCGTCGACC GGCGGCGTCGAGCTGGTGCCGCCGATCGCGGCCGAGGTCGGGCTGAAGGTCATGCTCGGCGTCTGGATCGACAAGAACGA AGACCGCAACGAGCGCGAGATCGCCGCCGCCGTGCAGCTCGCCCGCCGCAACAGCAACGTCATCGGCGTCGTCGTCGGCA ACGAGACGCTGTACCGTGGCGAGCTCAAGCCGGACGAGCTGATCGGCTACATCAAGAAGGTCAAGAAGTCGGTCAGCGTG CCCGTCACGACCGGCGAGATCTGGAACCTGTGGCGCGACTATCCGCAACTCGCCTCCAGCGTCGATTTCATTGCCGCTCA CGTGTTGCCCTACTGGGAGTTCTTCAACCATACCCAGGCCGTCGACCAGGCGGTCGAGCGCTACCAGCTCTTGCGCGAAA AGTTTCCCGGCAAGCGCATCGTCATCGCCGAGTTCGGCTGGCCGAGCGAGGGCTACAACCGCGGCATCGCCGATCCCGGG CCGTTCCAGCAGGCCTGGGTGCTGCGCAATTTCGTCACCCGCGCCGAAGCCATCGGCATGGAGTACAACATCGTCGAGGG CATCGATCAGCCCTGGAAGTTCTTCGAGGGCGGCGTCGGCCCGTATTGGGGCGTGCTGAACGCCTCGCGCGAGGCCAAGT TCTCCTGGACCGGCCCGATCGTGAACCCCGACTATTGGAAACTCGCGACCATCGCGCTCCTGGTCGGCGTGCTGCTGTCG CTGCCGATCGTGCGGCTGCGCCAGCCGACGGTGCTGCAGGCGATGGTGCTGGCGATCACGGCGCATGGCGTCGGCGCCTG GGTCTCCAACGTCTTCGCCTATTGGAACGTGCACTATTTCGTCTGGGGCTCGGCCTTCGCGCTCACCCTCGGCCTCACGC TCCTGGTCCCGCTGATTCTCATCGCGATGGCCCGCATCGAGGAGATCGCCGCGATCGCCTTCGGCCGCGCGCCGCGCCGG CTGCTCACCCGCGACAAGGTCGCGCGCGACCGCGCCGCGATGCCTGCGGGCTATTGCCCGAAGGTCTCGATCCACGTGCC GGCCTATTTCGAGCCGGTCGAGATGATGAAGCAGACGCTGGATGCGCTGGCCCGACTCGACTACCCGAACTACGAGGTCG TCTGCATCATCAACAACACGCCCGACCCGGCATTCTGGCAGCCGATCCAGGATCACTGCCGCATGCTCGGCGAGCGCTTC AAGTTCATCAACGCCGAGAAGGTCAAGGGCTTCAAGGCCGGCGCCCTGCGCATCGCCATGGAGCGCACCGCGGCCGATGC CGAGATCATCGGCATCATCGACGCCGACTATGTCGTGACGCCCGACTGGCTGTCCGACCTCGTGCCGGCCTTCGCCGACC CCGCCGTGGGCCTTGTGCAGGCGCCGCAGGAGCATCGCGACGAGGACTTGTCGCTGATGCACTACATCATGAACGGCGAG TATGCCGGGTTCTTCGACATCGGCATGGTCCAGCGCAACGAGGAGAACGCGATCATCGTGCACGGCACGATGTGCCTGAT CCGCCGCGCCGCGATGGACATGGCCGGCGGCTGGTCGAGCGACACGATCTGCGAGGATACCGACCTCGGCCTCGCCATCC AGGAGCTGGGCTGGCAGACCCACTACACCGCCACCCGCTACGGCTCGGGCCTGCTGCCGGACACCTACGAGGCGTTCAAG AAGCAGCGCCACCGCTGGGCCTATGGCGGCTTCCAGATCGTCAAGAAACACTGGCAGCGCTTCCTGCCCGGCCGCAGCCG CCTGACATCAGATCAGAAGCGCGAGTTCTCGCTCGGCTGGCTCAACTGGCTCGGCGCCGAGAGCCTCGGCGTGGTCGTCG CGATCCTCAACCTGATCTGGGTGCCGATCGTGGCGTTTGCCGGCATCGCAATCCCCGACAAGATCCTGACCATCCCGATC ATCGCCGCCTTCGTGGTCTCGCTGGCGCACTTCCTGATCCTCTACCGCCTTCGCGTCGCGGTGAAGCCGTGGCAGATGCT GGGTGCGATGATCGCGGCCATGAGTGTGCAATGGACGGTGAGCCGCGCCGTGGCGCAGGGCCTGATCACCGAGCATCTCG CCTTCGCCCGCACGTCCAAGGGCGGCCTGTCGCGGATGTCGATCGAGTTCCAGGCGTTCTGGGAGGCCGTCATCGGCGCC CTGCTCCTGATCGGCGCCGCCATCCTGATCACCACCAATTACCTTGGGATCACCGAGCTCTACATCTTCGCCGCCGTCCT GATCCTGGAGAGCCTGCCGTTCCTCTCGGCCGTCGCGATCGCCATCCTGGAGCTGTCCCGCATCAACTCCTTCGACTTCT GGCGCCACGCCACCATCCGAACCGCCGAGCTGATCGGCCTGCGCCCGGTCTGGGTGCCGGAGCTCGCCGGGCCAGGGATG CTGCAGCCGATGCAGCCGGCGCCGCTGAGCGCGGCGGCGACGAAGGCGGCGGAGAAGGTGTAG
Upstream 100 bases:
>100_bases CCTGGGCAGCACGTGGGCCGAGCGCGCTGCCGGCGCGGCCGCGCACTCTCGCGCTGGATCCGCCGCTCCTCCCTCTCCGC CCGCCACGGTGTCCCGCCAG
Downstream 100 bases:
>100_bases GACCCAGGGCGCAGGCCGACAGGCCGACTCCTGGGCCAGTCCCATGCCATTCCTGGGGCATCCCGCCCGCGGCCATCCTT CGAGACGCCCGCCTCCGGCG
Product: putative beta-(1-3)-glucosyl transferase, ndvB-like
Products: NA
Alternate protein names: PGA synthase; Poly-beta-1,6-GlcNAc synthase; Biofilm PGA synthesis protein PgaC; N-acetylglucosaminyltransferase PgaC [H]
Number of amino acids: Translated: 900; Mature: 900
Protein sequence:
>900_residues MRLIAAVILFVTAAHAALWGVLQTKQSAPDFTGMLPSVSYAPFEGTEHPDVDNIPNAERIRSDLKKLATITRAIRLYSST GGVELVPPIAAEVGLKVMLGVWIDKNEDRNEREIAAAVQLARRNSNVIGVVVGNETLYRGELKPDELIGYIKKVKKSVSV PVTTGEIWNLWRDYPQLASSVDFIAAHVLPYWEFFNHTQAVDQAVERYQLLREKFPGKRIVIAEFGWPSEGYNRGIADPG PFQQAWVLRNFVTRAEAIGMEYNIVEGIDQPWKFFEGGVGPYWGVLNASREAKFSWTGPIVNPDYWKLATIALLVGVLLS LPIVRLRQPTVLQAMVLAITAHGVGAWVSNVFAYWNVHYFVWGSAFALTLGLTLLVPLILIAMARIEEIAAIAFGRAPRR LLTRDKVARDRAAMPAGYCPKVSIHVPAYFEPVEMMKQTLDALARLDYPNYEVVCIINNTPDPAFWQPIQDHCRMLGERF KFINAEKVKGFKAGALRIAMERTAADAEIIGIIDADYVVTPDWLSDLVPAFADPAVGLVQAPQEHRDEDLSLMHYIMNGE YAGFFDIGMVQRNEENAIIVHGTMCLIRRAAMDMAGGWSSDTICEDTDLGLAIQELGWQTHYTATRYGSGLLPDTYEAFK KQRHRWAYGGFQIVKKHWQRFLPGRSRLTSDQKREFSLGWLNWLGAESLGVVVAILNLIWVPIVAFAGIAIPDKILTIPI IAAFVVSLAHFLILYRLRVAVKPWQMLGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLSRMSIEFQAFWEAVIGA LLLIGAAILITTNYLGITELYIFAAVLILESLPFLSAVAIAILELSRINSFDFWRHATIRTAELIGLRPVWVPELAGPGM LQPMQPAPLSAAATKAAEKV
Sequences:
>Translated_900_residues MRLIAAVILFVTAAHAALWGVLQTKQSAPDFTGMLPSVSYAPFEGTEHPDVDNIPNAERIRSDLKKLATITRAIRLYSST GGVELVPPIAAEVGLKVMLGVWIDKNEDRNEREIAAAVQLARRNSNVIGVVVGNETLYRGELKPDELIGYIKKVKKSVSV PVTTGEIWNLWRDYPQLASSVDFIAAHVLPYWEFFNHTQAVDQAVERYQLLREKFPGKRIVIAEFGWPSEGYNRGIADPG PFQQAWVLRNFVTRAEAIGMEYNIVEGIDQPWKFFEGGVGPYWGVLNASREAKFSWTGPIVNPDYWKLATIALLVGVLLS LPIVRLRQPTVLQAMVLAITAHGVGAWVSNVFAYWNVHYFVWGSAFALTLGLTLLVPLILIAMARIEEIAAIAFGRAPRR LLTRDKVARDRAAMPAGYCPKVSIHVPAYFEPVEMMKQTLDALARLDYPNYEVVCIINNTPDPAFWQPIQDHCRMLGERF KFINAEKVKGFKAGALRIAMERTAADAEIIGIIDADYVVTPDWLSDLVPAFADPAVGLVQAPQEHRDEDLSLMHYIMNGE YAGFFDIGMVQRNEENAIIVHGTMCLIRRAAMDMAGGWSSDTICEDTDLGLAIQELGWQTHYTATRYGSGLLPDTYEAFK KQRHRWAYGGFQIVKKHWQRFLPGRSRLTSDQKREFSLGWLNWLGAESLGVVVAILNLIWVPIVAFAGIAIPDKILTIPI IAAFVVSLAHFLILYRLRVAVKPWQMLGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLSRMSIEFQAFWEAVIGA LLLIGAAILITTNYLGITELYIFAAVLILESLPFLSAVAIAILELSRINSFDFWRHATIRTAELIGLRPVWVPELAGPGM LQPMQPAPLSAAATKAAEKV >Mature_900_residues MRLIAAVILFVTAAHAALWGVLQTKQSAPDFTGMLPSVSYAPFEGTEHPDVDNIPNAERIRSDLKKLATITRAIRLYSST GGVELVPPIAAEVGLKVMLGVWIDKNEDRNEREIAAAVQLARRNSNVIGVVVGNETLYRGELKPDELIGYIKKVKKSVSV PVTTGEIWNLWRDYPQLASSVDFIAAHVLPYWEFFNHTQAVDQAVERYQLLREKFPGKRIVIAEFGWPSEGYNRGIADPG PFQQAWVLRNFVTRAEAIGMEYNIVEGIDQPWKFFEGGVGPYWGVLNASREAKFSWTGPIVNPDYWKLATIALLVGVLLS LPIVRLRQPTVLQAMVLAITAHGVGAWVSNVFAYWNVHYFVWGSAFALTLGLTLLVPLILIAMARIEEIAAIAFGRAPRR LLTRDKVARDRAAMPAGYCPKVSIHVPAYFEPVEMMKQTLDALARLDYPNYEVVCIINNTPDPAFWQPIQDHCRMLGERF KFINAEKVKGFKAGALRIAMERTAADAEIIGIIDADYVVTPDWLSDLVPAFADPAVGLVQAPQEHRDEDLSLMHYIMNGE YAGFFDIGMVQRNEENAIIVHGTMCLIRRAAMDMAGGWSSDTICEDTDLGLAIQELGWQTHYTATRYGSGLLPDTYEAFK KQRHRWAYGGFQIVKKHWQRFLPGRSRLTSDQKREFSLGWLNWLGAESLGVVVAILNLIWVPIVAFAGIAIPDKILTIPI IAAFVVSLAHFLILYRLRVAVKPWQMLGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLSRMSIEFQAFWEAVIGA LLLIGAAILITTNYLGITELYIFAAVLILESLPFLSAVAIAILELSRINSFDFWRHATIRTAELIGLRPVWVPELAGPGM LQPMQPAPLSAAATKAAEKV
Specific function: Probable N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N- acetylglucosamine to produce the linear homopolymer poly-beta-1,6- N-acetyl-D-glucosamine (PGA), a biofilm adhesin polysaccharide [H]
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787259, Length=246, Percent_Identity=29.2682926829268, Blast_Score=90, Evalue=7e-19, Organism=Escherichia coli, GI87082284, Length=243, Percent_Identity=26.7489711934156, Blast_Score=74, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6321721, Length=261, Percent_Identity=24.1379310344828, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 100045; Mature: 100045
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLIAAVILFVTAAHAALWGVLQTKQSAPDFTGMLPSVSYAPFEGTEHPDVDNIPNAERI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH RSDLKKLATITRAIRLYSSTGGVELVPPIAAEVGLKVMLGVWIDKNEDRNEREIAAAVQL HHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHCHHEEEEEEECCCCCCCHHHHHHHHHH ARRNSNVIGVVVGNETLYRGELKPDELIGYIKKVKKSVSVPVTTGEIWNLWRDYPQLASS HHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH VDFIAAHVLPYWEFFNHTQAVDQAVERYQLLREKFPGKRIVIAEFGWPSEGYNRGIADPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC PFQQAWVLRNFVTRAEAIGMEYNIVEGIDQPWKFFEGGVGPYWGVLNASREAKFSWTGPI CHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHCCCCCCHHHHCCCCCCCCEEECCCC VNPDYWKLATIALLVGVLLSLPIVRLRQPTVLQAMVLAITAHGVGAWVSNVFAYWNVHYF CCCCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE VWGSAFALTLGLTLLVPLILIAMARIEEIAAIAFGRAPRRLLTRDKVARDRAAMPAGYCP EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC KVSIHVPAYFEPVEMMKQTLDALARLDYPNYEVVCIINNTPDPAFWQPIQDHCRMLGERF EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHHHH KFINAEKVKGFKAGALRIAMERTAADAEIIGIIDADYVVTPDWLSDLVPAFADPAVGLVQ HHCCHHHHCCCCCCHHEEEHHHCCCCCEEEEEECCCCEECCHHHHHHHHHHCCCCCHHHC APQEHRDEDLSLMHYIMNGEYAGFFDIGMVQRNEENAIIVHGTMCLIRRAAMDMAGGWSS CCHHHCCCHHHHHHHHHCCCCCCEEEECCEEECCCCEEEEEHHHHHHHHHHHHHCCCCCC DTICEDTDLGLAIQELGWQTHYTATRYGSGLLPDTYEAFKKQRHRWAYGGFQIVKKHWQR CCCCCCCCCCHHHHHCCCCCCEEHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH FLPGRSRLTSDQKREFSLGWLNWLGAESLGVVVAILNLIWVPIVAFAGIAIPDKILTIPI HCCCCHHCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IAAFVVSLAHFLILYRLRVAVKPWQMLGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSK HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GGLSRMSIEFQAFWEAVIGALLLIGAAILITTNYLGITELYIFAAVLILESLPFLSAVAI CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH AILELSRINSFDFWRHATIRTAELIGLRPVWVPELAGPGMLQPMQPAPLSAAATKAAEKV HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MRLIAAVILFVTAAHAALWGVLQTKQSAPDFTGMLPSVSYAPFEGTEHPDVDNIPNAERI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH RSDLKKLATITRAIRLYSSTGGVELVPPIAAEVGLKVMLGVWIDKNEDRNEREIAAAVQL HHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHCHHEEEEEEECCCCCCCHHHHHHHHHH ARRNSNVIGVVVGNETLYRGELKPDELIGYIKKVKKSVSVPVTTGEIWNLWRDYPQLASS HHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH VDFIAAHVLPYWEFFNHTQAVDQAVERYQLLREKFPGKRIVIAEFGWPSEGYNRGIADPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC PFQQAWVLRNFVTRAEAIGMEYNIVEGIDQPWKFFEGGVGPYWGVLNASREAKFSWTGPI CHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHCCCCCCHHHHCCCCCCCCEEECCCC VNPDYWKLATIALLVGVLLSLPIVRLRQPTVLQAMVLAITAHGVGAWVSNVFAYWNVHYF CCCCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE VWGSAFALTLGLTLLVPLILIAMARIEEIAAIAFGRAPRRLLTRDKVARDRAAMPAGYCP EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC KVSIHVPAYFEPVEMMKQTLDALARLDYPNYEVVCIINNTPDPAFWQPIQDHCRMLGERF EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHHHH KFINAEKVKGFKAGALRIAMERTAADAEIIGIIDADYVVTPDWLSDLVPAFADPAVGLVQ HHCCHHHHCCCCCCHHEEEHHHCCCCCEEEEEECCCCEECCHHHHHHHHHHCCCCCHHHC APQEHRDEDLSLMHYIMNGEYAGFFDIGMVQRNEENAIIVHGTMCLIRRAAMDMAGGWSS CCHHHCCCHHHHHHHHHCCCCCCEEEECCEEECCCCEEEEEHHHHHHHHHHHHHCCCCCC DTICEDTDLGLAIQELGWQTHYTATRYGSGLLPDTYEAFKKQRHRWAYGGFQIVKKHWQR CCCCCCCCCCHHHHHCCCCCCEEHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH FLPGRSRLTSDQKREFSLGWLNWLGAESLGVVVAILNLIWVPIVAFAGIAIPDKILTIPI HCCCCHHCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IAAFVVSLAHFLILYRLRVAVKPWQMLGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSK HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GGLSRMSIEFQAFWEAVIGALLLIGAAILITTNYLGITELYIFAAVLILESLPFLSAVAI CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH AILELSRINSFDFWRHATIRTAELIGLRPVWVPELAGPGMLQPMQPAPLSAAATKAAEKV HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]