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The map label for this gene is ybaO [H]

Identifier: 146337875

GI number: 146337875

Start: 806121

End: 806621

Strand: Reverse

Name: ybaO [H]

Synonym: BRADO0760

Alternate gene names: 146337875

Gene position: 806621-806121 (Counterclockwise)

Preceding gene: 146337876

Following gene: 146337874

Centisome position: 10.82

GC content: 63.07

Gene sequence:

>501_bases
ATGACCGACGTCACCGCCCAGGGCCCTGAAGCCAACCGCCGGCTCGACGCTATCGACCGCAAGATCCTAATGGTCCTGCA
GGAAGATGCCTCTCTCTCGGTCGCTGAGATCGGCGACCGCGTTGGGCTGTCGTCGACGCCGTGCTGGAAGCGCATCCAGC
GGCTGGAGGCCGACGGCGTCATCCTGCGCCGGGTTGCCCTGGTCGATCAGAACAAGATCGGGCTCGGCATCTCCGTGTTC
GTCTCGGTCGAGAGTGCCGATCATTCCGAAGCCTGGCTGAAGAAGTTCGCCGAGGCGGTCAGCTCGATGCCGGAGGTGAT
GGAGTTCTACCGGATGGCGGGCGACGTCGACTACATGCTGCGCGTGGTGGTTGCGGACATGCAGAGCTACGACGTTTTCT
ACAAGAAGCTGATCAGCGCCGTGCCGCTGAAGAACGTCACCTCGCGCTTTGCCATGGAGAAGATCAAGTCGGTCACGGCC
TTGCCGGTGCCGCCGGTCTAG

Upstream 100 bases:

>100_bases
CATTCGAGGCGCCTGACGTGGCCTGAACGGCCGATCCTTGCCTTGGAACGATTTTCTCTATATGAGGGTTTCTCGACCTT
CATATGGAACAAATTTCTCC

Downstream 100 bases:

>100_bases
TCCGGCCCGCATAGTCTCGCCGCTCGTTCGAGCCCACACGGTGGGGCCGTGGCAATGCTCAGCCACACGTAGTCGGCCTT
TTGTCCTGTTTCCCCATCAT

Product: AsnC/Lrp family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTDVTAQGPEANRRLDAIDRKILMVLQEDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVILRRVALVDQNKIGLGISVF
VSVESADHSEAWLKKFAEAVSSMPEVMEFYRMAGDVDYMLRVVVADMQSYDVFYKKLISAVPLKNVTSRFAMEKIKSVTA
LPVPPV

Sequences:

>Translated_166_residues
MTDVTAQGPEANRRLDAIDRKILMVLQEDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVILRRVALVDQNKIGLGISVF
VSVESADHSEAWLKKFAEAVSSMPEVMEFYRMAGDVDYMLRVVVADMQSYDVFYKKLISAVPLKNVTSRFAMEKIKSVTA
LPVPPV
>Mature_165_residues
TDVTAQGPEANRRLDAIDRKILMVLQEDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVILRRVALVDQNKIGLGISVFV
SVESADHSEAWLKKFAEAVSSMPEVMEFYRMAGDVDYMLRVVVADMQSYDVFYKKLISAVPLKNVTSRFAMEKIKSVTAL
PVPPV

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=52.6666666666667, Blast_Score=179, Evalue=8e-47,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=35.1351351351351, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18449; Mature: 18318

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVTAQGPEANRRLDAIDRKILMVLQEDASLSVAEIGDRVGLSSTPCWKRIQRLEADGV
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCH
ILRRVALVDQNKIGLGISVFVSVESADHSEAWLKKFAEAVSSMPEVMEFYRMAGDVDYML
HHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RVVVADMQSYDVFYKKLISAVPLKNVTSRFAMEKIKSVTALPVPPV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TDVTAQGPEANRRLDAIDRKILMVLQEDASLSVAEIGDRVGLSSTPCWKRIQRLEADGV
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCH
ILRRVALVDQNKIGLGISVFVSVESADHSEAWLKKFAEAVSSMPEVMEFYRMAGDVDYML
HHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RVVVADMQSYDVFYKKLISAVPLKNVTSRFAMEKIKSVTALPVPPV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]