Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is trg [C]
Identifier: 146340425
GI number: 146340425
Start: 3640671
End: 3642740
Strand: Direct
Name: trg [C]
Synonym: BRADO3461
Alternate gene names: 146340425
Gene position: 3640671-3642740 (Clockwise)
Preceding gene: 146340423
Following gene: 146340426
Centisome position: 48.82
GC content: 70.77
Gene sequence:
>2070_bases ATGAAGAAGTCGGTCAGTACTCTGCTGTTGGTGCTCCTGTCGGTCCTTGCCGCAGGCATCCTGGTGTCGACGGCGATCCT GATGAGCGGCGCCGCGGGCCGCTATCGCGAGAGCGTGGCGACCGAGCAGCTCACGGCCGCCGACAAGGCGATCTTCCAGA ACGTCCTGGTGATGCGCGCCCGCCGCGGCGACATGCAGAGCGTGCTGCTGAGCGAGGACGATCCGCGCCCCAGGCTCACC GAATATCAAGGTATCGAGGCGAAGGGCCATGACGGCGTCGCCGCGGCGCTCGCCGGCGTCGACATGCCCGAGCGCGACGA GCTCGTCGCCAGGCTGAAGAGCAGCTGGGAGGCGACCGTGCCCCAGTTCAAGCTGCTGTTCGACGAGGCCGCCAGGCCCA GAGCGGAGCGGGTGCTCGCGCGCACGCAAGGCTGGTACGACGCGATGACCAAGACGCTGGATGCCGCCAACGCCGCGTCG CTGTCGGTCTCAAACCGCGCCTGGATGACCGACCCGGCCATCGCCAAGATGGTGCAGGCCCGCCGTCTCGCCTGGCAGAT CCGCGATCGCTACGGCCTGCAATGTTCGGCGATGCGTCCGAACATCAACAGCTCCAAGCCGCTCGACGAGGCCCAGAAGG CCTCCGTCGCGCAATGGCGCGGCACCGTGGCGGCCGGCTGGTCCGGCCTCGACGACCTCCTGGCGGGCGCCGGCAGCGCC GAGCTCGCCAGCGTCGTCAAGACCTCGCGTGGCGAGGTCGAGGCGGCCCATCAGCGCATGGACCAGCTGATCAAGAGCCT CGACGGCAGCGGCAAGCCGGCGATGCCCGCGCCGGAGTGGAACGCGTTCTGCCAGGGCCCGTTCAACGGCATCATCGCCA TCGGCATGACCGCGCTCGACGCCTCGATCGCCCGCGCCGAGGCGATCAGGACCGCGGCGCTGGCCAGCCTGATCGTGCAG TCGATCGCCTTCATCACCGCGCTCGTCGTCGCCGGCTTCGCGCTGCGCGCCGTGCGCGTCCGCCTGGTGCGCCCGGTGGC GGCGCTGATGCAGGCGATCCAGCGCATCGGCCAGCGCGACTACCAGACGCCCGTGCCGCAATTCGCCAATGCCGACGAGT TCGGCGCGATGGCCGCGGCGCTCGAAGGCCTGCGCGAGAGCGCCGCCATCGCCGAGCGGCTCGCCCGGGAGCGCGACCTC GACCAGGGCAAGCGGCTGGAGCGCTCGCAGGCGATCGACAGCGCCTGCCGGAGTTTTGACGACACCGTGCAGGCGGTGAT CGTCAGCATGGGCAACTCGACCGGCCAGCTCGACCACAGCGCGACCGACGTGCGCAAGCTGGTCGACGAGTCCACCGAGC AGACCGCGGCGGTGGCCAGCGCCGCGGAGACCGCGACCAGCAATCTCGAGACCATCGCCGCCGCTACCGAGGAGCTCACC GCCTCGGTCTCGGAAATCGCGGCCCAGGTGCAGGCCTCCGCGGCGGATGCGCGCCAGGCGGTCGAGCGCGCGGCGCAGAC CAACGCCACCGTCGAGATGCTCGACCGCGCCGCCAACCGCATCGGCGAGGTGGTCAAGATGATCACCGCGATCGCGAGCC AGACCAATCTGCTCGCGCTCAACGCCACGATCGAAGCGGCGCGCGCGGGCGAGGCGGGACGCGGTTTCGCGGTGGTGGCC GGCGAGGTCAAGAACCTGGCGTCGCAGACGGCGACCGCGACCGACGACATCACCCGGCAGATCGCCGAGATCCAGGCCGC GACCGGCGAGTCGGTCGAGGCGATCCGCGCCATCAGCCTCAACATCTCCGGCATCGACGAGAAGATGACGGCGATCGCCG CGGCCGTCGAGCAGCAGCGCGCCGCCACCACCGAGATCTCGCGCAACTTCCAGCAGGCCGCCCAGGGCACCCGCGCCGTC ACCGACACGATCGGCGCGGTCGCCGCGCTCAACCGCCAGACCGGCAACGCGGGCGCCGCGATGGTCGACTCGGTGCGCCG CATGTCGACCGATGCCGATCGCTTTCGTGTGGCGGTCGAGGGCTTCCTCGGCACCGTGCGCAAGGCGTGA
Upstream 100 bases:
>100_bases GCAAATGATGACCTCGGCTGATCGATGTGGCGGCGCATGGTTAAGAAAGAATTTGTGCAAATGCGTCATTCTTCCACTTT GTGGTGTGGGGAATTGCGTG
Downstream 100 bases:
>100_bases GGCGGCGATCGCCGGTGGCGGCGCGAGGCGCGCGTCGTCGCCGCGACGTCAGCTGAACGCGTGTCAAACAGCAGCCGAGC AGATCTCTGTGAGCGGACGC
Product: putative methyl-accepting chemotaxis receptor/sensory transducer protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 689; Mature: 689
Protein sequence:
>689_residues MKKSVSTLLLVLLSVLAAGILVSTAILMSGAAGRYRESVATEQLTAADKAIFQNVLVMRARRGDMQSVLLSEDDPRPRLT EYQGIEAKGHDGVAAALAGVDMPERDELVARLKSSWEATVPQFKLLFDEAARPRAERVLARTQGWYDAMTKTLDAANAAS LSVSNRAWMTDPAIAKMVQARRLAWQIRDRYGLQCSAMRPNINSSKPLDEAQKASVAQWRGTVAAGWSGLDDLLAGAGSA ELASVVKTSRGEVEAAHQRMDQLIKSLDGSGKPAMPAPEWNAFCQGPFNGIIAIGMTALDASIARAEAIRTAALASLIVQ SIAFITALVVAGFALRAVRVRLVRPVAALMQAIQRIGQRDYQTPVPQFANADEFGAMAAALEGLRESAAIAERLARERDL DQGKRLERSQAIDSACRSFDDTVQAVIVSMGNSTGQLDHSATDVRKLVDESTEQTAAVASAAETATSNLETIAAATEELT ASVSEIAAQVQASAADARQAVERAAQTNATVEMLDRAANRIGEVVKMITAIASQTNLLALNATIEAARAGEAGRGFAVVA GEVKNLASQTATATDDITRQIAEIQAATGESVEAIRAISLNISGIDEKMTAIAAAVEQQRAATTEISRNFQQAAQGTRAV TDTIGAVAALNRQTGNAGAAMVDSVRRMSTDADRFRVAVEGFLGTVRKA
Sequences:
>Translated_689_residues MKKSVSTLLLVLLSVLAAGILVSTAILMSGAAGRYRESVATEQLTAADKAIFQNVLVMRARRGDMQSVLLSEDDPRPRLT EYQGIEAKGHDGVAAALAGVDMPERDELVARLKSSWEATVPQFKLLFDEAARPRAERVLARTQGWYDAMTKTLDAANAAS LSVSNRAWMTDPAIAKMVQARRLAWQIRDRYGLQCSAMRPNINSSKPLDEAQKASVAQWRGTVAAGWSGLDDLLAGAGSA ELASVVKTSRGEVEAAHQRMDQLIKSLDGSGKPAMPAPEWNAFCQGPFNGIIAIGMTALDASIARAEAIRTAALASLIVQ SIAFITALVVAGFALRAVRVRLVRPVAALMQAIQRIGQRDYQTPVPQFANADEFGAMAAALEGLRESAAIAERLARERDL DQGKRLERSQAIDSACRSFDDTVQAVIVSMGNSTGQLDHSATDVRKLVDESTEQTAAVASAAETATSNLETIAAATEELT ASVSEIAAQVQASAADARQAVERAAQTNATVEMLDRAANRIGEVVKMITAIASQTNLLALNATIEAARAGEAGRGFAVVA GEVKNLASQTATATDDITRQIAEIQAATGESVEAIRAISLNISGIDEKMTAIAAAVEQQRAATTEISRNFQQAAQGTRAV TDTIGAVAALNRQTGNAGAAMVDSVRRMSTDADRFRVAVEGFLGTVRKA >Mature_689_residues MKKSVSTLLLVLLSVLAAGILVSTAILMSGAAGRYRESVATEQLTAADKAIFQNVLVMRARRGDMQSVLLSEDDPRPRLT EYQGIEAKGHDGVAAALAGVDMPERDELVARLKSSWEATVPQFKLLFDEAARPRAERVLARTQGWYDAMTKTLDAANAAS LSVSNRAWMTDPAIAKMVQARRLAWQIRDRYGLQCSAMRPNINSSKPLDEAQKASVAQWRGTVAAGWSGLDDLLAGAGSA ELASVVKTSRGEVEAAHQRMDQLIKSLDGSGKPAMPAPEWNAFCQGPFNGIIAIGMTALDASIARAEAIRTAALASLIVQ SIAFITALVVAGFALRAVRVRLVRPVAALMQAIQRIGQRDYQTPVPQFANADEFGAMAAALEGLRESAAIAERLARERDL DQGKRLERSQAIDSACRSFDDTVQAVIVSMGNSTGQLDHSATDVRKLVDESTEQTAAVASAAETATSNLETIAAATEELT ASVSEIAAQVQASAADARQAVERAAQTNATVEMLDRAANRIGEVVKMITAIASQTNLLALNATIEAARAGEAGRGFAVVA GEVKNLASQTATATDDITRQIAEIQAATGESVEAIRAISLNISGIDEKMTAIAAAVEQQRAATTEISRNFQQAAQGTRAV TDTIGAVAALNRQTGNAGAAMVDSVRRMSTDADRFRVAVEGFLGTVRKA
Specific function: May bind attractants or detect changes in the extracellular concentration of soluble sugars [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1787690, Length=372, Percent_Identity=27.6881720430108, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1788195, Length=195, Percent_Identity=38.4615384615385, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1788194, Length=239, Percent_Identity=33.0543933054393, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI2367378, Length=260, Percent_Identity=33.4615384615385, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1789453, Length=219, Percent_Identity=31.9634703196347, Blast_Score=87, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 72901; Mature: 72901
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSVSTLLLVLLSVLAAGILVSTAILMSGAAGRYRESVATEQLTAADKAIFQNVLVMRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRGDMQSVLLSEDDPRPRLTEYQGIEAKGHDGVAAALAGVDMPERDELVARLKSSWEATV HCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC PQFKLLFDEAARPRAERVLARTQGWYDAMTKTLDAANAASLSVSNRAWMTDPAIAKMVQA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHH RRLAWQIRDRYGLQCSAMRPNINSSKPLDEAQKASVAQWRGTVAAGWSGLDDLLAGAGSA HHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHCCCHH ELASVVKTSRGEVEAAHQRMDQLIKSLDGSGKPAMPAPEWNAFCQGPFNGIIAIGMTALD HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ASIARAEAIRTAALASLIVQSIAFITALVVAGFALRAVRVRLVRPVAALMQAIQRIGQRD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YQTPVPQFANADEFGAMAAALEGLRESAAIAERLARERDLDQGKRLERSQAIDSACRSFD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DTVQAVIVSMGNSTGQLDHSATDVRKLVDESTEQTAAVASAAETATSNLETIAAATEELT HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASVSEIAAQVQASAADARQAVERAAQTNATVEMLDRAANRIGEVVKMITAIASQTNLLAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE NATIEAARAGEAGRGFAVVAGEVKNLASQTATATDDITRQIAEIQAATGESVEAIRAISL ECHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHEE NISGIDEKMTAIAAAVEQQRAATTEISRNFQQAAQGTRAVTDTIGAVAALNRQTGNAGAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH MVDSVRRMSTDADRFRVAVEGFLGTVRKA HHHHHHHHCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKSVSTLLLVLLSVLAAGILVSTAILMSGAAGRYRESVATEQLTAADKAIFQNVLVMRA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRGDMQSVLLSEDDPRPRLTEYQGIEAKGHDGVAAALAGVDMPERDELVARLKSSWEATV HCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC PQFKLLFDEAARPRAERVLARTQGWYDAMTKTLDAANAASLSVSNRAWMTDPAIAKMVQA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHH RRLAWQIRDRYGLQCSAMRPNINSSKPLDEAQKASVAQWRGTVAAGWSGLDDLLAGAGSA HHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHCCCHH ELASVVKTSRGEVEAAHQRMDQLIKSLDGSGKPAMPAPEWNAFCQGPFNGIIAIGMTALD HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ASIARAEAIRTAALASLIVQSIAFITALVVAGFALRAVRVRLVRPVAALMQAIQRIGQRD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YQTPVPQFANADEFGAMAAALEGLRESAAIAERLARERDLDQGKRLERSQAIDSACRSFD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DTVQAVIVSMGNSTGQLDHSATDVRKLVDESTEQTAAVASAAETATSNLETIAAATEELT HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASVSEIAAQVQASAADARQAVERAAQTNATVEMLDRAANRIGEVVKMITAIASQTNLLAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE NATIEAARAGEAGRGFAVVAGEVKNLASQTATATDDITRQIAEIQAATGESVEAIRAISL ECHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHEE NISGIDEKMTAIAAAVEQQRAATTEISRNFQQAAQGTRAVTDTIGAVAALNRQTGNAGAA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH MVDSVRRMSTDADRFRVAVEGFLGTVRKA HHHHHHHHCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8436949 [H]