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The map label for this gene is yhjC [C]

Identifier: 146339421

GI number: 146339421

Start: 2564743

End: 2565708

Strand: Direct

Name: yhjC [C]

Synonym: BRADO2407

Alternate gene names: 146339421

Gene position: 2564743-2565708 (Clockwise)

Preceding gene: 146339417

Following gene: 146339430

Centisome position: 34.4

GC content: 67.39

Gene sequence:

>966_bases
TTGATAATGGATACGCTGGTCAGTATTCGGGTATTCTGCCAAGTCGCCGAGCTCAAGAGCTTCGCGGCGGCGGCCGACCG
CCTGAGCCTGTCGCCGGCGATGGCGTCCAAGCACGTCATGCAGCTGGAGCAGCGGTTGTCGACGCGGCTGCTCAACCGCA
CCAGCCGGCGGGTCGGCCTGACCGAGGCGGGGCAGGTGTATTTCGACCAGGTCCGTCCGATGCTCGATCAGCTCGACGAG
GCCGAGGCCGTCGTGAGCAAGGCCACGGTGATCCCGCGCGGTACGTTGAAGGTCAGCGCGCCGGTGTGGTTCGCCAATCC
GCTGTTTGCCGGGATGCTCGCGGCCTATCACGCGCGCCATCCGGACGTGGTGCTCGACCTCGATCTCAGCGGACGGCTGG
TCAACCTTGTGGAGGAGGGGTTTGATCTCGCGCTCCGCGTCTCCGCGACGCCGGGTGACGGGCTGATCGCGCGTCCGCTG
CCGCCGGTGCTGATGCAGCTCGTGGCGTCACCGGCCTATCTGGCCGCCGCGGGGCGGCCGGCGACGCTCGCCGATCTCGA
CGGTCATGGCTTTTTGAAGTACGCGCATTATCCGGTGCGGACGATCATGGTCCCCCACGCCGACGGCGAGGTCGCGCTCG
GCTTCCGCGACGTGCTGATCAGCGGCAATGAGACGCTGCTGCACCAGGCCGCCGTCGCAGGCCTCGGCATGGCCGTGCTG
CCGCGCTGGCTGATGGCGGACGATCTCGCAGCCGGGCGGCTCGAGGCCGTGCTGCCGGAGCTGCTGACGATCAAGGCGCC
GCTCTTGGCGGTCTATCCAAGCCGCAAATATCTCTCCGCCAAGGTCCGCACCTTCATCGATTTCATCGCCGCCGATCCGC
TGATGAAGCAGGCGTCGGACGGCCCGGCGTCCGCGATCGATCCGATCGCGGTGCTGGCGAGGAAAGGGAGGAAAATGGAG
GCGTGA

Upstream 100 bases:

>100_bases
GGACATCGCGGGGTCTCCAAGAGTGAAATCGAGCCCCGATCTTGATGATTTCGTCTGGTTTGATCATTATGCTGATCGTT
GAAGCATCATTTCTTTATGG

Downstream 100 bases:

>100_bases
GGATCTTGGGGCCGAAGGTCTCTCGGCCGTCAAGCCCGGGCATGACGAGTCACTCACTTGACGGCGCGTGGGGCTTGACC
GCTCACGGCCGCACCGCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MIMDTLVSIRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYFDQVRPMLDQLDE
AEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARHPDVVLDLDLSGRLVNLVEEGFDLALRVSATPGDGLIARPL
PPVLMQLVASPAYLAAAGRPATLADLDGHGFLKYAHYPVRTIMVPHADGEVALGFRDVLISGNETLLHQAAVAGLGMAVL
PRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFIAADPLMKQASDGPASAIDPIAVLARKGRKME
A

Sequences:

>Translated_321_residues
MIMDTLVSIRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYFDQVRPMLDQLDE
AEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARHPDVVLDLDLSGRLVNLVEEGFDLALRVSATPGDGLIARPL
PPVLMQLVASPAYLAAAGRPATLADLDGHGFLKYAHYPVRTIMVPHADGEVALGFRDVLISGNETLLHQAAVAGLGMAVL
PRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFIAADPLMKQASDGPASAIDPIAVLARKGRKME
A
>Mature_321_residues
MIMDTLVSIRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGLTEAGQVYFDQVRPMLDQLDE
AEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARHPDVVLDLDLSGRLVNLVEEGFDLALRVSATPGDGLIARPL
PPVLMQLVASPAYLAAAGRPATLADLDGHGFLKYAHYPVRTIMVPHADGEVALGFRDVLISGNETLLHQAAVAGLGMAVL
PRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFIAADPLMKQASDGPASAIDPIAVLARKGRKME
A

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=34.1059602649007, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=32.280701754386, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=34.6153846153846, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=30.3754266211604, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=29.7202797202797, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=29.2096219931272, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=28.0821917808219, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=24.9158249158249, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=181, Percent_Identity=28.7292817679558, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=30, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34574; Mature: 34574

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMDTLVSIRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGQVYFDQVRPMLDQLDEAEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCHHHHHHHHHHHCCC
PDVVLDLDLSGRLVNLVEEGFDLALRVSATPGDGLIARPLPPVLMQLVASPAYLAAAGRP
CCEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHHHCCCHHEEECCCC
ATLADLDGHGFLKYAHYPVRTIMVPHADGEVALGFRDVLISGNETLLHQAAVAGLGMAVL
CEEEECCCCCEEEEECCCEEEEEEECCCCCEEECHHHEEECCCHHHHHHHHHHHCCHHHH
PRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFIAADPLMKQASD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCC
GPASAIDPIAVLARKGRKMEA
CCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIMDTLVSIRVFCQVAELKSFAAAADRLSLSPAMASKHVMQLEQRLSTRLLNRTSRRVGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGQVYFDQVRPMLDQLDEAEAVVSKATVIPRGTLKVSAPVWFANPLFAGMLAAYHARH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEECCHHHHHHHHHHHCCC
PDVVLDLDLSGRLVNLVEEGFDLALRVSATPGDGLIARPLPPVLMQLVASPAYLAAAGRP
CCEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHHHCCCHHEEECCCC
ATLADLDGHGFLKYAHYPVRTIMVPHADGEVALGFRDVLISGNETLLHQAAVAGLGMAVL
CEEEECCCCCEEEEECCCEEEEEEECCCCCEEECHHHEEECCCHHHHHHHHHHHCCHHHH
PRWLMADDLAAGRLEAVLPELLTIKAPLLAVYPSRKYLSAKVRTFIDFIAADPLMKQASD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCC
GPASAIDPIAVLARKGRKMEA
CCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]