| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is tap [C]
Identifier: 146339106
GI number: 146339106
Start: 2196047
End: 2197780
Strand: Direct
Name: tap [C]
Synonym: BRADO2060
Alternate gene names: 146339106
Gene position: 2196047-2197780 (Clockwise)
Preceding gene: 146339105
Following gene: 146339107
Centisome position: 29.45
GC content: 67.53
Gene sequence:
>1734_bases ATGTTCCGATTCCTCAACCGCTTCCGAATCTCGACCAAGCTCGTGACCGCCACGCTCGGCGGAATGATGTTCGTCGTCAT CATGATCACGAGTCAGATCGTCGGCAACGCCAGCATTGACCGCGATCTCAACCTCGCCTTCGACCAGCAGGACATCGCCA GGCTGGCGATGGACACCAAGGCCGCGGCGCGGCAGATGCAGCTTGCCGTGCGCGACATCAGACTGGCGAACTCCGACGCC GAGATCGGTGCCGCAGAGCAGCGCCTTGCCGACGGACGCCGGGCGGCCGACGAGTTCTGCGCCGAGATGACGCTCAAGCC CGCGTCGGCCGAGACCAAGGCCCGTGTCCAGGCGTTGCAGACCGCGATCGAGGCCTACGCCGGCGACGCCAAGCGCATCG TCGCGATCCGGCAGAGGATCGCCGACGACCTCGCGGCGGGCAGATCCGCGGACACTGCGGCACGTGAAGCCGAGGCGGCG GCGCTGGCGCGCAACGTCACTTTGCCGATTGCAAAGACGATCGATGAAGTGTCCGACACCATCGTGAGCTTCGCATCCTC CAAAGCGGCCGCCGACAAGCGAGCGGTCTGGGCGGTCATCTCCAAATCCGAAACAGTTTCTGTCGCAATGGGCGCCATCG CGGTTCTCGTGCTGGCCGCGACGGGCCTGATGAGCGTCTTCGCAGTGTCGCGGCCGATCGGCCGGATGGTGCAGAACATG ACCGCGCTGGCGGGCGGCGAGTTGCAGGTTTCGATCACCGGATTGGAACGCGGTGACGAGGTCGGCGACATGGCGCGGGC GACGCAGGTGTTCAAGACCAGCCTGATTGAAACGCATCGCCTGCGTGCCGAGCAGGTCGCGGCGGAAGCGCGCGCGGACG CTCAGCGCAAGCAGGACGTCGATGCCTTCACCGCGGCGTTCGAGAGCGCGATCGGTGGCATCGTCGATCGTGTCTCGTCA AACTCACTCAGCCTGGAGCAGGCGGCGTCCACGCTCGCGAACACCGCGTCGACCACGAGGGAGCTGTCGACGACGGTGGC CTCCGCCTCGGAGGAGGCGTCCGCCAGCGTCCAGTCGGTCGCGGCCGCGACCGAGGAGATGGCCGCGACCGCGGCCGAGA TCGGTCGTCAGATCGAGGGCGCATCGCGCGTTGCCCAGAGCGCGGTGGCGCAGGCGACGAGCACGGACCAGTCGATGACC AAGCTGGCCGGTGCCGCGGACAAGGTCGGCAGCATCGTCGGCATGATCACCGCGATCGCGCAGCAGACCAATCTGCTGGC GCTCAATGCCACGATCGAAGCCGCGCGCGCGGGCTCCGCCGGCCGCGGTTTTGCGATCGTGGCCTCGGAGGTGAAGGAAC TCGCCGCCCAGACGGCCGACGCGACCAAGGACATCTCCGGCTACATCGCCGAGATCCAGTCCGCGGCCTCGACGGCGGTC GGCGCGATCAAGGAGATCATGTCCACGATCGCGGGCATGTCGGAGATCACCGGCGCCATCGCCGCTGCCGCCGAGGAGCA GGGCAACGCAACCAAGGAAATCTCCCGTAACGTGCAGCAGGCTGCTGTCGGTGCGTCCGAGGTGTCATCGGGGATCGTCG AGGTGCAGTCCGGCGCCACCCACACCGGTGCGGCATCATCGCAGGTCCTGACCGCGGCGCAGTCGCTGTCCGCCGACGGC CTGCGCCTGAAGCAGGAGGTCGTGAGCTTCCTCGCCCGCGTGCGCACGGCTTGA
Upstream 100 bases:
>100_bases GTCGCGAGAAATCTCGCGTTGATGCTTGTGCTGACACAACGATCCCGGATCCGGCGAATGCGAAACCGCGCTGAGTGCAA CTCGCAAGTCTCAGCCCGCC
Downstream 100 bases:
>100_bases GCGCTCTCGAGGTGTTCGAGCAGATCGACGGCAGGCATCCACGATCTTGCGGGAACCTCTGGCTGGCCGTGCGACAAACT CAGCACGCGGCGAGCGGGCT
Product: putative methyl-accepting chemotaxis receptor/sensory transducer signal peptide
Products: NA
Alternate protein names: Methyl-accepting chemotaxis protein [H]
Number of amino acids: Translated: 577; Mature: 577
Protein sequence:
>577_residues MFRFLNRFRISTKLVTATLGGMMFVVIMITSQIVGNASIDRDLNLAFDQQDIARLAMDTKAAARQMQLAVRDIRLANSDA EIGAAEQRLADGRRAADEFCAEMTLKPASAETKARVQALQTAIEAYAGDAKRIVAIRQRIADDLAAGRSADTAAREAEAA ALARNVTLPIAKTIDEVSDTIVSFASSKAAADKRAVWAVISKSETVSVAMGAIAVLVLAATGLMSVFAVSRPIGRMVQNM TALAGGELQVSITGLERGDEVGDMARATQVFKTSLIETHRLRAEQVAAEARADAQRKQDVDAFTAAFESAIGGIVDRVSS NSLSLEQAASTLANTASTTRELSTTVASASEEASASVQSVAAATEEMAATAAEIGRQIEGASRVAQSAVAQATSTDQSMT KLAGAADKVGSIVGMITAIAQQTNLLALNATIEAARAGSAGRGFAIVASEVKELAAQTADATKDISGYIAEIQSAASTAV GAIKEIMSTIAGMSEITGAIAAAAEEQGNATKEISRNVQQAAVGASEVSSGIVEVQSGATHTGAASSQVLTAAQSLSADG LRLKQEVVSFLARVRTA
Sequences:
>Translated_577_residues MFRFLNRFRISTKLVTATLGGMMFVVIMITSQIVGNASIDRDLNLAFDQQDIARLAMDTKAAARQMQLAVRDIRLANSDA EIGAAEQRLADGRRAADEFCAEMTLKPASAETKARVQALQTAIEAYAGDAKRIVAIRQRIADDLAAGRSADTAAREAEAA ALARNVTLPIAKTIDEVSDTIVSFASSKAAADKRAVWAVISKSETVSVAMGAIAVLVLAATGLMSVFAVSRPIGRMVQNM TALAGGELQVSITGLERGDEVGDMARATQVFKTSLIETHRLRAEQVAAEARADAQRKQDVDAFTAAFESAIGGIVDRVSS NSLSLEQAASTLANTASTTRELSTTVASASEEASASVQSVAAATEEMAATAAEIGRQIEGASRVAQSAVAQATSTDQSMT KLAGAADKVGSIVGMITAIAQQTNLLALNATIEAARAGSAGRGFAIVASEVKELAAQTADATKDISGYIAEIQSAASTAV GAIKEIMSTIAGMSEITGAIAAAAEEQGNATKEISRNVQQAAVGASEVSSGIVEVQSGATHTGAASSQVLTAAQSLSADG LRLKQEVVSFLARVRTA >Mature_577_residues MFRFLNRFRISTKLVTATLGGMMFVVIMITSQIVGNASIDRDLNLAFDQQDIARLAMDTKAAARQMQLAVRDIRLANSDA EIGAAEQRLADGRRAADEFCAEMTLKPASAETKARVQALQTAIEAYAGDAKRIVAIRQRIADDLAAGRSADTAAREAEAA ALARNVTLPIAKTIDEVSDTIVSFASSKAAADKRAVWAVISKSETVSVAMGAIAVLVLAATGLMSVFAVSRPIGRMVQNM TALAGGELQVSITGLERGDEVGDMARATQVFKTSLIETHRLRAEQVAAEARADAQRKQDVDAFTAAFESAIGGIVDRVSS NSLSLEQAASTLANTASTTRELSTTVASASEEASASVQSVAAATEEMAATAAEIGRQIEGASRVAQSAVAQATSTDQSMT KLAGAADKVGSIVGMITAIAQQTNLLALNATIEAARAGSAGRGFAIVASEVKELAAQTADATKDISGYIAEIQSAASTAV GAIKEIMSTIAGMSEITGAIAAAAEEQGNATKEISRNVQQAAVGASEVSSGIVEVQSGATHTGAASSQVLTAAQSLSADG LRLKQEVVSFLARVRTA
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788194, Length=193, Percent_Identity=35.7512953367876, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1788195, Length=308, Percent_Identity=29.5454545454545, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1787690, Length=185, Percent_Identity=37.8378378378378, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI2367378, Length=364, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1789453, Length=314, Percent_Identity=26.4331210191083, Blast_Score=88, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 59519; Mature: 59519
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRFLNRFRISTKLVTATLGGMMFVVIMITSQIVGNASIDRDLNLAFDQQDIARLAMDTK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHH AAARQMQLAVRDIRLANSDAEIGAAEQRLADGRRAADEFCAEMTLKPASAETKARVQALQ HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH TAIEAYAGDAKRIVAIRQRIADDLAAGRSADTAAREAEAAALARNVTLPIAKTIDEVSDT HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IVSFASSKAAADKRAVWAVISKSETVSVAMGAIAVLVLAATGLMSVFAVSRPIGRMVQNM HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TALAGGELQVSITGLERGDEVGDMARATQVFKTSLIETHRLRAEQVAAEARADAQRKQDV HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAFTAAFESAIGGIVDRVSSNSLSLEQAASTLANTASTTRELSTTVASASEEASASVQSV HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH AAATEEMAATAAEIGRQIEGASRVAQSAVAQATSTDQSMTKLAGAADKVGSIVGMITAIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH QQTNLLALNATIEAARAGSAGRGFAIVASEVKELAAQTADATKDISGYIAEIQSAASTAV HHCCEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAIKEIMSTIAGMSEITGAIAAAAEEQGNATKEISRNVQQAAVGASEVSSGIVEVQSGAT HHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCEEECCCCC HTGAASSQVLTAAQSLSADGLRLKQEVVSFLARVRTA CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFRFLNRFRISTKLVTATLGGMMFVVIMITSQIVGNASIDRDLNLAFDQQDIARLAMDTK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHH AAARQMQLAVRDIRLANSDAEIGAAEQRLADGRRAADEFCAEMTLKPASAETKARVQALQ HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH TAIEAYAGDAKRIVAIRQRIADDLAAGRSADTAAREAEAAALARNVTLPIAKTIDEVSDT HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IVSFASSKAAADKRAVWAVISKSETVSVAMGAIAVLVLAATGLMSVFAVSRPIGRMVQNM HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TALAGGELQVSITGLERGDEVGDMARATQVFKTSLIETHRLRAEQVAAEARADAQRKQDV HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAFTAAFESAIGGIVDRVSSNSLSLEQAASTLANTASTTRELSTTVASASEEASASVQSV HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH AAATEEMAATAAEIGRQIEGASRVAQSAVAQATSTDQSMTKLAGAADKVGSIVGMITAIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH QQTNLLALNATIEAARAGSAGRGFAIVASEVKELAAQTADATKDISGYIAEIQSAASTAV HHCCEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAIKEIMSTIAGMSEITGAIAAAAEEQGNATKEISRNVQQAAVGASEVSSGIVEVQSGAT HHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCEEECCCCC HTGAASSQVLTAAQSLSADGLRLKQEVVSFLARVRTA CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]