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The map label for this gene is occR [H]

Identifier: 146338856

GI number: 146338856

Start: 1915893

End: 1916789

Strand: Reverse

Name: occR [H]

Synonym: BRADO1795

Alternate gene names: 146338856

Gene position: 1916789-1915893 (Counterclockwise)

Preceding gene: 146338863

Following gene: 146338852

Centisome position: 25.71

GC content: 70.01

Gene sequence:

>897_bases
ATGCCGCTGAATCTGCGCCAGATCGAAGTCTTCCGCGCCATCATGATCACCGGCTCGATCAGCGGCGCCGCCCGGCTTCT
ATCGGTGTCACAGCCCGCCATCAGCCGGCTGCTGGCCTACACCGAGGACGGCCTCAAGCTGAAGCTGTTCGAGCGCATCA
GCGGTCGGGTGCAGCCGACGCCGGAGGCCAAGCGGCTGTTCGCCGAGGTCGAGCACGTGCACCGCGGCGTCGCGCGCATC
AACGACCTGGCCGACGAGTTGCGCGCCGGCGGCACCGGCACCATCCGCGTTGTGGCCAGCCCGAGCGCGGGATACGGCAT
GGTGCCCGACGCATTGGCGCGGCTGCGCAGCAGCTTTCCCGATCTGCGCGTCGAGTTCGAGTCGCTGACGCTGCGCGAGA
TTGTCAATCGTGTCGGCGCCGCGCGCGCCGATCTCGCCGTGACCGTGCTGCCGGTCGACGAGCCGACGGTCGCGGTGGAG
ACGATCGCGGAAGGCGCGCTGCACGTGATCATGCCGGCCGATCATGCGCTGGCGAAGCTGCGCAGCATCCGGCCGAAGGA
CATGCTGCCCTACCCGCTGGTCGGGTTCGGCCCGCAGACGCCCTACGGTCACATCGTCACGTCAGCGTTGGCCGGCGGCC
CCGAGCCCACGACGATCGTGCGCTACACGCCCGATGCCTGCGCCATGGTCCGCGCCGGCGCCGGCCTTGCCGTGGTCGAC
GAGTTCGTGCTGCGCGGCCGCGCCTGGCCCGACCTCGCGGCACGCCCGCTCGCGCCGAAGACGCCGATGCGGGCGTATTT
GTTGACGCCGCGGTTCGAACCTTTGTCGCGAAATGCGGCGGCGCTGGCGGATATCTTGCGGCAACGAGATCGGAAGGGGA
CGCCGCCGAAGCGCTGA

Upstream 100 bases:

>100_bases
AAGCCTTCCATACCGATTTGTCCGCCGCCCATAACAGCTTGTTATGGGAGGTCGCCCACGGCTACAGTCGGCGATCATCC
GCAGCGAGACAAGAGGTCGC

Downstream 100 bases:

>100_bases
GCGCTTCCCTCTCTTGGGACTCGACCTCTCACCGTGCGAACGGTGAGTTCCCCTCCCCCTTGCGGGGAGGGGAGCCCACC
GCCATCGTGGCGCCAGCCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MPLNLRQIEVFRAIMITGSISGAARLLSVSQPAISRLLAYTEDGLKLKLFERISGRVQPTPEAKRLFAEVEHVHRGVARI
NDLADELRAGGTGTIRVVASPSAGYGMVPDALARLRSSFPDLRVEFESLTLREIVNRVGAARADLAVTVLPVDEPTVAVE
TIAEGALHVIMPADHALAKLRSIRPKDMLPYPLVGFGPQTPYGHIVTSALAGGPEPTTIVRYTPDACAMVRAGAGLAVVD
EFVLRGRAWPDLAARPLAPKTPMRAYLLTPRFEPLSRNAAALADILRQRDRKGTPPKR

Sequences:

>Translated_298_residues
MPLNLRQIEVFRAIMITGSISGAARLLSVSQPAISRLLAYTEDGLKLKLFERISGRVQPTPEAKRLFAEVEHVHRGVARI
NDLADELRAGGTGTIRVVASPSAGYGMVPDALARLRSSFPDLRVEFESLTLREIVNRVGAARADLAVTVLPVDEPTVAVE
TIAEGALHVIMPADHALAKLRSIRPKDMLPYPLVGFGPQTPYGHIVTSALAGGPEPTTIVRYTPDACAMVRAGAGLAVVD
EFVLRGRAWPDLAARPLAPKTPMRAYLLTPRFEPLSRNAAALADILRQRDRKGTPPKR
>Mature_297_residues
PLNLRQIEVFRAIMITGSISGAARLLSVSQPAISRLLAYTEDGLKLKLFERISGRVQPTPEAKRLFAEVEHVHRGVARIN
DLADELRAGGTGTIRVVASPSAGYGMVPDALARLRSSFPDLRVEFESLTLREIVNRVGAARADLAVTVLPVDEPTVAVET
IAEGALHVIMPADHALAKLRSIRPKDMLPYPLVGFGPQTPYGHIVTSALAGGPEPTTIVRYTPDACAMVRAGAGLAVVDE
FVLRGRAWPDLAARPLAPKTPMRAYLLTPRFEPLSRNAAALADILRQRDRKGTPPKR

Specific function: Positive regulatory protein for the occ operon involved in octopine catabolism and uptake. Also acts as a negative regulator of its expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=300, Percent_Identity=30.6666666666667, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=21.8430034129693, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788481, Length=164, Percent_Identity=28.0487804878049, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32237; Mature: 32106

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLNLRQIEVFRAIMITGSISGAARLLSVSQPAISRLLAYTEDGLKLKLFERISGRVQPT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCC
PEAKRLFAEVEHVHRGVARINDLADELRAGGTGTIRVVASPSAGYGMVPDALARLRSSFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC
DLRVEFESLTLREIVNRVGAARADLAVTVLPVDEPTVAVETIAEGALHVIMPADHALAKL
CCEEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCHHHHHHH
RSIRPKDMLPYPLVGFGPQTPYGHIVTSALAGGPEPTTIVRYTPDACAMVRAGAGLAVVD
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCHHHHH
EFVLRGRAWPDLAARPLAPKTPMRAYLLTPRFEPLSRNAAALADILRQRDRKGTPPKR
HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PLNLRQIEVFRAIMITGSISGAARLLSVSQPAISRLLAYTEDGLKLKLFERISGRVQPT
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCC
PEAKRLFAEVEHVHRGVARINDLADELRAGGTGTIRVVASPSAGYGMVPDALARLRSSFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC
DLRVEFESLTLREIVNRVGAARADLAVTVLPVDEPTVAVETIAEGALHVIMPADHALAKL
CCEEEHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHCCCEEEEECCHHHHHHH
RSIRPKDMLPYPLVGFGPQTPYGHIVTSALAGGPEPTTIVRYTPDACAMVRAGAGLAVVD
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCHHHHH
EFVLRGRAWPDLAARPLAPKTPMRAYLLTPRFEPLSRNAAALADILRQRDRKGTPPKR
HHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698 [H]