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The map label for this gene is dppB [H]

Identifier: 146338808

GI number: 146338808

Start: 1865280

End: 1866290

Strand: Reverse

Name: dppB [H]

Synonym: BRADO1742

Alternate gene names: 146338808

Gene position: 1866290-1865280 (Counterclockwise)

Preceding gene: 146338809

Following gene: 146338807

Centisome position: 25.03

GC content: 64.19

Gene sequence:

>1011_bases
ATGCTTCGCTTCGCTTTGACCCGGTTGAGTCTGGTGGCTCCGACCTTCATCGGTCTGACCCTGCTCGTGTTCGTGCTGAT
CCGGCTCATCCCGGGCGATCCGATCGAGACGATGGCGGGCGAGCGCGGCATCGATCCGGCGCGCCTGGCGCAGCTGCGCA
AGGAGTACGGCTTCGATCAGCCGGTCATGGTGCAATACGGGTTCTATCTGGCGCGACTGGTGCACGGCGATCTCGGGCGC
TCGATCGTCACCCACGAGCCTGTGATCTCCGAATTCCAGAGCCTGTTCCCCGCCACCGTCGAACTGTCGGTCTGCGCCAT
CCTGTTCGCGCTCTGCTTCGGGCTACCAGCCGGCATCATTGCAGCGGTGCGGCGCAACTCGATCTTCGATCACGGCGTGA
TGGGCATCTCGCTGACCGGCTATTCGATGCCGATCTTCTGGTGGGGACTGCTGCTGATCCTCTTGTTCTCGGTGCAACTC
GGATGGACGCCGGTGTCCGGCCGGATCGCCGTGCAGTATTTCGTCGAACCGGTCACCGGCTTCCTGCTCATCGATACGCT
GCTCGACGGCGATGTCGGCGCGTTCGGGTCGGCACTGTCGCATCTGGTGTTGCCCACGATCGTGCTCGGCACGGTGCCGC
TCGCGGTGATTGCCCGCATGACACGCTCGGCGATGCTGGAGGTGCTGGGCGAGGACTACATCCGCACCGCCCGCGCCAAG
GGCCTGCCGGCGTTCCGCGTGATCGCGATCCATGCCCTGCGCAATGCGCTGATCCCGGTGGTGACGGTGATCGGGCTTCA
GATCGGCGTGCTGTTCACCGGCGCCATTCTCACCGAGACCATCTTCTCCTGGCCCGGCGTCGGCAAATGGCTGATCGAGG
GCATCAACCGCCGCGACTATCCGGTGCTGCAGGGCGGCACGCTGCTGATCGGCGCGATCGTCATGATTGTCAATCTGCTG
GTCGATCTCGCCTACGGGCTGATCAATCCCCGCATCCGGTACACACGATGA

Upstream 100 bases:

>100_bases
GAGCCGCTCTTGGCGTTCCGCCGTCGCGCGGCTTCCCGGCATGGCCACTTGACGACCTCCGACTAACTTCTTCTTGCTAT
CGAGGACCACAGAGCAAGGC

Downstream 100 bases:

>100_bases
GCAGCGAGAGCCTTCAGGCCCCCAGCATGGCGACGCCGGCCGGCGAGCCGCCGTCTCCGCTCGTGGAGTTCTGGTTCGAC
TTCCGGAAGAATGCCGGCGC

Product: peptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLRFALTRLSLVAPTFIGLTLLVFVLIRLIPGDPIETMAGERGIDPARLAQLRKEYGFDQPVMVQYGFYLARLVHGDLGR
SIVTHEPVISEFQSLFPATVELSVCAILFALCFGLPAGIIAAVRRNSIFDHGVMGISLTGYSMPIFWWGLLLILLFSVQL
GWTPVSGRIAVQYFVEPVTGFLLIDTLLDGDVGAFGSALSHLVLPTIVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK
GLPAFRVIAIHALRNALIPVVTVIGLQIGVLFTGAILTETIFSWPGVGKWLIEGINRRDYPVLQGGTLLIGAIVMIVNLL
VDLAYGLINPRIRYTR

Sequences:

>Translated_336_residues
MLRFALTRLSLVAPTFIGLTLLVFVLIRLIPGDPIETMAGERGIDPARLAQLRKEYGFDQPVMVQYGFYLARLVHGDLGR
SIVTHEPVISEFQSLFPATVELSVCAILFALCFGLPAGIIAAVRRNSIFDHGVMGISLTGYSMPIFWWGLLLILLFSVQL
GWTPVSGRIAVQYFVEPVTGFLLIDTLLDGDVGAFGSALSHLVLPTIVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK
GLPAFRVIAIHALRNALIPVVTVIGLQIGVLFTGAILTETIFSWPGVGKWLIEGINRRDYPVLQGGTLLIGAIVMIVNLL
VDLAYGLINPRIRYTR
>Mature_336_residues
MLRFALTRLSLVAPTFIGLTLLVFVLIRLIPGDPIETMAGERGIDPARLAQLRKEYGFDQPVMVQYGFYLARLVHGDLGR
SIVTHEPVISEFQSLFPATVELSVCAILFALCFGLPAGIIAAVRRNSIFDHGVMGISLTGYSMPIFWWGLLLILLFSVQL
GWTPVSGRIAVQYFVEPVTGFLLIDTLLDGDVGAFGSALSHLVLPTIVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK
GLPAFRVIAIHALRNALIPVVTVIGLQIGVLFTGAILTETIFSWPGVGKWLIEGINRRDYPVLQGGTLLIGAIVMIVNLL
VDLAYGLINPRIRYTR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=61.3569321533923, Blast_Score=426, Evalue=1e-120,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=40, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1787761, Length=318, Percent_Identity=47.1698113207547, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=39.8496240601504, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=36.1194029850746, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=35.2238805970149, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788504, Length=378, Percent_Identity=24.8677248677249, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36679; Mature: 36679

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFALTRLSLVAPTFIGLTLLVFVLIRLIPGDPIETMAGERGIDPARLAQLRKEYGFDQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCC
PVMVQYGFYLARLVHGDLGRSIVTHEPVISEFQSLFPATVELSVCAILFALCFGLPAGII
CHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHH
AAVRRNSIFDHGVMGISLTGYSMPIFWWGLLLILLFSVQLGWTPVSGRIAVQYFVEPVTG
HHHHHCCCHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHH
FLLIDTLLDGDVGAFGSALSHLVLPTIVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPAFRVIAIHALRNALIPVVTVIGLQIGVLFTGAILTETIFSWPGVGKWLIEGINRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
PVLQGGTLLIGAIVMIVNLLVDLAYGLINPRIRYTR
CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLRFALTRLSLVAPTFIGLTLLVFVLIRLIPGDPIETMAGERGIDPARLAQLRKEYGFDQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCC
PVMVQYGFYLARLVHGDLGRSIVTHEPVISEFQSLFPATVELSVCAILFALCFGLPAGII
CHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHH
AAVRRNSIFDHGVMGISLTGYSMPIFWWGLLLILLFSVQLGWTPVSGRIAVQYFVEPVTG
HHHHHCCCHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHH
FLLIDTLLDGDVGAFGSALSHLVLPTIVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPAFRVIAIHALRNALIPVVTVIGLQIGVLFTGAILTETIFSWPGVGKWLIEGINRRDY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
PVLQGGTLLIGAIVMIVNLLVDLAYGLINPRIRYTR
CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]