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The map label for this gene is yncB [H]

Identifier: 146340151

GI number: 146340151

Start: 3369479

End: 3370501

Strand: Direct

Name: yncB [H]

Synonym: BRADO3166

Alternate gene names: 146340151

Gene position: 3369479-3370501 (Clockwise)

Preceding gene: 146340150

Following gene: 146340152

Centisome position: 45.19

GC content: 67.64

Gene sequence:

>1023_bases
ATGTCCCAAGCCAAGCGCATCGTGCTCGCCGCGCGTCCCGTCGGCGAGCCTAAGCCCAGCGATTTCCGCCTCGAGGATTA
CGCCGTGCCGACGCCCGGCGCCGGCGAGGTGCTGCTGCGCACGATCTGGCTGTCGCTCGATCCCTACATGCGCGGCCGCA
TGAGCGACGGGCCGTCCTATGCCCAGCCGGTGCCGGTCGGCGGCGTGATGGAGGCGGGGACCGTGTGCGAGGTGGTGGCC
TCCAACAATCCAGCCTTCAAGCCCGGCGACATCGTGCTGGCCCGCGCCGGCTGGCAGACGCATGCGATCTCCGACGGCCG
TGGTCTCGCCAAGGTCGACCCGAGCCTCGCGCCGATCTCGACCGCGGTCGGCGTGCTCGGCATGCCCGGCATGACCGCCT
ATACCGGCCTGCTCGACATCGGCCAGCCCAAGGCCGGCGAGACCGTGGTGGTCGCCGCCGCCTCCGGTGCGGTCGGCTCG
GCGGTGGGGCAGATCGCCAAGATCAAGGGCGCCCGCGCCATCGGCATCGCCGGCGGCAAGGACAAATGCGACTACGTTCG
ATCCGAATTCGGCTTCGACGACTGCCTCGACCATCGCGACCCCGATCTCGCGGCCAAGCTGAAAGTGGCGTGCCCTGATG
GCATCGACGTCTATTTCGAGAATGTCGGCGGCCCGGTGTTCGAGGCGGTGTTCCCGCTGTTCAACGCCTTCGCCCGCATG
CCCGTCTGCGGCCTGATCGCGCATTACAACGACACCCAGTCGGCCTCGCCGAAATGGGCCGGCGCGCTGATGCGCAACGT
GCTGACCAAGCGTCTCCTGATCCGCGGCTTCATCGTCTCCGACTTCGCCTCCCGCCACGGCGACTTCATCAAGGACATGT
CGGCCTGGGTCCGCGACGGCAAGGTCAAGTATAAGGAGCACGTCACCGAAGGTCTGGAGAATGCGCCGGATGCGTTCATG
GGCCTGCTCAAGGGCGCCAATTTCGGCAAGCAGCTGGTGCGGGTCGGGCCGGATAAAGCCTGA

Upstream 100 bases:

>100_bases
CGGCGCGCGCAGCCCTGGATTGCTTCGTCGCTTCGCTCCTCGCAATGACGGTGCCCTCGGGGCATAAAGGCTCCACAACC
AACAAAGAAGAGGAAACACC

Downstream 100 bases:

>100_bases
GCCACACTTGATGTGAAAGTTCAGCGCGGCCGTAAATTCACGGGAACCACTGGGGCTTATCGGGAGTCCTGAGGGAACCG
GTTCATTCAGAGGGCCCGGC

Product: putative NADP-dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSQAKRIVLAARPVGEPKPSDFRLEDYAVPTPGAGEVLLRTIWLSLDPYMRGRMSDGPSYAQPVPVGGVMEAGTVCEVVA
SNNPAFKPGDIVLARAGWQTHAISDGRGLAKVDPSLAPISTAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGS
AVGQIAKIKGARAIGIAGGKDKCDYVRSEFGFDDCLDHRDPDLAAKLKVACPDGIDVYFENVGGPVFEAVFPLFNAFARM
PVCGLIAHYNDTQSASPKWAGALMRNVLTKRLLIRGFIVSDFASRHGDFIKDMSAWVRDGKVKYKEHVTEGLENAPDAFM
GLLKGANFGKQLVRVGPDKA

Sequences:

>Translated_340_residues
MSQAKRIVLAARPVGEPKPSDFRLEDYAVPTPGAGEVLLRTIWLSLDPYMRGRMSDGPSYAQPVPVGGVMEAGTVCEVVA
SNNPAFKPGDIVLARAGWQTHAISDGRGLAKVDPSLAPISTAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGS
AVGQIAKIKGARAIGIAGGKDKCDYVRSEFGFDDCLDHRDPDLAAKLKVACPDGIDVYFENVGGPVFEAVFPLFNAFARM
PVCGLIAHYNDTQSASPKWAGALMRNVLTKRLLIRGFIVSDFASRHGDFIKDMSAWVRDGKVKYKEHVTEGLENAPDAFM
GLLKGANFGKQLVRVGPDKA
>Mature_339_residues
SQAKRIVLAARPVGEPKPSDFRLEDYAVPTPGAGEVLLRTIWLSLDPYMRGRMSDGPSYAQPVPVGGVMEAGTVCEVVAS
NNPAFKPGDIVLARAGWQTHAISDGRGLAKVDPSLAPISTAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGSA
VGQIAKIKGARAIGIAGGKDKCDYVRSEFGFDDCLDHRDPDLAAKLKVACPDGIDVYFENVGGPVFEAVFPLFNAFARMP
VCGLIAHYNDTQSASPKWAGALMRNVLTKRLLIRGFIVSDFASRHGDFIKDMSAWVRDGKVKYKEHVTEGLENAPDAFMG
LLKGANFGKQLVRVGPDKA

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=342, Percent_Identity=42.3976608187134, Blast_Score=247, Evalue=1e-65,
Organism=Homo sapiens, GI226059133, Length=342, Percent_Identity=42.3976608187134, Blast_Score=247, Evalue=1e-65,
Organism=Homo sapiens, GI226246682, Length=351, Percent_Identity=36.1823361823362, Blast_Score=220, Evalue=1e-57,
Organism=Homo sapiens, GI226246680, Length=351, Percent_Identity=36.1823361823362, Blast_Score=220, Evalue=1e-57,
Organism=Homo sapiens, GI22748929, Length=351, Percent_Identity=36.1823361823362, Blast_Score=220, Evalue=1e-57,
Organism=Homo sapiens, GI226056130, Length=314, Percent_Identity=40.1273885350318, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI28557745, Length=325, Percent_Identity=25.8461538461538, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI194239674, Length=256, Percent_Identity=29.6875, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI13236495, Length=256, Percent_Identity=29.6875, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI194239676, Length=225, Percent_Identity=31.1111111111111, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI226510941, Length=339, Percent_Identity=55.4572271386431, Blast_Score=379, Evalue=1e-106,
Organism=Caenorhabditis elegans, GI133901712, Length=352, Percent_Identity=30.9659090909091, Blast_Score=161, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI133901710, Length=352, Percent_Identity=30.9659090909091, Blast_Score=161, Evalue=4e-40,
Organism=Saccharomyces cerevisiae, GI6323504, Length=371, Percent_Identity=31.266846361186, Blast_Score=137, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35973; Mature: 35842

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQAKRIVLAARPVGEPKPSDFRLEDYAVPTPGAGEVLLRTIWLSLDPYMRGRMSDGPSY
CCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCC
AQPVPVGGVMEAGTVCEVVASNNPAFKPGDIVLARAGWQTHAISDGRGLAKVDPSLAPIS
CCCCCCCCHHCCCCEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCEECCCCHHHHH
TAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGSAVGQIAKIKGARAIGIAGGK
HHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC
DKCDYVRSEFGFDDCLDHRDPDLAAKLKVACPDGIDVYFENVGGPVFEAVFPLFNAFARM
CHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHC
PVCGLIAHYNDTQSASPKWAGALMRNVLTKRLLIRGFIVSDFASRHGDFIKDMSAWVRDG
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
KVKYKEHVTEGLENAPDAFMGLLKGANFGKQLVRVGPDKA
CHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
SQAKRIVLAARPVGEPKPSDFRLEDYAVPTPGAGEVLLRTIWLSLDPYMRGRMSDGPSY
CCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCC
AQPVPVGGVMEAGTVCEVVASNNPAFKPGDIVLARAGWQTHAISDGRGLAKVDPSLAPIS
CCCCCCCCHHCCCCEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCEECCCCHHHHH
TAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGSAVGQIAKIKGARAIGIAGGK
HHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC
DKCDYVRSEFGFDDCLDHRDPDLAAKLKVACPDGIDVYFENVGGPVFEAVFPLFNAFARM
CHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHC
PVCGLIAHYNDTQSASPKWAGALMRNVLTKRLLIRGFIVSDFASRHGDFIKDMSAWVRDG
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
KVKYKEHVTEGLENAPDAFMGLLKGANFGKQLVRVGPDKA
CHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]