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The map label for this gene is rsmB [H]

Identifier: 146340153

GI number: 146340153

Start: 3370989

End: 3372287

Strand: Direct

Name: rsmB [H]

Synonym: BRADO3168

Alternate gene names: 146340153

Gene position: 3370989-3372287 (Clockwise)

Preceding gene: 146340152

Following gene: 146340154

Centisome position: 45.21

GC content: 71.13

Gene sequence:

>1299_bases
ATGACCCCCGCCGCCCGGCTGTCCGCCGCCATCGACATCATCGAGACCATCGAGGCCGAGCGCGCGCCGGCGGCCAAGGC
GCTGAAGGATTGGGGCACCAGCCACCGCTTCGCCGGCGCCGGCGACCGCGCCGCCATCGCCGGCCTGGTCTGGGACGTGC
TCCGCCGCCGCGCCTCCAGCGCTTACGTGATGGAGAACGATACGGCGCGGGCGCGGGTGCTCGGCATGCTGAAGCTCGAG
CGCGGTCTCGACGTGCCGACCATCGCCGCGATGTGCGACGGCAACCGCTTCGCGCCATCGCCGCTCACGGCGCAGGAGGA
GCGGGCGCTGGCCTCGCGCACGACGGAGGGCGCACCGCCGCCGGTCTCCGGCGACTATCCCGACTGGCTCGACCCGTATC
TCGCTGCCGTGTTCGGCGACGACCGCGTTGCGGAAGCCACGGCGATGGCCAGCCGCGCGCCGCTCGACCTCCGCGTCAAC
GCGCTCAAGGCCAAGCGCGAGAAGGTGCAGGCCTCGCTGAAGCATCTCGGCGCTGTGCCGACACCATGGTCGCCGCTCGG
CCTGCGCATCACGCTCGGGGCCGACGCGCGCAATCCCGGCGTTCATGCCGAGGAGGATTTCATCAAGGGCGCCATCGAAG
TCCAGGACGAGGGCTCGCAGCTCGCAGCACTCTTCACCGCCGCCAAGCCCGGCGAGCAGGTCATCGACCTCTGCGCCGGC
GCCGGCGGCAAGACGCTCGCGCTGGCGGCGATGATGGGCGGCAAGGGCCGCCTGATCGCCACCGACGCCGACAAGCGCCA
GCTCGCCCCGATCCATGAGCGCCTCTCCCGCGCCGGCGTCCACAATGCCGAGATCCGCACGCCGAAGGGCGACGCCGACC
CGCTCGCCGACATCAAGTCCTCCGCCGATCTGGTCGTCATCGACGCCCCCTGCACGGGCACCGGCACCTGGCGCCGCAAC
CCCGACGCCAAATGGCGCATGCGCCCGGGTGCATTGGAGATCCGCCTGAAGGACCAGGCCGAGGTGCTGGAGCGCGCCGC
GGGCTTGGTCAAACCCGGCGGCCGCATCGCCTACATCACCTGCTCGGTGCTCCAGCCGGAAAACGGTGACCAGGTGCGGG
CGTTCGTGGCGCGGCACAAGGAATTCGCAGTTCAGCCCCCGGACCAGACCGCCACTGTCCTCTGGGACAAGTCGGAGCCG
TTCGCCGAGGCCGCATTGAAGACGCCCGAAGGCTGGCTGATGACCCCCCGCCGGACGGGCACGGACGGTTTCTTCGTGTC
GGTCCTGAAGAAGGCGTAA

Upstream 100 bases:

>100_bases
GCGCTCCCTGGCCTGGACCGCCTCGGCGCTGGTGCTGCTGGCGATGTGGCTGTATTTCGCCCTGAAGATGCTTCTTCTGA
TCTGAGACTGGATACCTCAA

Downstream 100 bases:

>100_bases
GCCCATCCGCCGTCTGCAGGTCCCTCCGCGGTCAAAGCCCTCTCCGCCGTCATTGCGAGCGCAGCGAAGCAATCCAGAGT
CCCACCCGAGCCCCTGGATT

Product: putative SUN-family protein, RNA methyltransferase

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MTPAARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAGAGDRAAIAGLVWDVLRRRASSAYVMENDTARARVLGMLKLE
RGLDVPTIAAMCDGNRFAPSPLTAQEERALASRTTEGAPPPVSGDYPDWLDPYLAAVFGDDRVAEATAMASRAPLDLRVN
ALKAKREKVQASLKHLGAVPTPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQDEGSQLAALFTAAKPGEQVIDLCAG
AGGKTLALAAMMGGKGRLIATDADKRQLAPIHERLSRAGVHNAEIRTPKGDADPLADIKSSADLVVIDAPCTGTGTWRRN
PDAKWRMRPGALEIRLKDQAEVLERAAGLVKPGGRIAYITCSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWDKSEP
FAEAALKTPEGWLMTPRRTGTDGFFVSVLKKA

Sequences:

>Translated_432_residues
MTPAARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAGAGDRAAIAGLVWDVLRRRASSAYVMENDTARARVLGMLKLE
RGLDVPTIAAMCDGNRFAPSPLTAQEERALASRTTEGAPPPVSGDYPDWLDPYLAAVFGDDRVAEATAMASRAPLDLRVN
ALKAKREKVQASLKHLGAVPTPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQDEGSQLAALFTAAKPGEQVIDLCAG
AGGKTLALAAMMGGKGRLIATDADKRQLAPIHERLSRAGVHNAEIRTPKGDADPLADIKSSADLVVIDAPCTGTGTWRRN
PDAKWRMRPGALEIRLKDQAEVLERAAGLVKPGGRIAYITCSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWDKSEP
FAEAALKTPEGWLMTPRRTGTDGFFVSVLKKA
>Mature_431_residues
TPAARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAGAGDRAAIAGLVWDVLRRRASSAYVMENDTARARVLGMLKLER
GLDVPTIAAMCDGNRFAPSPLTAQEERALASRTTEGAPPPVSGDYPDWLDPYLAAVFGDDRVAEATAMASRAPLDLRVNA
LKAKREKVQASLKHLGAVPTPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQDEGSQLAALFTAAKPGEQVIDLCAGA
GGKTLALAAMMGGKGRLIATDADKRQLAPIHERLSRAGVHNAEIRTPKGDADPLADIKSSADLVVIDAPCTGTGTWRRNP
DAKWRMRPGALEIRLKDQAEVLERAAGLVKPGGRIAYITCSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWDKSEPF
AEAALKTPEGWLMTPRRTGTDGFFVSVLKKA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=292, Percent_Identity=28.7671232876712, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI76150623, Length=292, Percent_Identity=28.7671232876712, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI23199998, Length=247, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI8922322, Length=243, Percent_Identity=31.2757201646091, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI270288818, Length=243, Percent_Identity=31.2757201646091, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI270288816, Length=247, Percent_Identity=31.5789473684211, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI32698918, Length=186, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI2367212, Length=255, Percent_Identity=30.9803921568627, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081985, Length=290, Percent_Identity=30.3448275862069, Blast_Score=98, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17536757, Length=320, Percent_Identity=27.8125, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI115534021, Length=234, Percent_Identity=29.4871794871795, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71998419, Length=234, Percent_Identity=29.4871794871795, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25143471, Length=168, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324268, Length=278, Percent_Identity=27.6978417266187, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6319447, Length=219, Percent_Identity=29.6803652968037, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI22024126, Length=306, Percent_Identity=27.4509803921569, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 46190; Mature: 46059

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAGAGDRAAIAGLVWDVLRRRASS
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
AYVMENDTARARVLGMLKLERGLDVPTIAAMCDGNRFAPSPLTAQEERALASRTTEGAPP
CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
PVSGDYPDWLDPYLAAVFGDDRVAEATAMASRAPLDLRVNALKAKREKVQASLKHLGAVP
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
TPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQDEGSQLAALFTAAKPGEQVIDLCAG
CCCCCCCEEEEECCCCCCCCCCCCHHHHCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
AGGKTLALAAMMGGKGRLIATDADKRQLAPIHERLSRAGVHNAEIRTPKGDADPLADIKS
CCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHCC
SADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRLKDQAEVLERAAGLVKPGGRIAYIT
CCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHCCCCCCCEEEEEE
CSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWDKSEPFAEAALKTPEGWLMTPRRTG
EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHCCCCCCEECCCCCC
TDGFFVSVLKKA
CCHHHHHHHHCC
>Mature Secondary Structure 
TPAARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAGAGDRAAIAGLVWDVLRRRASS
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
AYVMENDTARARVLGMLKLERGLDVPTIAAMCDGNRFAPSPLTAQEERALASRTTEGAPP
CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
PVSGDYPDWLDPYLAAVFGDDRVAEATAMASRAPLDLRVNALKAKREKVQASLKHLGAVP
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCC
TPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQDEGSQLAALFTAAKPGEQVIDLCAG
CCCCCCCEEEEECCCCCCCCCCCCHHHHCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
AGGKTLALAAMMGGKGRLIATDADKRQLAPIHERLSRAGVHNAEIRTPKGDADPLADIKS
CCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHCC
SADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRLKDQAEVLERAAGLVKPGGRIAYIT
CCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHCCCCCCCEEEEEE
CSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWDKSEPFAEAALKTPEGWLMTPRRTG
EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHCCCCCCEECCCCCC
TDGFFVSVLKKA
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]