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The map label for this gene is oprF [H]

Identifier: 146337865

GI number: 146337865

Start: 789558

End: 790847

Strand: Reverse

Name: oprF [H]

Synonym: BRADO0750

Alternate gene names: 146337865

Gene position: 790847-789558 (Counterclockwise)

Preceding gene: 146337866

Following gene: 146337863

Centisome position: 10.61

GC content: 66.98

Gene sequence:

>1290_bases
ATGGTTCGATGGGGGAAGTTTTTGCAGATCTCGAAAGTGTTTGGCATCGCGCTGGTCACCGGCGTGGCGATGTGGTCGAT
GACGCCGCCGGCGCTGGCCGATCTCGGCTTTCCCGACACGGTGAAGTTTCCGGGGCAGATCGTGATCGATGCCCAGCAAC
AGCTGATCAAGGAGAACCTCGCCGAGGACGAGTTCGCGAGCGACGCCACGGGCACGATGACGGTGCGCCGCGGCCGGCAT
TTCCAGCGTTGGATGACCTACAAGCCCGCCGCCGGCGAGCCCGCGCCCGGCTACTACAACGGCACGGAGGAACGCATCTT
CAAGGCGATGCAGGCTCCGCTGCTCGCGGCAGGCTGGCAGCTGGTCCAGGTCAATGACAACAAGGATCAGTTCACGATGC
ATCTCGTCCGCGGCGGCACAGACGCCTGGCTCGCAGTCAAGATGGATGGGCCGCAGGCCGCCGTGAACGTCAACGTGATC
GAAAGCGGCGAGGCTGCGCCTGCGCTCACCCTGGCACCGCCGGCCGCGAAGCCGGAGAAGGTCGCCGACAAGGACGACCT
GCCCTACCTCAAGCCGTATCCGGGCTCGTCGCGCAAGGGCGAGGGGCGCGGCAATGGTCCGCTCGACGTGACCCGGCCGG
GCTCCGGCGACGAGCCGGCGCTGGTCGGCCAGGGCGTCGTCGTCCGCAGCTATCAGGGTCCGACGACGCTCTCGAAGCTG
CAATTCGTCGCCGAGTACCGCGCCGCGCTGAGCAAGGCGGGCTGGCAGGTGACCTATCCCGCGACCGACAAGGAAGCGGC
CGACGCGGCGGTGGTGATCGCGCACTACACGCGCGACGGCCGCGACATCTGGGCCAGGCTGACCTATGAGTTCGGCGCCA
ATCTCAGTGTGTCGGTTGTCGATCTCGGCGCCGAGGATCTGGCCGGCAAGCTCGACAAGGACTGCCATCTGCCGCTCTAT
GGCGTGCTGTTCGACTTCAACAAGGCGTCGTTGAAGCCGGAGTCCGAGCCGCTGCTCACCAAGGTGGCCGCGCTCGTCAC
CGCGCGTCCCGACCTCAATGCCGAGATCGAGGGTCATACCGACAATGTCGGCGGCGACGACTACAATATGAGATTGTCGG
ATGCGCGCGCCGCCAGCGTCAGGACATGGCTGACGCAGCACGGCGTCGCCGCGGCGCGGCTGACCTCGCACGGCTATGGC
AAGACCCGCCCTGTCGCCGACAACGGCACCGACCAGGGCCGCGCCCTCAACCGCCGCGTCGAGATCGTCAAGCTCGGCTG
CAGGCGGTGA

Upstream 100 bases:

>100_bases
CGGGACGGAGATGCCGGCGCTGTCTTCCATCCGGCGCTGAACATTCGCTGCCCTGCGGCGACCAAATGACACGACGCGGG
CCCGGGCCTGCATCGCAGTC

Downstream 100 bases:

>100_bases
TAGAGACAGGGGCGCGGCGCGCCGGATTGGATCGCACGCTCAACCAGCGACTCTCAACCCTCACCCTGAGGAGCCCGCCG
CAGGCGGGCGTCTCGAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MVRWGKFLQISKVFGIALVTGVAMWSMTPPALADLGFPDTVKFPGQIVIDAQQQLIKENLAEDEFASDATGTMTVRRGRH
FQRWMTYKPAAGEPAPGYYNGTEERIFKAMQAPLLAAGWQLVQVNDNKDQFTMHLVRGGTDAWLAVKMDGPQAAVNVNVI
ESGEAAPALTLAPPAAKPEKVADKDDLPYLKPYPGSSRKGEGRGNGPLDVTRPGSGDEPALVGQGVVVRSYQGPTTLSKL
QFVAEYRAALSKAGWQVTYPATDKEAADAAVVIAHYTRDGRDIWARLTYEFGANLSVSVVDLGAEDLAGKLDKDCHLPLY
GVLFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHTDNVGGDDYNMRLSDARAASVRTWLTQHGVAAARLTSHGYG
KTRPVADNGTDQGRALNRRVEIVKLGCRR

Sequences:

>Translated_429_residues
MVRWGKFLQISKVFGIALVTGVAMWSMTPPALADLGFPDTVKFPGQIVIDAQQQLIKENLAEDEFASDATGTMTVRRGRH
FQRWMTYKPAAGEPAPGYYNGTEERIFKAMQAPLLAAGWQLVQVNDNKDQFTMHLVRGGTDAWLAVKMDGPQAAVNVNVI
ESGEAAPALTLAPPAAKPEKVADKDDLPYLKPYPGSSRKGEGRGNGPLDVTRPGSGDEPALVGQGVVVRSYQGPTTLSKL
QFVAEYRAALSKAGWQVTYPATDKEAADAAVVIAHYTRDGRDIWARLTYEFGANLSVSVVDLGAEDLAGKLDKDCHLPLY
GVLFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHTDNVGGDDYNMRLSDARAASVRTWLTQHGVAAARLTSHGYG
KTRPVADNGTDQGRALNRRVEIVKLGCRR
>Mature_429_residues
MVRWGKFLQISKVFGIALVTGVAMWSMTPPALADLGFPDTVKFPGQIVIDAQQQLIKENLAEDEFASDATGTMTVRRGRH
FQRWMTYKPAAGEPAPGYYNGTEERIFKAMQAPLLAAGWQLVQVNDNKDQFTMHLVRGGTDAWLAVKMDGPQAAVNVNVI
ESGEAAPALTLAPPAAKPEKVADKDDLPYLKPYPGSSRKGEGRGNGPLDVTRPGSGDEPALVGQGVVVRSYQGPTTLSKL
QFVAEYRAALSKAGWQVTYPATDKEAADAAVVIAHYTRDGRDIWARLTYEFGANLSVSVVDLGAEDLAGKLDKDCHLPLY
GVLFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHTDNVGGDDYNMRLSDARAASVRTWLTQHGVAAARLTSHGYG
KTRPVADNGTDQGRALNRRVEIVKLGCRR

Specific function: Known to stabilize the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=45.5445544554455, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788957, Length=103, Percent_Identity=41.747572815534, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=37.2881355932203, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 46430; Mature: 46430

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRWGKFLQISKVFGIALVTGVAMWSMTPPALADLGFPDTVKFPGQIVIDAQQQLIKENL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECHHHHHHHHHC
AEDEFASDATGTMTVRRGRHFQRWMTYKPAAGEPAPGYYNGTEERIFKAMQAPLLAAGWQ
CHHHHCCCCCCEEEECCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCEE
LVQVNDNKDQFTMHLVRGGTDAWLAVKMDGPQAAVNVNVIESGEAAPALTLAPPAAKPEK
EEEECCCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCC
VADKDDLPYLKPYPGSSRKGEGRGNGPLDVTRPGSGDEPALVGQGVVVRSYQGPTTLSKL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCEEEEECCCCCHHHHH
QFVAEYRAALSKAGWQVTYPATDKEAADAAVVIAHYTRDGRDIWARLTYEFGANLSVSVV
HHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEE
DLGAEDLAGKLDKDCHLPLYGVLFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHT
ECCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCC
DNVGGDDYNMRLSDARAASVRTWLTQHGVAAARLTSHGYGKTRPVADNGTDQGRALNRRV
CCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHEE
EIVKLGCRR
EEEEECCCC
>Mature Secondary Structure
MVRWGKFLQISKVFGIALVTGVAMWSMTPPALADLGFPDTVKFPGQIVIDAQQQLIKENL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECHHHHHHHHHC
AEDEFASDATGTMTVRRGRHFQRWMTYKPAAGEPAPGYYNGTEERIFKAMQAPLLAAGWQ
CHHHHCCCCCCEEEECCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCEE
LVQVNDNKDQFTMHLVRGGTDAWLAVKMDGPQAAVNVNVIESGEAAPALTLAPPAAKPEK
EEEECCCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCC
VADKDDLPYLKPYPGSSRKGEGRGNGPLDVTRPGSGDEPALVGQGVVVRSYQGPTTLSKL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCEEEEECCCCCHHHHH
QFVAEYRAALSKAGWQVTYPATDKEAADAAVVIAHYTRDGRDIWARLTYEFGANLSVSVV
HHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEE
DLGAEDLAGKLDKDCHLPLYGVLFDFNKASLKPESEPLLTKVAALVTARPDLNAEIEGHT
ECCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCC
DNVGGDDYNMRLSDARAASVRTWLTQHGVAAARLTSHGYGKTRPVADNGTDQGRALNRRV
CCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHEE
EIVKLGCRR
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]