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The map label for this gene is yddS [C]

Identifier: 146339624

GI number: 146339624

Start: 2805699

End: 2807225

Strand: Direct

Name: yddS [C]

Synonym: BRADO2617

Alternate gene names: 146339624

Gene position: 2805699-2807225 (Clockwise)

Preceding gene: 146339623

Following gene: 146339625

Centisome position: 37.63

GC content: 66.34

Gene sequence:

>1527_bases
GTGCTCGCGACGCTGCTGACAGGCGCCGTGAACGCCGGCGCTGAGACGCTGCTGCGGACCAGGCTCAACGCCGACATCCG
CTCGACCGACCCCGGCACCAATCGCGATGCCAACACCGACGGCGTGATCGCCCACGTCGTCGAAGGCCTCGTCGCCTTCC
GTGACGATACGTCGGTCGGGCCGATGCTGGCCGACAGTTGGACAGTCTCGGACGATGGAAAGACCTATACGTTCAAGCTG
CGTCAGGGCGTGAAATTCCACAACGGCGCGGTGATGTCGGCGAGCGACGTTGTCTGGTCGCTGGAGCGCTGGCTCGATCC
CGCGACACAATGGCGCTGCCTGTCGGAGTTCGGCCCCAACGGCATCGCCCGGATCGAGAAGATCCTGGCGGTGGATGAGC
AGACGGTCACGGTGACGCTCGATCAGCCGACCGCGCTGTTCCTGCCGACGCTCGCGCGGCCCGACTGCGGCCAGACGGCG
ATCCTTCACCGTGACTCTGTCGGTGCGGACGGCAGATGGATCGCGCCGATCGGCACCGGTCCGTTCAAGCTCGGCGAATG
GAAGCGCGGCCAGTATGTCGATGTCATCAGGTTCGACGGCTACGTGTCGCGTAGCGATCCGCGCACCGGCCTGACCGGCG
CCAAGACGGCCGCGGTCGACCGTGTGCGCTTCAACGTCATTCCGGACAGCGCGGCGGCCAAGGCCGGTCTGCTCAGCGGC
GCGCTTGACGTCATCATGAGCCTGTCCATCCCGGACCTGGATGACCTCAAGACTCGCCCCGAGGTGCAGCTCAGCATCAC
GCCGTCGCTGAGCATGACCGGGCTCCTGTTTCAGACCCGCGATCCCGTCCTCCAGGACGCGCGCATCCGCCGCGCGATCG
CCCTCTCGCTGGACGCGCCACAGATCGTCGACGTCGTGATGGAGGGGACTGCTCGCGCCAACAATTCGGCGCTGCCGATC
GGGAGCCCCTTCCACGGCAGCGTGCAGGGGCAGGGCTATCAGCAGGATCTCGCCGAGGCCAAGAAGCTGCTCAAGGCTGC
CAATTATCGCGGTCAGCCGATCAAGCTGATCACCAACAAGCGCTACAGCTTCGTGTTCGACGCGGCCGTGCTGGCGCAGG
AAATGGCGCGCGCCGCCGGGATCAGCATCGAGCTCGAGGTGCTGGACTGGGCGGCGCAGCTCGACCGCTACAATCGCGGC
GACTATCAGGCGATGGCCTTCATCTATTCCGCCCGGCTCGATCCGTCCCTGAGCTTCGAGATGCTGATGGGGCCGAAGGC
GACCCAGCCGCGCAAGGTCTGGGACAATCCGGAGGCGCAGGAGATGCTGCGCCAGTCGATGCTGACGACCGATGCCGCCA
AGCGCCAGGCGCTGTTCGACGAGATGCACCGGCGCTTCATCGCCGACGTGCCGATGATCGTGCTGTTCAACGGGTCCGAG
CTCACGGCGCTGCGCAAGGCGGTGAAGGGCTACTCTGGCTGGCTCTATCCCCAGGCGCGGTTCTGGGGCGTGAGCCTGCA
GCCTTAA

Upstream 100 bases:

>100_bases
TCGACATGTCGGCCGCCGCAACCTCGGCGTCGAGCCGGCCGGCAGCGACGATGGTGTCGTGATGAGCGGCGGGCGATCGC
GCTGGCGACTCGCGGGCCTC

Downstream 100 bases:

>100_bases
GGCCGGAGCGTCATCATGACCGGTTACCTGCTGCGCCGCCTGGTCTCGACGATCCCGACGCTGCTGATCGTCGCCGGCGC
GGTATTCCTGCTGGTCCGCC

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MLATLLTGAVNAGAETLLRTRLNADIRSTDPGTNRDANTDGVIAHVVEGLVAFRDDTSVGPMLADSWTVSDDGKTYTFKL
RQGVKFHNGAVMSASDVVWSLERWLDPATQWRCLSEFGPNGIARIEKILAVDEQTVTVTLDQPTALFLPTLARPDCGQTA
ILHRDSVGADGRWIAPIGTGPFKLGEWKRGQYVDVIRFDGYVSRSDPRTGLTGAKTAAVDRVRFNVIPDSAAAKAGLLSG
ALDVIMSLSIPDLDDLKTRPEVQLSITPSLSMTGLLFQTRDPVLQDARIRRAIALSLDAPQIVDVVMEGTARANNSALPI
GSPFHGSVQGQGYQQDLAEAKKLLKAANYRGQPIKLITNKRYSFVFDAAVLAQEMARAAGISIELEVLDWAAQLDRYNRG
DYQAMAFIYSARLDPSLSFEMLMGPKATQPRKVWDNPEAQEMLRQSMLTTDAAKRQALFDEMHRRFIADVPMIVLFNGSE
LTALRKAVKGYSGWLYPQARFWGVSLQP

Sequences:

>Translated_508_residues
MLATLLTGAVNAGAETLLRTRLNADIRSTDPGTNRDANTDGVIAHVVEGLVAFRDDTSVGPMLADSWTVSDDGKTYTFKL
RQGVKFHNGAVMSASDVVWSLERWLDPATQWRCLSEFGPNGIARIEKILAVDEQTVTVTLDQPTALFLPTLARPDCGQTA
ILHRDSVGADGRWIAPIGTGPFKLGEWKRGQYVDVIRFDGYVSRSDPRTGLTGAKTAAVDRVRFNVIPDSAAAKAGLLSG
ALDVIMSLSIPDLDDLKTRPEVQLSITPSLSMTGLLFQTRDPVLQDARIRRAIALSLDAPQIVDVVMEGTARANNSALPI
GSPFHGSVQGQGYQQDLAEAKKLLKAANYRGQPIKLITNKRYSFVFDAAVLAQEMARAAGISIELEVLDWAAQLDRYNRG
DYQAMAFIYSARLDPSLSFEMLMGPKATQPRKVWDNPEAQEMLRQSMLTTDAAKRQALFDEMHRRFIADVPMIVLFNGSE
LTALRKAVKGYSGWLYPQARFWGVSLQP
>Mature_508_residues
MLATLLTGAVNAGAETLLRTRLNADIRSTDPGTNRDANTDGVIAHVVEGLVAFRDDTSVGPMLADSWTVSDDGKTYTFKL
RQGVKFHNGAVMSASDVVWSLERWLDPATQWRCLSEFGPNGIARIEKILAVDEQTVTVTLDQPTALFLPTLARPDCGQTA
ILHRDSVGADGRWIAPIGTGPFKLGEWKRGQYVDVIRFDGYVSRSDPRTGLTGAKTAAVDRVRFNVIPDSAAAKAGLLSG
ALDVIMSLSIPDLDDLKTRPEVQLSITPSLSMTGLLFQTRDPVLQDARIRRAIALSLDAPQIVDVVMEGTARANNSALPI
GSPFHGSVQGQGYQQDLAEAKKLLKAANYRGQPIKLITNKRYSFVFDAAVLAQEMARAAGISIELEVLDWAAQLDRYNRG
DYQAMAFIYSARLDPSLSFEMLMGPKATQPRKVWDNPEAQEMLRQSMLTTDAAKRQALFDEMHRRFIADVPMIVLFNGSE
LTALRKAVKGYSGWLYPQARFWGVSLQP

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=506, Percent_Identity=28.2608695652174, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787052, Length=513, Percent_Identity=24.3664717348928, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789966, Length=486, Percent_Identity=26.3374485596708, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1789397, Length=501, Percent_Identity=24.3512974051896, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1787495, Length=525, Percent_Identity=23.047619047619, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1787551, Length=481, Percent_Identity=23.9085239085239, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI87081878, Length=520, Percent_Identity=23.4615384615385, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1789887, Length=461, Percent_Identity=24.7288503253796, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 55728; Mature: 55728

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATLLTGAVNAGAETLLRTRLNADIRSTDPGTNRDANTDGVIAHVVEGLVAFRDDTSVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
PMLADSWTVSDDGKTYTFKLRQGVKFHNGAVMSASDVVWSLERWLDPATQWRCLSEFGPN
CEEECCEEECCCCCEEEEEECCCCEECCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHCCC
GIARIEKILAVDEQTVTVTLDQPTALFLPTLARPDCGQTAILHRDSVGADGRWIAPIGTG
HHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCC
PFKLGEWKRGQYVDVIRFDGYVSRSDPRTGLTGAKTAAVDRVRFNVIPDSAAAKAGLLSG
CCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHH
ALDVIMSLSIPDLDDLKTRPEVQLSITPSLSMTGLLFQTRDPVLQDARIRRAIALSLDAP
HHHHHHHCCCCCHHHCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHEEEEEECCCH
QIVDVVMEGTARANNSALPIGSPFHGSVQGQGYQQDLAEAKKLLKAANYRGQPIKLITNK
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
RYSFVFDAAVLAQEMARAAGISIELEVLDWAAQLDRYNRGDYQAMAFIYSARLDPSLSFE
CEEEEHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
MLMGPKATQPRKVWDNPEAQEMLRQSMLTTDAAKRQALFDEMHRRFIADVPMIVLFNGSE
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
LTALRKAVKGYSGWLYPQARFWGVSLQP
HHHHHHHHHCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MLATLLTGAVNAGAETLLRTRLNADIRSTDPGTNRDANTDGVIAHVVEGLVAFRDDTSVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
PMLADSWTVSDDGKTYTFKLRQGVKFHNGAVMSASDVVWSLERWLDPATQWRCLSEFGPN
CEEECCEEECCCCCEEEEEECCCCEECCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHCCC
GIARIEKILAVDEQTVTVTLDQPTALFLPTLARPDCGQTAILHRDSVGADGRWIAPIGTG
HHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEECCCCCCCCEEEEECCCC
PFKLGEWKRGQYVDVIRFDGYVSRSDPRTGLTGAKTAAVDRVRFNVIPDSAAAKAGLLSG
CCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCHHHHEEEEEEEECCCHHHHHHHHHHH
ALDVIMSLSIPDLDDLKTRPEVQLSITPSLSMTGLLFQTRDPVLQDARIRRAIALSLDAP
HHHHHHHCCCCCHHHCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHEEEEEECCCH
QIVDVVMEGTARANNSALPIGSPFHGSVQGQGYQQDLAEAKKLLKAANYRGQPIKLITNK
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
RYSFVFDAAVLAQEMARAAGISIELEVLDWAAQLDRYNRGDYQAMAFIYSARLDPSLSFE
CEEEEHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
MLMGPKATQPRKVWDNPEAQEMLRQSMLTTDAAKRQALFDEMHRRFIADVPMIVLFNGSE
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
LTALRKAVKGYSGWLYPQARFWGVSLQP
HHHHHHHHHCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA