Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is pckA [H]
Identifier: 146337858
GI number: 146337858
Start: 780390
End: 782003
Strand: Direct
Name: pckA [H]
Synonym: BRADO0741
Alternate gene names: 146337858
Gene position: 780390-782003 (Clockwise)
Preceding gene: 146337857
Following gene: 146337861
Centisome position: 10.47
GC content: 64.56
Gene sequence:
>1614_bases GTGCAAGAGACGGGTATTCGCAACGGTGCCTTCGGTGCCGACAAGTTCGGCTTAAAAAATCTCAAGCAGTTGCATTGGAA TCTCGGCGCGCCCCAGCTCTATCAGTATTCGCTGGCGGCGGGCGAGGCCACGCTGTCTGCCGACGGAGCGCTGTGCGCGG ATACGGGCGAATTCACCGGTCGCAGCCCGAAGGACAAGTTCACCGTGCGCGATGCGTCCACCGAGAAGATGTGGTGGGCG GGCAATCAGTCGATTACGCCGGAGCAGTTCGAGGCGCTGTATCAGGACTTCATCAAGCACGCCGAAGGCAAGACGCTGTT CGCGCAGGACCTGTATGGCGGCGCCGATCCGACTTTCCGCATCAAGACCCGCGTCTTCACCGAGCTCGCCTGGCATTCGC TGTTCATTCGCACGCTTCTCATCCGCCCGGAGACAATCGAGCTCGACACCTTCGTGCCGGAGCTGACGATCATCGACATG CCGAGCTTCCGCGCCGATCCGATGCGGCACGGCGTGCGCTCGCAGAACGTGGTCGCGATCGATTTCGCCCGCAAGATCGT GCTGATCGGCGGATCGTATTACGCCGGCGAGATGAAGAAGAGCGTGTTCACCACGCTCAACTACTACCTGCCCGCGCGCG GTGTAATGCCGATGCACTGCTCGGCCAATGTCGGCCCCAAGGGCGACACCGCGATTTTCTTCGGCCTGTCCGGCACCGGC AAGACGACGCTGTCGGCCGATCCCAACCGCACGCTGATCGGTGACGACGAGCACGGCTGGGGTCCGTCCGGCGTGTTCAA CTTCGAGGGCGGCTGCTACGCCAAATGCATCAAGCTCTCGCAGGAGGCCGAGCCGCAGATCTTCGCCGCCTCGAACCGTT TTGGTGCGGTGCTGGAGAATGTGGTGCTCGACGAGGACAGCCGCGTTCCCGATTTCGACGACGGCTCCAAAACCGAGAAC ACCCGCTCGGCCTATCCGCTCGACTACATCCCGAACGCCTCGCGCACCGGACGCGCGCCGCATCCGAAGAACGTCGTGAT GCTCGCCGCCGACGCCTTCGGCGTGCTGCCGCCGATCGCAAAACTGTCGCCGGCGCAGGCGATGTATCACTTCCTGTCCG GCTACACCGCCAAGGTCGCCGGCACCGAGCGCGGCCTCGGCTCCGAGCCGCAGCCGGAGTTCTCGACCTGCTTCGGCTCG CCGTTCCTGCCGCTGGATCCCTCCGTCTACGGCAACATGCTGCGGCAGCTGATCGCCGACCACAATGTCGACTGCTGGCT GGTCAACACCGGCTGGACCGGCGGCAAATACGGCACCGGCTCGCGCATGCCGATCAAGGTGACGCGCGCGCTGTTGACCG CGGCACTCGACGGCTCGCTTCGCAACGTCGAGTTCCGCACCGACAAATATTTCGGCTTCGCGGTGCCGACGGCGCTGCCG GGCGTGCCGAGCGAGATCCTCGATCCGGTCAACACCTGGAAGGACAAGGTCGAGTTCGACAAGACCGCCCGCGCGCTCGT CGGCATGTTCCAGAAGAACTTCGCCAAGTTCGAGGCCCAGGTCGACGCCGATGTCCGCGCCGCCGCGCCCGACGTGAAGC TCGCGGCGGAGTAG
Upstream 100 bases:
>100_bases TCGCGACCGCGCTTGGGTAAGGCGATGTAAACGGTAACGGTCACCGCGCGCTGCGCCACGAATTTCGCGCGATCGCTGCG GGCTCTCAGGAGGGATTTCG
Downstream 100 bases:
>100_bases GGCTGCAAGCTCAAGGGTCAGCCGCGCTGCGGCTGCCCCTTCGTTTTCGCGCCAAAGCGCGGAGCAGCCGAAGGTCGCGC CAAACCCACCGCCGTCGTCC
Product: phosphoenolpyruvate carboxykinase
Products: NA
Alternate protein names: PEP carboxykinase; PEPCK; Phosphoenolpyruvate carboxylase [H]
Number of amino acids: Translated: 537; Mature: 537
Protein sequence:
>537_residues MQETGIRNGAFGADKFGLKNLKQLHWNLGAPQLYQYSLAAGEATLSADGALCADTGEFTGRSPKDKFTVRDASTEKMWWA GNQSITPEQFEALYQDFIKHAEGKTLFAQDLYGGADPTFRIKTRVFTELAWHSLFIRTLLIRPETIELDTFVPELTIIDM PSFRADPMRHGVRSQNVVAIDFARKIVLIGGSYYAGEMKKSVFTTLNYYLPARGVMPMHCSANVGPKGDTAIFFGLSGTG KTTLSADPNRTLIGDDEHGWGPSGVFNFEGGCYAKCIKLSQEAEPQIFAASNRFGAVLENVVLDEDSRVPDFDDGSKTEN TRSAYPLDYIPNASRTGRAPHPKNVVMLAADAFGVLPPIAKLSPAQAMYHFLSGYTAKVAGTERGLGSEPQPEFSTCFGS PFLPLDPSVYGNMLRQLIADHNVDCWLVNTGWTGGKYGTGSRMPIKVTRALLTAALDGSLRNVEFRTDKYFGFAVPTALP GVPSEILDPVNTWKDKVEFDKTARALVGMFQKNFAKFEAQVDADVRAAAPDVKLAAE
Sequences:
>Translated_537_residues MQETGIRNGAFGADKFGLKNLKQLHWNLGAPQLYQYSLAAGEATLSADGALCADTGEFTGRSPKDKFTVRDASTEKMWWA GNQSITPEQFEALYQDFIKHAEGKTLFAQDLYGGADPTFRIKTRVFTELAWHSLFIRTLLIRPETIELDTFVPELTIIDM PSFRADPMRHGVRSQNVVAIDFARKIVLIGGSYYAGEMKKSVFTTLNYYLPARGVMPMHCSANVGPKGDTAIFFGLSGTG KTTLSADPNRTLIGDDEHGWGPSGVFNFEGGCYAKCIKLSQEAEPQIFAASNRFGAVLENVVLDEDSRVPDFDDGSKTEN TRSAYPLDYIPNASRTGRAPHPKNVVMLAADAFGVLPPIAKLSPAQAMYHFLSGYTAKVAGTERGLGSEPQPEFSTCFGS PFLPLDPSVYGNMLRQLIADHNVDCWLVNTGWTGGKYGTGSRMPIKVTRALLTAALDGSLRNVEFRTDKYFGFAVPTALP GVPSEILDPVNTWKDKVEFDKTARALVGMFQKNFAKFEAQVDADVRAAAPDVKLAAE >Mature_537_residues MQETGIRNGAFGADKFGLKNLKQLHWNLGAPQLYQYSLAAGEATLSADGALCADTGEFTGRSPKDKFTVRDASTEKMWWA GNQSITPEQFEALYQDFIKHAEGKTLFAQDLYGGADPTFRIKTRVFTELAWHSLFIRTLLIRPETIELDTFVPELTIIDM PSFRADPMRHGVRSQNVVAIDFARKIVLIGGSYYAGEMKKSVFTTLNYYLPARGVMPMHCSANVGPKGDTAIFFGLSGTG KTTLSADPNRTLIGDDEHGWGPSGVFNFEGGCYAKCIKLSQEAEPQIFAASNRFGAVLENVVLDEDSRVPDFDDGSKTEN TRSAYPLDYIPNASRTGRAPHPKNVVMLAADAFGVLPPIAKLSPAQAMYHFLSGYTAKVAGTERGLGSEPQPEFSTCFGS PFLPLDPSVYGNMLRQLIADHNVDCWLVNTGWTGGKYGTGSRMPIKVTRALLTAALDGSLRNVEFRTDKYFGFAVPTALP GVPSEILDPVNTWKDKVEFDKTARALVGMFQKNFAKFEAQVDADVRAAAPDVKLAAE
Specific function: Rate-limiting gluconeogenic enzyme. [C]
COG id: COG1866
COG function: function code C; Phosphoenolpyruvate carboxykinase (ATP)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoenolpyruvate carboxykinase [ATP] family [H]
Homologues:
Organism=Escherichia coli, GI1789807, Length=539, Percent_Identity=46.3821892393321, Blast_Score=468, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6322950, Length=515, Percent_Identity=46.0194174757282, Blast_Score=447, Evalue=1e-126,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001272 - InterPro: IPR013035 - InterPro: IPR008210 - InterPro: IPR015994 [H]
Pfam domain/function: PF01293 PEPCK_ATP [H]
EC number: =4.1.1.49 [H]
Molecular weight: Translated: 58743; Mature: 58743
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS00532 PEPCK_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQETGIRNGAFGADKFGLKNLKQLHWNLGAPQLYQYSLAAGEATLSADGALCADTGEFTG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHEEEEHHCCCEEECCCCCEEECCCCCCC RSPKDKFTVRDASTEKMWWAGNQSITPEQFEALYQDFIKHAEGKTLFAQDLYGGADPTFR CCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCEE IKTRVFTELAWHSLFIRTLLIRPETIELDTFVPELTIIDMPSFRADPMRHGVRSQNVVAI EHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCHHHCCCCCCCEEEE DFARKIVLIGGSYYAGEMKKSVFTTLNYYLPARGVMPMHCSANVGPKGDTAIFFGLSGTG EECCEEEEECCCEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEEEECCCC KTTLSADPNRTLIGDDEHGWGPSGVFNFEGGCYAKCIKLSQEAEPQIFAASNRFGAVLEN CEEECCCCCCCEECCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHH VVLDEDSRVPDFDDGSKTENTRSAYPLDYIPNASRTGRAPHPKNVVMLAADAFGVLPPIA HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHCCCCCHH KLSPAQAMYHFLSGYTAKVAGTERGLGSEPQPEFSTCFGSPFLPLDPSVYGNMLRQLIAD HCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHC HNVDCWLVNTGWTGGKYGTGSRMPIKVTRALLTAALDGSLRNVEFRTDKYFGFAVPTALP CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCC GVPSEILDPVNTWKDKVEFDKTARALVGMFQKNFAKFEAQVDADVRAAAPDVKLAAE CCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECC >Mature Secondary Structure MQETGIRNGAFGADKFGLKNLKQLHWNLGAPQLYQYSLAAGEATLSADGALCADTGEFTG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHEEEEHHCCCEEECCCCCEEECCCCCCC RSPKDKFTVRDASTEKMWWAGNQSITPEQFEALYQDFIKHAEGKTLFAQDLYGGADPTFR CCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCEE IKTRVFTELAWHSLFIRTLLIRPETIELDTFVPELTIIDMPSFRADPMRHGVRSQNVVAI EHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCHHHCCCCCCCEEEE DFARKIVLIGGSYYAGEMKKSVFTTLNYYLPARGVMPMHCSANVGPKGDTAIFFGLSGTG EECCEEEEECCCEEHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEEEECCCC KTTLSADPNRTLIGDDEHGWGPSGVFNFEGGCYAKCIKLSQEAEPQIFAASNRFGAVLEN CEEECCCCCCCEECCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHH VVLDEDSRVPDFDDGSKTENTRSAYPLDYIPNASRTGRAPHPKNVVMLAADAFGVLPPIA HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHCCCCCHH KLSPAQAMYHFLSGYTAKVAGTERGLGSEPQPEFSTCFGSPFLPLDPSVYGNMLRQLIAD HCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHC HNVDCWLVNTGWTGGKYGTGSRMPIKVTRALLTAALDGSLRNVEFRTDKYFGFAVPTALP CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCC GVPSEILDPVNTWKDKVEFDKTARALVGMFQKNFAKFEAQVDADVRAAAPDVKLAAE CCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]