Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is ilvD [H]
Identifier: 146339500
GI number: 146339500
Start: 2656715
End: 2658433
Strand: Direct
Name: ilvD [H]
Synonym: BRADO2489
Alternate gene names: 146339500
Gene position: 2656715-2658433 (Clockwise)
Preceding gene: 146339499
Following gene: 146339502
Centisome position: 35.63
GC content: 65.62
Gene sequence:
>1719_bases ATGACCGATGGCCTGCGCAAGGGACTGACCGCTTACGGCGATGCCGGATTCTCGCTGTTCCTGCGCAAGGCGTTCATCAA GGCGGCGGGCTATTCCGACGACGCGCTCGACCGTCCGATCGTCGGCATCACCAACACCTATAGCGACTACAATCCCTGCC ACGGCAACGTGCCGCAGATCCTGGAGGCCGTGAAGCGCGGCGTCATGCTGTCGGGCGCGATGCCGTTCGTGTTTCCGACG ATCTCGATCGCCGAAAGCTTTGCGCATCCGACCTCGATGTATCTGCGCAACCTGATGGCGATGGAAACCGAGGAGATGAT CCGGGCCCAGCCGATGGACGCGGTGGTCGTCATCGGCGGCTGTGACAAGACCCTGCCCGCGCAGATCATGGCCGCAGTGT CCGCCGATCTGCCGACAGTTGTTATTCCAGTCGGGCCGATGGTGGTCGGGCATCATAAGGGCGAGGTGCTCGGCGCCTGC ACCGACTGTCGACGCCTGTGGGCCAAATATCGCGCTGGTGAAATGGACGACAGCGAGATCGAAGCGGTCAACGGCCGGCT CGCGCCGTCGGTCGGCACCTGCATGGTGATGGGGACGGCCTCGACCATGGCCTGCATCACCGAGGCGCTCGGCCTTTCGC TGCCGATGAGTGCGACGATTCCCGCACCGCATGCCGAACGCTTCCGCTCGGCCGAGGCCAGCGGCCGGGTCGCCGCGGAA ATGGCTAAGGCGAAGGGGCCGAAGCCGAGCGAACTGCTGACGCCGGCCGCTTTCAAGAATGCCCAGGTGGTGCTGCAGGC CATCGGCGGCTCGACCAACGGCCTCGTGCATCTCACCGCGATCGCCGGCCGTACGCCGCACACCATCGATCTCGACGCGT TCGACCACATCGGGCGCGAGGTGCCGGTGCTGGTCGACCTCAAGCCATCCGGCGATCACTACATGGAGCATTTCCACCAT GCCGGCGGCGTGCCGAAGCTGATGAAGCAGCTCGGCGATCTCATCGATCTCGACTGCCGCTCGATCACCGGCCAGTCGCT CCGCGACATCGTTGCTGCAGCCGAGGAGGTGCCGGGCCAGGACGTCATCCGCTCGCGTGCCGACGCAATCAAACCTGAAG GTGGCCTCGCTGTGTTGCGCGGCAATCTCGCGCCGCGCGGCGCGGTCATCAAGCATTCCGCGGCGAGCCCGAAGCTGCTG CAGCACACCGGCCGCGCCGTCGTGTTCGAATCGGTCGAGGACATGACCTTGCGGGTCGACGATCCCGGCCTCGACGTTTC GGCTGACGATGTGCTGGTGCTGCGGAACGCAGGACCGAAGGGTGCGCCGGGGATGCCGGAGGCGGGCTATTTGCCAATTC CGAAAAAGCTCGCGCGCGGCGGCACCAAGGACATGGTGCGGATCTCCGATGCGCGCATGAGCGGCACGGCGTTCGGCACG ATCGTGCTGCACATCACGCCGGAATCCGCGGTCGGCGGACCGCTGGCGCTGGTCAGGACCGGGGACATGATCCGGCTCGA TGTCGCCAAGCGCCGCATCGACCTGCTCGTCGACGATGCCGAGCTCGATCGCCGGCGAGCCGCGCTGAAGCCTGCGACGA CTCCGGACTGGGCCGAGCGCGGTTATGCGCATCTGTTTCATGAAACGATCCTGCAGGCCGACGACGGCTGCGATTTCGAT TTCATGCGCCGGAAAGGGAAGGGACAAGGAAAAGGGTGA
Upstream 100 bases:
>100_bases CGACTGGGGTTGATACGATCTCGCCGTTCCGGGGCCGGCGTGCCCCGGGACGGCGCTTGCGACAGACAAGAACAAGAATA GAAGAAGAGACGGGACTGAC
Downstream 100 bases:
>100_bases GCTCAGTCCTACTTTCCTTTGCTGGTGAACCGCTTCACAGCGGCACGGAATCCGTCGGTGTGCATGCAATTGATGATCGC ATCGCGCTCGGCGCCGAGCT
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 572; Mature: 571
Protein sequence:
>572_residues MTDGLRKGLTAYGDAGFSLFLRKAFIKAAGYSDDALDRPIVGITNTYSDYNPCHGNVPQILEAVKRGVMLSGAMPFVFPT ISIAESFAHPTSMYLRNLMAMETEEMIRAQPMDAVVVIGGCDKTLPAQIMAAVSADLPTVVIPVGPMVVGHHKGEVLGAC TDCRRLWAKYRAGEMDDSEIEAVNGRLAPSVGTCMVMGTASTMACITEALGLSLPMSATIPAPHAERFRSAEASGRVAAE MAKAKGPKPSELLTPAAFKNAQVVLQAIGGSTNGLVHLTAIAGRTPHTIDLDAFDHIGREVPVLVDLKPSGDHYMEHFHH AGGVPKLMKQLGDLIDLDCRSITGQSLRDIVAAAEEVPGQDVIRSRADAIKPEGGLAVLRGNLAPRGAVIKHSAASPKLL QHTGRAVVFESVEDMTLRVDDPGLDVSADDVLVLRNAGPKGAPGMPEAGYLPIPKKLARGGTKDMVRISDARMSGTAFGT IVLHITPESAVGGPLALVRTGDMIRLDVAKRRIDLLVDDAELDRRRAALKPATTPDWAERGYAHLFHETILQADDGCDFD FMRRKGKGQGKG
Sequences:
>Translated_572_residues MTDGLRKGLTAYGDAGFSLFLRKAFIKAAGYSDDALDRPIVGITNTYSDYNPCHGNVPQILEAVKRGVMLSGAMPFVFPT ISIAESFAHPTSMYLRNLMAMETEEMIRAQPMDAVVVIGGCDKTLPAQIMAAVSADLPTVVIPVGPMVVGHHKGEVLGAC TDCRRLWAKYRAGEMDDSEIEAVNGRLAPSVGTCMVMGTASTMACITEALGLSLPMSATIPAPHAERFRSAEASGRVAAE MAKAKGPKPSELLTPAAFKNAQVVLQAIGGSTNGLVHLTAIAGRTPHTIDLDAFDHIGREVPVLVDLKPSGDHYMEHFHH AGGVPKLMKQLGDLIDLDCRSITGQSLRDIVAAAEEVPGQDVIRSRADAIKPEGGLAVLRGNLAPRGAVIKHSAASPKLL QHTGRAVVFESVEDMTLRVDDPGLDVSADDVLVLRNAGPKGAPGMPEAGYLPIPKKLARGGTKDMVRISDARMSGTAFGT IVLHITPESAVGGPLALVRTGDMIRLDVAKRRIDLLVDDAELDRRRAALKPATTPDWAERGYAHLFHETILQADDGCDFD FMRRKGKGQGKG >Mature_571_residues TDGLRKGLTAYGDAGFSLFLRKAFIKAAGYSDDALDRPIVGITNTYSDYNPCHGNVPQILEAVKRGVMLSGAMPFVFPTI SIAESFAHPTSMYLRNLMAMETEEMIRAQPMDAVVVIGGCDKTLPAQIMAAVSADLPTVVIPVGPMVVGHHKGEVLGACT DCRRLWAKYRAGEMDDSEIEAVNGRLAPSVGTCMVMGTASTMACITEALGLSLPMSATIPAPHAERFRSAEASGRVAAEM AKAKGPKPSELLTPAAFKNAQVVLQAIGGSTNGLVHLTAIAGRTPHTIDLDAFDHIGREVPVLVDLKPSGDHYMEHFHHA GGVPKLMKQLGDLIDLDCRSITGQSLRDIVAAAEEVPGQDVIRSRADAIKPEGGLAVLRGNLAPRGAVIKHSAASPKLLQ HTGRAVVFESVEDMTLRVDDPGLDVSADDVLVLRNAGPKGAPGMPEAGYLPIPKKLARGGTKDMVRISDARMSGTAFGTI VLHITPESAVGGPLALVRTGDMIRLDVAKRRIDLLVDDAELDRRRAALKPATTPDWAERGYAHLFHETILQADDGCDFDF MRRKGKGQGKG
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=572, Percent_Identity=31.2937062937063, Blast_Score=246, Evalue=3e-66, Organism=Escherichia coli, GI1786464, Length=499, Percent_Identity=31.4629258517034, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI2367371, Length=460, Percent_Identity=32.6086956521739, Blast_Score=167, Evalue=2e-42, Organism=Escherichia coli, GI1788157, Length=516, Percent_Identity=31.0077519379845, Blast_Score=166, Evalue=4e-42, Organism=Saccharomyces cerevisiae, GI6322476, Length=554, Percent_Identity=30.14440433213, Blast_Score=249, Evalue=6e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 60878; Mature: 60747
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDGLRKGLTAYGDAGFSLFLRKAFIKAAGYSDDALDRPIVGITNTYSDYNPCHGNVPQI CCCHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCCCCCHHHH LEAVKRGVMLSGAMPFVFPTISIAESFAHPTSMYLRNLMAMETEEMIRAQPMDAVVVIGG HHHHHCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC CDKTLPAQIMAAVSADLPTVVIPVGPMVVGHHKGEVLGACTDCRRLWAKYRAGEMDDSEI CCCCHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHH EAVNGRLAPSVGTCMVMGTASTMACITEALGLSLPMSATIPAPHAERFRSAEASGRVAAE HHHCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHHH MAKAKGPKPSELLTPAAFKNAQVVLQAIGGSTNGLVHLTAIAGRTPHTIDLDAFDHIGRE HHHCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEECCCCCCEEECHHHHHCCCC VPVLVDLKPSGDHYMEHFHHAGGVPKLMKQLGDLIDLDCRSITGQSLRDIVAAAEEVPGQ CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCH DVIRSRADAIKPEGGLAVLRGNLAPRGAVIKHSAASPKLLQHTGRAVVFESVEDMTLRVD HHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCCHHHHHCCCEEEEECCCCCEEEEC DPGLDVSADDVLVLRNAGPKGAPGMPEAGYLPIPKKLARGGTKDMVRISDARMSGTAFGT CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEE IVLHITPESAVGGPLALVRTGDMIRLDVAKRRIDLLVDDAELDRRRAALKPATTPDWAER EEEEECCCCCCCCCEEEEECCCEEEEHHHHHHHHEEECCHHHHHHHHHCCCCCCCCHHHH GYAHLFHETILQADDGCDFDFMRRKGKGQGKG HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCC >Mature Secondary Structure TDGLRKGLTAYGDAGFSLFLRKAFIKAAGYSDDALDRPIVGITNTYSDYNPCHGNVPQI CCHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCCCCCHHHH LEAVKRGVMLSGAMPFVFPTISIAESFAHPTSMYLRNLMAMETEEMIRAQPMDAVVVIGG HHHHHCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC CDKTLPAQIMAAVSADLPTVVIPVGPMVVGHHKGEVLGACTDCRRLWAKYRAGEMDDSEI CCCCHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHH EAVNGRLAPSVGTCMVMGTASTMACITEALGLSLPMSATIPAPHAERFRSAEASGRVAAE HHHCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHHH MAKAKGPKPSELLTPAAFKNAQVVLQAIGGSTNGLVHLTAIAGRTPHTIDLDAFDHIGRE HHHCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEECCCCCCEEECHHHHHCCCC VPVLVDLKPSGDHYMEHFHHAGGVPKLMKQLGDLIDLDCRSITGQSLRDIVAAAEEVPGQ CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCH DVIRSRADAIKPEGGLAVLRGNLAPRGAVIKHSAASPKLLQHTGRAVVFESVEDMTLRVD HHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCCHHHHHCCCEEEEECCCCCEEEEC DPGLDVSADDVLVLRNAGPKGAPGMPEAGYLPIPKKLARGGTKDMVRISDARMSGTAFGT CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEE IVLHITPESAVGGPLALVRTGDMIRLDVAKRRIDLLVDDAELDRRRAALKPATTPDWAER EEEEECCCCCCCCCEEEEECCCEEEEHHHHHHHHEEECCHHHHHHHHHCCCCCCCCHHHH GYAHLFHETILQADDGCDFDFMRRKGKGQGKG HHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA