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The map label for this gene is ydiU [C]

Identifier: 146340331

GI number: 146340331

Start: 3549328

End: 3550803

Strand: Reverse

Name: ydiU [C]

Synonym: BRADO3358

Alternate gene names: 146340331

Gene position: 3550803-3549328 (Counterclockwise)

Preceding gene: 146340334

Following gene: 146340330

Centisome position: 47.62

GC content: 69.04

Gene sequence:

>1476_bases
ATGACCGTGCATTTCCCCTTCCAGAACTCCTACGTCGCGCTGCCGGACAATTTCTTCGCCCGGGTGGCCCCCACTCCCGT
CGCCGCGCCGCGCCTAATCAAGCTGAACCGGCCGCTGGCCGAGGAGCTCGGGTTGAACCCGGCCGAGCTGGAGACGCCCG
AAGGCGCCGAGATCCTGGCCGGCAAGACCGTGCCGGAGGGCGCCGAGCCGATCGCGATGGCTTATGCCGGCCACCAGTTC
GGGCATTTCGTCCCGCAGCTCGGCGACGGAAGGGCGGTGCTGCTCGGCGAGGTGGTCGACCGCAACGGCGTCCGCCGCGA
CATCCAGCTCAAGGGCTCCGGCCCGACCCCGTTCTCGCGCCGCGGCGACGGCCGGGCGGCGCTCGGGCCGGTGCTGCGCG
AATACATCGTCAGCGAGGCCATGGCCGCGCTGGGCATCCCGACCACCCGGTCGCTGGCCGCCGTCGTAACCGGCGAGCAG
GTCTATCGCGGGACGGCGCTCCCCGGCGCAGTGCTGACCCGCGTCGCGACCAGCCACATCCGGGTCGGCACGTTCCAGTA
TTTCGCCGCCCGCCAGGACGTCGAGGCCGTGCGCCGGCTCGCCGACCACGTGATCGGCCGGCACTATCCGGATCTCGCCG
GCACGGAGCGGCCGTATCATGCCCTGCTGGCTGCCGTGATCAGCCGCCAGGCGAAGCTGATTGCCGACTGGCTCCTGGTC
GGCTTCATTCATGGCGTCATGAACACTGACAACACGTCGGTGTCAGGCGAGACCATCGATTACGGCCCCTGCGCGTTCAT
GGACGCTTATGACCCCAAGCAGGTGTTCTCCTCGATCGACGAGTTCGGCCGCTACGCCTTCGCCAACCAGCCGCGCATCG
CGATGTGGAACTTGACCCGGCTGGCCGAATGCCTGCTGCCGCTGTTCGGCGACGACAAGGACCAGGCGATCAAGGAAGCG
GAGACTGCGCTCGACGGCTTCGCGGCCCAGTTCACGGAAGCCCACCAGGCGGGCCTGCGCCGCAAGCTCGGCCTGTTCAC
GCAACGCGACGGCGACCAGCCGCTGGCGCAAGCGCTGTTCGATGCGATGGCGCTGGCCAAGGCGGACTTCACCCTGACAT
TCCGCAGGCTCAGCGATGCCGCCGGCAGTGGCGATCTCAGCGTGGTCCGGGCGCTGTTCGAGGATCCCACGGGGTTCGAC
GAATGGGCCGCCCGCTGGCAGCAGCGCCTCGCCGTGGAACCGCAGACGCCCGCCGAGCGGCGCGCGGCGATGCGCAAGGT
CAATCCGGCCTTCATCCCGCGCAACCACCGCATCGAGGCGGTGATCACGGCGGCAGTCGAGAACGATGACTATGCGCCCT
TTGAGGAACTCCATGCCGTGCTGGCGAAGCCCTACGACGATCAGCCGGACCGGGCCGATTATGCCGAGCCGCCGCAGCCC
GAGGAGCGCGTGCTGCAGACCTTCTGTGGCACCTGA

Upstream 100 bases:

>100_bases
GCAACCGCCGCGTAGCCGCCGAATTGAGCTGGCGCCGAAACGCTCATCTGGCGGTCGTTTGGGCTCGAAAAGCGGCGGTC
TCGCGCTTATCTTGGGAGGC

Downstream 100 bases:

>100_bases
CACGTTCTTAACTTCGCGTCCACCATCCCTGGCAGCGCGCCGGGGTCCTTAAGAAACGATCAACGCCGCCCCGACAAGTT
GAAGCAACACGTCGGGGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MTVHFPFQNSYVALPDNFFARVAPTPVAAPRLIKLNRPLAEELGLNPAELETPEGAEILAGKTVPEGAEPIAMAYAGHQF
GHFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQ
VYRGTALPGAVLTRVATSHIRVGTFQYFAARQDVEAVRRLADHVIGRHYPDLAGTERPYHALLAAVISRQAKLIADWLLV
GFIHGVMNTDNTSVSGETIDYGPCAFMDAYDPKQVFSSIDEFGRYAFANQPRIAMWNLTRLAECLLPLFGDDKDQAIKEA
ETALDGFAAQFTEAHQAGLRRKLGLFTQRDGDQPLAQALFDAMALAKADFTLTFRRLSDAAGSGDLSVVRALFEDPTGFD
EWAARWQQRLAVEPQTPAERRAAMRKVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLAKPYDDQPDRADYAEPPQP
EERVLQTFCGT

Sequences:

>Translated_491_residues
MTVHFPFQNSYVALPDNFFARVAPTPVAAPRLIKLNRPLAEELGLNPAELETPEGAEILAGKTVPEGAEPIAMAYAGHQF
GHFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQ
VYRGTALPGAVLTRVATSHIRVGTFQYFAARQDVEAVRRLADHVIGRHYPDLAGTERPYHALLAAVISRQAKLIADWLLV
GFIHGVMNTDNTSVSGETIDYGPCAFMDAYDPKQVFSSIDEFGRYAFANQPRIAMWNLTRLAECLLPLFGDDKDQAIKEA
ETALDGFAAQFTEAHQAGLRRKLGLFTQRDGDQPLAQALFDAMALAKADFTLTFRRLSDAAGSGDLSVVRALFEDPTGFD
EWAARWQQRLAVEPQTPAERRAAMRKVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLAKPYDDQPDRADYAEPPQP
EERVLQTFCGT
>Mature_490_residues
TVHFPFQNSYVALPDNFFARVAPTPVAAPRLIKLNRPLAEELGLNPAELETPEGAEILAGKTVPEGAEPIAMAYAGHQFG
HFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQV
YRGTALPGAVLTRVATSHIRVGTFQYFAARQDVEAVRRLADHVIGRHYPDLAGTERPYHALLAAVISRQAKLIADWLLVG
FIHGVMNTDNTSVSGETIDYGPCAFMDAYDPKQVFSSIDEFGRYAFANQPRIAMWNLTRLAECLLPLFGDDKDQAIKEAE
TALDGFAAQFTEAHQAGLRRKLGLFTQRDGDQPLAQALFDAMALAKADFTLTFRRLSDAAGSGDLSVVRALFEDPTGFDE
WAARWQQRLAVEPQTPAERRAAMRKVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLAKPYDDQPDRADYAEPPQPE
ERVLQTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=394, Percent_Identity=40.8629441624365, Blast_Score=269, Evalue=4e-72,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=42.6778242677824, Blast_Score=358, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6325034, Length=338, Percent_Identity=34.6153846153846, Blast_Score=188, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3358_BRASO (A4YTC3)

Other databases:

- EMBL:   CU234118
- RefSeq:   YP_001205379.1
- STRING:   A4YTC3
- GeneID:   5118538
- GenomeReviews:   CU234118_GR
- KEGG:   bra:BRADO3358
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- ProtClustDB:   PRK00029
- BioCyc:   BSP376:BRADO3358-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 53804; Mature: 53673

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVHFPFQNSYVALPDNFFARVAPTPVAAPRLIKLNRPLAEELGLNPAELETPEGAEILA
CEEECCCCCCEEECCCCHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHCCCCCCCEEEE
GKTVPEGAEPIAMAYAGHQFGHFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSGPTPFSR
CCCCCCCCCCHHHHHHCCHHHHHCCCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCCCC
RGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQVYRGTALPGAVLTRVATSHI
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECHHHHCCCCCCHHHHHHHHHHHE
RVGTFQYFAARQDVEAVRRLADHVIGRHYPDLAGTERPYHALLAAVISRQAKLIADWLLV
EECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GFIHGVMNTDNTSVSGETIDYGPCAFMDAYDPKQVFSSIDEFGRYAFANQPRIAMWNLTR
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
LAECLLPLFGDDKDQAIKEAETALDGFAAQFTEAHQAGLRRKLGLFTQRDGDQPLAQALF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DAMALAKADFTLTFRRLSDAAGSGDLSVVRALFEDPTGFDEWAARWQQRLAVEPQTPAER
HHHHHHHCCHHEEHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH
RAAMRKVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLAKPYDDQPDRADYAEPPQP
HHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
EERVLQTFCGT
HHHHHHHHCCC
>Mature Secondary Structure 
TVHFPFQNSYVALPDNFFARVAPTPVAAPRLIKLNRPLAEELGLNPAELETPEGAEILA
EEECCCCCCEEECCCCHHHHCCCCCCCCCCEEECCCCHHHHHCCCHHHCCCCCCCEEEE
GKTVPEGAEPIAMAYAGHQFGHFVPQLGDGRAVLLGEVVDRNGVRRDIQLKGSGPTPFSR
CCCCCCCCCCHHHHHHCCHHHHHCCCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCCCC
RGDGRAALGPVLREYIVSEAMAALGIPTTRSLAAVVTGEQVYRGTALPGAVLTRVATSHI
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECHHHHCCCCCCHHHHHHHHHHHE
RVGTFQYFAARQDVEAVRRLADHVIGRHYPDLAGTERPYHALLAAVISRQAKLIADWLLV
EECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GFIHGVMNTDNTSVSGETIDYGPCAFMDAYDPKQVFSSIDEFGRYAFANQPRIAMWNLTR
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
LAECLLPLFGDDKDQAIKEAETALDGFAAQFTEAHQAGLRRKLGLFTQRDGDQPLAQALF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DAMALAKADFTLTFRRLSDAAGSGDLSVVRALFEDPTGFDEWAARWQQRLAVEPQTPAER
HHHHHHHCCHHEEHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH
RAAMRKVNPAFIPRNHRIEAVITAAVENDDYAPFEELHAVLAKPYDDQPDRADYAEPPQP
HHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
EERVLQTFCGT
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA