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The map label for this gene is yciR [C]

Identifier: 146337845

GI number: 146337845

Start: 764071

End: 766224

Strand: Direct

Name: yciR [C]

Synonym: BRADO0726

Alternate gene names: 146337845

Gene position: 764071-766224 (Clockwise)

Preceding gene: 146337840

Following gene: 146337847

Centisome position: 10.25

GC content: 67.46

Gene sequence:

>2154_bases
GTGAGGCCGAGCCCGAAGCTGGGGCGGCGCAACCTGGAGGATACGGCCGCGGCCGACCAGATCGCTGGCACCCGGGCCGA
GGCGGAGGCTGCCATCGCGGAGGCGAGGAAGGCGCATGACCGCCTGATGGAGGCGATCGACATCCTCCCCGAGGGGATCG
TCTTTCTCGATTCCGACGGCCGTTACATTCTCTGGAACAAGAAATACGCCGAGATCTACAATCGCAGCTCCGATCTGTTC
GAGTCCGGCGCGCGGCTGCAGGACACGATCCGCGTCGGCGTCGCGCGCGGCGACTATCCGGAAGCCGCGGGCCGCGAGGA
CGCGTGGATCACCGAGCGGCTGGAGAAGCTGTTCCATCCGAGCGGCCGGCACGAACAGAAGCTCTCCGACGGCCGCACCA
TCCTGATCGAGGAGCGCCTCACCGGCGACGGCGGCATCATCGGTCTGCGCGTCGACATCACTGAGCTCAAGCAGCGCGAG
GAATCGTTCCGGCTTCTGTTTGACGGCAACCCTGTCCCGATGATCGTCTGCGCGCGTGACGACGGCCGCGTGCTTGGCGT
CAACGAGGCCGCGGCCCAGCACTACGGCTACAGCCGCGCGGCGTTCGAGCAGCTCAGCATCCGCAATCTGCAGGCCTACG
AGAGCGAGACGCCCTGGGCCAGCGAGCAGTCCGGCGAGGAGCAGGCGGCGCGCACCTGGAAGCATGTCCGCGCCGACGGC
GCGCTGATCGATCTCGCAATCTATTCCCGCCACCTCGTCCACAACGATCAGCCGGCGGTGCTGCTGGCGCTGATGGACAT
TACCGAGCGCAAGCGCGCCGAGGCGCGACTGGCCTTCCTCGCCCAGCACGATGCACTGACCGGGCTGCCGAGCCGCAACC
TGCTGCGTCAGCAGATCGACGACAAGCTGATCCAGATGCGGCGCGGCTCGGAGAAGATGGCCGTGCTGGTGCTCGGCCTC
GACAATTTCAAGTCGATCAACGACACCTTGGGTCATGCTATCGGCGACCGGCTGCTGCGCGGTGTCGGCAAGCGGCTGCG
CTCGATCCTGCGCCAGGAGGACATCGTGGCGCGGCTGAACTCGGACGAGTTCGCGGTCGTGCAGGGCGGACTGGCGCGGC
CGGAAGATGCCGCGCAGCTCTGCCGCCGCCTGCTGCAGGCACTCGCCGATCCCTATCTGATCGACGGCAGCTCGGTGACG
ATCGGCGCGACGATCGGCATCGCGATGGCGCCAAATGATGGGGACGATGCCGAGAAGCTCCTGAAGAACGCCGACATGGC
GCTGTCGCGCGCCAAGACGGAGACGCGCGGCACCTTCAGCTATTTCGAGACCGGCATGGATGCGCGGGCGCAGAGCCGGC
GCAAGATCGAGATCGAGCTGCGCGATGCGATCCAGCGCGACCTGCTGCAGCCGCACTATCAGCCGCTGATCGATCTTTCG
ACCGGCCGCATCACCGGCTTCGAGGCGCTGGTGCGCTGGCCGCATCCGGAGCGCGGCATGATCCCGCCGTCGGAGTTCAT
TCCGATCGCCGAGGAGACCGGGCTGATCTCCGGGCTCGGCCGCTCGATGCTGCGCCAGGCCTGCAGCGATGCGGCGAAAT
GGCCCGACGAGGTGCGCGTGGCCGTGAACATGTCGCCGCTGCAATTCCGCGTCGGCAACGTGCTGTCGCTGGTGATGGAT
GCGCTCAAGCAGTCCGGCCTGCCGGCGAGCCGGCTCGAGCTCGAGATCACCGAGACCTTGGTGCTAGAGAAGAGCGGCCA
GGTGCTGGCGACACTGCATGCGCTGCGGGCGCTCGGCGTGCGCATCTCGATGGACGATTTCGGCACCGGCTATTCCAGCC
TGAGCTATCTGCGCAGCTTCCCGTTCGACAAGATCAAGGTCGACCAGTCCTTCATCCGCGACCTCGCCGCCAACCGCGAG
GCGCAGGCGATCGTCCGCTCGATCGTCAGCCTCGGCAAGGGCCTCGGCGTCACCATCACCGCGGAGGGCGTCGAGACCGA
GGCCGAGCTGCGCTGCCTGCGCGCCGAAGGTTGCCACGAGGCGCAGGGCTATCTGTTCAGCCGCCCGCGGCCGAACGCCG
AGATCGTCGGCCTTTTGCTGGCGCAGCGGGATGCGTCGGGTGGACCGTCATCGGGCAAGGCGATGGTGGCTTAG

Upstream 100 bases:

>100_bases
AACGCGACGCGTGAGGAGAGTGAGGCGTGTGATGCGGCCTGTGCGGCCAATAAAGCCCAAAACGCTGAAGCGCGCGCCCC
GCGCCAGTGCATCCCGTCCG

Downstream 100 bases:

>100_bases
TCACAGCTTTAGCCGCGATCCCGCCCGAAAACTTCAGCTTGTGGTTGGCTCTCTCCGCGTCGTCATGGCCGGGCTTGTCC
CGGCCATCCACGTCGAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MRPSPKLGRRNLEDTAAADQIAGTRAEAEAAIAEARKAHDRLMEAIDILPEGIVFLDSDGRYILWNKKYAEIYNRSSDLF
ESGARLQDTIRVGVARGDYPEAAGREDAWITERLEKLFHPSGRHEQKLSDGRTILIEERLTGDGGIIGLRVDITELKQRE
ESFRLLFDGNPVPMIVCARDDGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYESETPWASEQSGEEQAARTWKHVRADG
ALIDLAIYSRHLVHNDQPAVLLALMDITERKRAEARLAFLAQHDALTGLPSRNLLRQQIDDKLIQMRRGSEKMAVLVLGL
DNFKSINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLNSDEFAVVQGGLARPEDAAQLCRRLLQALADPYLIDGSSVT
IGATIGIAMAPNDGDDAEKLLKNADMALSRAKTETRGTFSYFETGMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLS
TGRITGFEALVRWPHPERGMIPPSEFIPIAEETGLISGLGRSMLRQACSDAAKWPDEVRVAVNMSPLQFRVGNVLSLVMD
ALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKIKVDQSFIRDLAANRE
AQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCHEAQGYLFSRPRPNAEIVGLLLAQRDASGGPSSGKAMVA

Sequences:

>Translated_717_residues
MRPSPKLGRRNLEDTAAADQIAGTRAEAEAAIAEARKAHDRLMEAIDILPEGIVFLDSDGRYILWNKKYAEIYNRSSDLF
ESGARLQDTIRVGVARGDYPEAAGREDAWITERLEKLFHPSGRHEQKLSDGRTILIEERLTGDGGIIGLRVDITELKQRE
ESFRLLFDGNPVPMIVCARDDGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYESETPWASEQSGEEQAARTWKHVRADG
ALIDLAIYSRHLVHNDQPAVLLALMDITERKRAEARLAFLAQHDALTGLPSRNLLRQQIDDKLIQMRRGSEKMAVLVLGL
DNFKSINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLNSDEFAVVQGGLARPEDAAQLCRRLLQALADPYLIDGSSVT
IGATIGIAMAPNDGDDAEKLLKNADMALSRAKTETRGTFSYFETGMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLS
TGRITGFEALVRWPHPERGMIPPSEFIPIAEETGLISGLGRSMLRQACSDAAKWPDEVRVAVNMSPLQFRVGNVLSLVMD
ALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKIKVDQSFIRDLAANRE
AQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCHEAQGYLFSRPRPNAEIVGLLLAQRDASGGPSSGKAMVA
>Mature_717_residues
MRPSPKLGRRNLEDTAAADQIAGTRAEAEAAIAEARKAHDRLMEAIDILPEGIVFLDSDGRYILWNKKYAEIYNRSSDLF
ESGARLQDTIRVGVARGDYPEAAGREDAWITERLEKLFHPSGRHEQKLSDGRTILIEERLTGDGGIIGLRVDITELKQRE
ESFRLLFDGNPVPMIVCARDDGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYESETPWASEQSGEEQAARTWKHVRADG
ALIDLAIYSRHLVHNDQPAVLLALMDITERKRAEARLAFLAQHDALTGLPSRNLLRQQIDDKLIQMRRGSEKMAVLVLGL
DNFKSINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLNSDEFAVVQGGLARPEDAAQLCRRLLQALADPYLIDGSSVT
IGATIGIAMAPNDGDDAEKLLKNADMALSRAKTETRGTFSYFETGMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLS
TGRITGFEALVRWPHPERGMIPPSEFIPIAEETGLISGLGRSMLRQACSDAAKWPDEVRVAVNMSPLQFRVGNVLSLVMD
ALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKIKVDQSFIRDLAANRE
AQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCHEAQGYLFSRPRPNAEIVGLLLAQRDASGGPSSGKAMVA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=454, Percent_Identity=37.2246696035242, Blast_Score=304, Evalue=1e-83,
Organism=Escherichia coli, GI87081921, Length=499, Percent_Identity=31.8637274549098, Blast_Score=256, Evalue=5e-69,
Organism=Escherichia coli, GI226510982, Length=412, Percent_Identity=27.1844660194175, Blast_Score=163, Evalue=4e-41,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=34.0336134453782, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1787055, Length=425, Percent_Identity=28.4705882352941, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=35.3413654618474, Blast_Score=143, Evalue=5e-35,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=34.4, Blast_Score=143, Evalue=5e-35,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=31.3559322033898, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=32.3651452282158, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081980, Length=221, Percent_Identity=35.7466063348416, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI1788381, Length=573, Percent_Identity=23.3856893542757, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=31.0756972111554, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI87082096, Length=199, Percent_Identity=30.6532663316583, Blast_Score=102, Evalue=9e-23,
Organism=Escherichia coli, GI87081881, Length=324, Percent_Identity=27.4691358024691, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=31.1764705882353, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=37.6543209876543, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=25.5605381165919, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=33.9285714285714, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=33.1360946745562, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1789650, Length=428, Percent_Identity=19.392523364486, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=32.0512820512821, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=27.4285714285714, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI87081974, Length=141, Percent_Identity=32.6241134751773, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 79109; Mature: 79109

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSPKLGRRNLEDTAAADQIAGTRAEAEAAIAEARKAHDRLMEAIDILPEGIVFLDSDG
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
RYILWNKKYAEIYNRSSDLFESGARLQDTIRVGVARGDYPEAAGREDAWITERLEKLFHP
CEEEECCHHHHHHCCCHHHHHCCCHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHCC
SGRHEQKLSDGRTILIEERLTGDGGIIGLRVDITELKQREESFRLLFDGNPVPMIVCARD
CCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHEEEEECCCCCEEEEEECC
DGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYESETPWASEQSGEEQAARTWKHVRADG
CCCEEECCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
ALIDLAIYSRHLVHNDQPAVLLALMDITERKRAEARLAFLAQHDALTGLPSRNLLRQQID
CEEEHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DKLIQMRRGSEKMAVLVLGLDNFKSINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLN
HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SDEFAVVQGGLARPEDAAQLCRRLLQALADPYLIDGSSVTIGATIGIAMAPNDGDDAEKL
CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCCCCHHHHHH
LKNADMALSRAKTETRGTFSYFETGMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLS
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEECC
TGRITGFEALVRWPHPERGMIPPSEFIPIAEETGLISGLGRSMLRQACSDAAKWPDEVRV
CCCEEHHHHHHCCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEE
AVNMSPLQFRVGNVLSLVMDALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGV
EEECCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEHHEEEECCCCCHHHHHHHHHHHCC
RISMDDFGTGYSSLSYLRSFPFDKIKVDQSFIRDLAANREAQAIVRSIVSLGKGLGVTIT
EEEEHHCCCCHHHHHHHHHCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEE
AEGVETEAELRCLRAEGCHEAQGYLFSRPRPNAEIVGLLLAQRDASGGPSSGKAMVA
ECCCCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCEECC
>Mature Secondary Structure
MRPSPKLGRRNLEDTAAADQIAGTRAEAEAAIAEARKAHDRLMEAIDILPEGIVFLDSDG
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
RYILWNKKYAEIYNRSSDLFESGARLQDTIRVGVARGDYPEAAGREDAWITERLEKLFHP
CEEEECCHHHHHHCCCHHHHHCCCHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHCC
SGRHEQKLSDGRTILIEERLTGDGGIIGLRVDITELKQREESFRLLFDGNPVPMIVCARD
CCCCHHHHCCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHEEEEECCCCCEEEEEECC
DGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYESETPWASEQSGEEQAARTWKHVRADG
CCCEEECCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
ALIDLAIYSRHLVHNDQPAVLLALMDITERKRAEARLAFLAQHDALTGLPSRNLLRQQID
CEEEHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DKLIQMRRGSEKMAVLVLGLDNFKSINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLN
HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SDEFAVVQGGLARPEDAAQLCRRLLQALADPYLIDGSSVTIGATIGIAMAPNDGDDAEKL
CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCCCCHHHHHH
LKNADMALSRAKTETRGTFSYFETGMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLS
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEECC
TGRITGFEALVRWPHPERGMIPPSEFIPIAEETGLISGLGRSMLRQACSDAAKWPDEVRV
CCCEEHHHHHHCCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEE
AVNMSPLQFRVGNVLSLVMDALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGV
EEECCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEHHEEEECCCCCHHHHHHHHHHHCC
RISMDDFGTGYSSLSYLRSFPFDKIKVDQSFIRDLAANREAQAIVRSIVSLGKGLGVTIT
EEEEHHCCCCHHHHHHHHHCCCCCEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEE
AEGVETEAELRCLRAEGCHEAQGYLFSRPRPNAEIVGLLLAQRDASGGPSSGKAMVA
ECCCCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]