| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is oppD [H]
Identifier: 146338658
GI number: 146338658
Start: 1701832
End: 1702806
Strand: Reverse
Name: oppD [H]
Synonym: BRADO1589
Alternate gene names: 146338658
Gene position: 1702806-1701832 (Counterclockwise)
Preceding gene: 146338659
Following gene: 146338657
Centisome position: 22.84
GC content: 68.82
Gene sequence:
>975_bases GTGGCGCCGCTGGTCAGCATCTCCGGCTTGAAGGTCGCCTTCGACGGCACACAAGTGCTGCATGGCATCGATCTCGACAT CGCCAAGGGCGAGGCCGTCGGCCTCGTCGGCGAGTCGGGATCCGGCAAGTCGGTGACCTGGCTCGCGGCGCTCGGGCTGT TGCCCGCCAAGGCGAGGGTCACGGGCTCCGCCACGCTGGATGGGCGCGAACTGATCGGCGCCGATGGCAAGGTGCTCGAC CAGGTGCGCGGCCGGCGCATCGCGATGATCTTCCAGGATCCTGCCAGCGCGCTCAATCCCGTGCTGACCATCCGGCGCCA GTTGTGTGAAAGCCTCGCGCTGCATCGCGGCCTGCGCGGCGAGGCCGCACGGGTCGAGGCGCTGCGGCTGCTGGATCTCG TTGGCATTCCCGACGCGAACAGGCGCTTGTCAGCCTATCCGCACGAATTCTCCGGTGGGCAGGTCCAGCGCATCATGATC GCGATGGCGCTTGCCGGGCAGCCTGATCTGTTGATTGCCGATGAGCCGACCACCGCGCTCGATGCGACCATCCAGGCTCA GATCCTCGATCTCCTGGCCGCCGTGCGCCTCGAATTCAACATGGCGATGGTGCTGATCAGCCACGATCTCGGCGTCGTCG CGGAGAATTGCGACCGCGTCTGCGTGATGTATGCCGGCCGCATCGTCGAGCGCGCCCCCGCCACGCGTCTGTTCGATGAT CCCTGGCATCCTTATGCACAAGGCCTGATCGGCGCGCTGCCGCCGCTCGATGGCGCGCGCAAGCGGCTGCAGGCGATACC CGGCACGGTGCCGGATCCGCGCGCGCTGCCGAGCGGCTGTGCCTTCGCGCCGCGTTGTGCCCACGTCGCCGACGGCTGTC ATGCGAGCGTGCCGCCGCTGGCGCCGATCGAGCTGGATCGCGCGGTCGCCTGCCTGCGGCCGCAGCGGCTGCCGGTGGAG CTTGCCGCCGAATGA
Upstream 100 bases:
>100_bases CAGAACGCGACCTTCACGGCGAAGCCGAAGTCGATCAAGTGGAAGGCCTCGCCGGCCTTCGCGATGGACTTCCGCAGCGG CAATTACGGAGCGTGACGCC
Downstream 100 bases:
>100_bases CGTCGCCACTCGTCGAGGTCAACGCGATCTCGCGTACCTATCGGATGCGGTCCGGCCTGTTCGGGCGTTTCACCTCCGTC CATGCCGTCGACGGCCTCAG
Product: putative oligopeptide ABC transporter ATP binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MAPLVSISGLKVAFDGTQVLHGIDLDIAKGEAVGLVGESGSGKSVTWLAALGLLPAKARVTGSATLDGRELIGADGKVLD QVRGRRIAMIFQDPASALNPVLTIRRQLCESLALHRGLRGEAARVEALRLLDLVGIPDANRRLSAYPHEFSGGQVQRIMI AMALAGQPDLLIADEPTTALDATIQAQILDLLAAVRLEFNMAMVLISHDLGVVAENCDRVCVMYAGRIVERAPATRLFDD PWHPYAQGLIGALPPLDGARKRLQAIPGTVPDPRALPSGCAFAPRCAHVADGCHASVPPLAPIELDRAVACLRPQRLPVE LAAE
Sequences:
>Translated_324_residues MAPLVSISGLKVAFDGTQVLHGIDLDIAKGEAVGLVGESGSGKSVTWLAALGLLPAKARVTGSATLDGRELIGADGKVLD QVRGRRIAMIFQDPASALNPVLTIRRQLCESLALHRGLRGEAARVEALRLLDLVGIPDANRRLSAYPHEFSGGQVQRIMI AMALAGQPDLLIADEPTTALDATIQAQILDLLAAVRLEFNMAMVLISHDLGVVAENCDRVCVMYAGRIVERAPATRLFDD PWHPYAQGLIGALPPLDGARKRLQAIPGTVPDPRALPSGCAFAPRCAHVADGCHASVPPLAPIELDRAVACLRPQRLPVE LAAE >Mature_323_residues APLVSISGLKVAFDGTQVLHGIDLDIAKGEAVGLVGESGSGKSVTWLAALGLLPAKARVTGSATLDGRELIGADGKVLDQ VRGRRIAMIFQDPASALNPVLTIRRQLCESLALHRGLRGEAARVEALRLLDLVGIPDANRRLSAYPHEFSGGQVQRIMIA MALAGQPDLLIADEPTTALDATIQAQILDLLAAVRLEFNMAMVLISHDLGVVAENCDRVCVMYAGRIVERAPATRLFDDP WHPYAQGLIGALPPLDGARKRLQAIPGTVPDPRALPSGCAFAPRCAHVADGCHASVPPLAPIELDRAVACLRPQRLPVEL AAE
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=203, Percent_Identity=28.0788177339901, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI6005701, Length=205, Percent_Identity=28.2926829268293, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI27436953, Length=207, Percent_Identity=27.536231884058, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=27.8969957081545, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=27.8969957081545, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9961250, Length=236, Percent_Identity=27.9661016949153, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI9665248, Length=230, Percent_Identity=30, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI48994883, Length=315, Percent_Identity=47.6190476190476, Blast_Score=298, Evalue=3e-82, Organism=Escherichia coli, GI1789963, Length=316, Percent_Identity=44.620253164557, Blast_Score=261, Evalue=6e-71, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=50.3846153846154, Blast_Score=242, Evalue=3e-65, Organism=Escherichia coli, GI1787759, Length=321, Percent_Identity=42.9906542056075, Blast_Score=237, Evalue=9e-64, Organism=Escherichia coli, GI145693107, Length=271, Percent_Identity=46.4944649446494, Blast_Score=218, Evalue=3e-58, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=37.5, Blast_Score=197, Evalue=1e-51, Organism=Escherichia coli, GI1787500, Length=328, Percent_Identity=38.4146341463415, Blast_Score=191, Evalue=4e-50, Organism=Escherichia coli, GI1789962, Length=287, Percent_Identity=37.2822299651568, Blast_Score=184, Evalue=5e-48, Organism=Escherichia coli, GI1787758, Length=301, Percent_Identity=38.8704318936877, Blast_Score=184, Evalue=8e-48, Organism=Escherichia coli, GI1789890, Length=254, Percent_Identity=41.3385826771654, Blast_Score=161, Evalue=5e-41, Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=33.7349397590361, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI48994997, Length=258, Percent_Identity=34.4961240310078, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI1786398, Length=275, Percent_Identity=35.2727272727273, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1789891, Length=237, Percent_Identity=35.4430379746835, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=34.8739495798319, Blast_Score=115, Evalue=6e-27, Organism=Escherichia coli, GI1787370, Length=261, Percent_Identity=29.8850574712644, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787547, Length=229, Percent_Identity=30.1310043668122, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=35.981308411215, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=33.6065573770492, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=33.0543933054393, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=35.7466063348416, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI87081791, Length=269, Percent_Identity=30.1115241635688, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789032, Length=226, Percent_Identity=33.1858407079646, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=30.2521008403361, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=34.0336134453782, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1788644, Length=255, Percent_Identity=30.9803921568627, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87081709, Length=250, Percent_Identity=28, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1790162, Length=242, Percent_Identity=26.4462809917355, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=28.515625, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=31.924882629108, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=256, Percent_Identity=30.859375, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=249, Percent_Identity=26.5060240963855, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1790544, Length=260, Percent_Identity=28.8461538461538, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786563, Length=235, Percent_Identity=31.063829787234, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=29.1479820627803, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=29.0178571428571, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=30.8035714285714, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=25.7028112449799, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=28.9592760180996, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=30.1369863013699, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=31.4285714285714, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1788450, Length=250, Percent_Identity=24.8, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786319, Length=263, Percent_Identity=26.9961977186312, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786654, Length=257, Percent_Identity=29.1828793774319, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87081782, Length=208, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787792, Length=226, Percent_Identity=29.646017699115, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790534, Length=210, Percent_Identity=30.4761904761905, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790190, Length=248, Percent_Identity=27.4193548387097, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193209708, Length=230, Percent_Identity=30.8695652173913, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193202349, Length=222, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI212646699, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510237, Length=246, Percent_Identity=24.7967479674797, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569143, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71983523, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983516, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983510, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=28.0701754385965, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=236, Percent_Identity=28.3898305084746, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551700, Length=229, Percent_Identity=29.2576419213974, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551702, Length=229, Percent_Identity=29.2576419213974, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193208177, Length=235, Percent_Identity=28.0851063829787, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=251, Percent_Identity=28.6852589641434, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI17136662, Length=231, Percent_Identity=30.3030303030303, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=232, Percent_Identity=30.6034482758621, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24653245, Length=232, Percent_Identity=30.6034482758621, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24643674, Length=219, Percent_Identity=22.3744292237443, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574533, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641565, Length=218, Percent_Identity=32.5688073394495, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582014, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24582012, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 34292; Mature: 34161
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPLVSISGLKVAFDGTQVLHGIDLDIAKGEAVGLVGESGSGKSVTWLAALGLLPAKARV CCCCEEECCEEEEECCCCEEEECCEEEECCCEEEEEECCCCCCEEHHHHHHHCCCCCEEE TGSATLDGRELIGADGKVLDQVRGRRIAMIFQDPASALNPVLTIRRQLCESLALHRGLRG CCCCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC EAARVEALRLLDLVGIPDANRRLSAYPHEFSGGQVQRIMIAMALAGQPDLLIADEPTTAL CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHH DATIQAQILDLLAAVRLEFNMAMVLISHDLGVVAENCDRVCVMYAGRIVERAPATRLFDD HHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC PWHPYAQGLIGALPPLDGARKRLQAIPGTVPDPRALPSGCAFAPRCAHVADGCHASVPPL CCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC APIELDRAVACLRPQRLPVELAAE CCCCHHHHHHHHCCCCCCEEECCC >Mature Secondary Structure APLVSISGLKVAFDGTQVLHGIDLDIAKGEAVGLVGESGSGKSVTWLAALGLLPAKARV CCCEEECCEEEEECCCCEEEECCEEEECCCEEEEEECCCCCCEEHHHHHHHCCCCCEEE TGSATLDGRELIGADGKVLDQVRGRRIAMIFQDPASALNPVLTIRRQLCESLALHRGLRG CCCCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC EAARVEALRLLDLVGIPDANRRLSAYPHEFSGGQVQRIMIAMALAGQPDLLIADEPTTAL CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHH DATIQAQILDLLAAVRLEFNMAMVLISHDLGVVAENCDRVCVMYAGRIVERAPATRLFDD HHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC PWHPYAQGLIGALPPLDGARKRLQAIPGTVPDPRALPSGCAFAPRCAHVADGCHASVPPL CCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC APIELDRAVACLRPQRLPVELAAE CCCCHHHHHHHHCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]