| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ybbP [H]
Identifier: 146337544
GI number: 146337544
Start: 403372
End: 405942
Strand: Reverse
Name: ybbP [H]
Synonym: BRADO0398
Alternate gene names: 146337544
Gene position: 405942-403372 (Counterclockwise)
Preceding gene: 146337545
Following gene: 146337543
Centisome position: 5.44
GC content: 69.23
Gene sequence:
>2571_bases ATGAGCACCATGGCCGAGCCGATCCCCGGCCGCCGCGTGGCGGCGCTGCCGGCGCGTTACGCCCTTCGTGAGCTGCGCGG CGGTTTGCGCGGCTTCTATGTCTTCATCGCCTGCATCGCGCTCGGCGTGCTGGCCATCGCCGGCGTCGGCTCGGTGGCGG CGAGCCTCAATGACGGCCTCGTCCGCGAGGGCCGAACCTTGCTCGGCGGCGACGTCGCGTTCTCGCTGTTTCAACGCGAG GCCAAGCCGGAGGAGATCGCCTTCCTGCGCTCGCGCGGCCGGGTGTCACTGGCGGCGACGTTGCGGGCCATGGTCCGGGC GGGCGATTCCAAGCTGGCGCTGGTCGAGCTCAAGGCGGTCGATAATGCCTACCCGCTGCTCGGCAAGGCCGAGCTTCGGC CCGATCTGCCGATCGCCGATGTGCTCGCCGAACGCGACGGCGTGTTCGGCGCCGCCGCCGACCCGGCATTGCTGGCCCGC CTCGACATCAAGGTCGGCGACATCGTCAACATCGACACCGTGCGTTTCCAGATCCGCAGCGCGCTGCAGGCCGAACCGGA CAAGCTGTCGGGCGGAATCGGCCTCGGGCCGCGCTTCCTGATCAGCGAGGAGGGCTTGCGTGCCACGCCGCTGCTGCAGC CCGGCAGCCTGGTGCGCTGGACCTACCGGGTCCGGTTGCCTGACAACGCCACCGACGACCGTGCCGCCGCCGCCCTCATC GCCGATACGCGCGAGACCCTGCCGCAGGCCGGATGGGAGATCCGAAGCCGCAGCAACGCCTCGCCGCAGCTGGAGCGGAC CATCGGCCGCTTCACGCAATTCCTGACCCTGGTCGGCCTCGCCGCACTCCTGGTCGGCGGTGTCGGCGTTGCCAACGCCG TCAAAAGCCACGTCGACCGCCGGACCGAGGTGATCGCGGCATTCAAGGCGCTCGGCGCCACCAGCCGCGACGTGTTCGGC ATCTATCTGATCCAGGTGATGGTGCTGGCGACGATCGGTTCGATCATCGGACTCTGCGCCGGCGCCGCGCTGCCTTTCGT CATCGTCGGCCTGTTCGGCAAGATTCTGCCGTTGCCGGTGATCCCCGCCGTCCACCCCGACGAGCTGGCGCTGTCTTTCC TCTACGGCCTCCTCACCGCGCTCGCATTCGGCCTGTGGCCGCTGGGGCGGGTCCGCGACGTGCCGGTGGCGGCGCTGTTT CGCGAGGCGGTCATCGCCGAATGGCACCGGCCGCGCTGGAGCTATCTGGCGTTGATCGCGGGCACCGTCGCGCTGCTGAT CGCGGTCGTGGTCGGCTTGTCCTACGACAAGAAGATTGCCGCGGTGTTCGTGGTGGCCGCCGCGCTGGTGTTCGTGCTGT TGCGCGGCATCGCCGCCATTGTGATGGCGGTGGCGCGCGCCTTGCCGCGCAGCCGCTTCCCGATGCTGCGGCTCGCCGTC AGCAACATCTACCGGCCTGGCGCGCTGACGCCGTCGGTGGTGCTGTCGCTCGGACTGGGGCTCGCGGTGCTGGTCACGAT CACCCAGATCGACGGCAATCTGCGGCGGCAGTTCCTGGCGCAGCTGCCGGAGCAGGCCCCGTCGTTCTTCTTCGTCGACG TGCCCTCCGGCCAGGCCAGCCGCTTCCGTGACTTCCTCAGGGAGCTGGCGCCGCAGTCCACGGTCGACGACGTGCCGATG CTGCGCGGCCGGATCGTCTCCGCTCGCGGCGTGCGCGCCGAGGACCTCAAGGCGACCGCGGACACCGAATGGGTGCTGCA GAGCGACCGTGGCCTCACCTATACCGGCGAGATCCCGAAGGGATCGAAGATCGTCGAGGGCGAATGGTGGGGCGATACCT ACAGCGGCCCGCCGCTGGTCTCGATCGAGAAACGGATCGCCGACGGCCTCGGCCTCAGGCTCGGTGACGACATCGTCGTC AACGTGCTCGGGCGCGACATCACCGCGAAGATCGGCAACATGCGCACGATCGACTGGCAGGGTCTCGGCATCAATTTCGT GCTGGTGTTCTCGCCGAACGCCTTCAAGGGCGCGCCCCACACCCACGTGGCCACGTTGACCGAGTCGCGCTCCGATGCCG CCGAGGATGCGCGCGTCATCCGCAAGGTGGCCGATGCCTTCCCGATGGTGACCAGTGTGCGGGTGCGCGAGGTCATGGAG ACCGTCGGCTCCGTCGTCTCCAACCTCGCGCTCGCGATCCGCGGCGCCAGCGCGGTGACGCTGATCTCGGCCATCCTGGT CCTGGGCGGCGCGCTGGCCGCGGGCCATCGTCATCGGGTCTATGACGCGGTGATCCTGAAGACGCTGGGCGCCACACGCC TGCGGCTGCTCGGCGCCTATGCGCTCGAATATCTCATGATCGGCTTTGCGACCGCCGCGTTCGGCGTGATCGCCGGATCC GTCTCGGCATGGCTGATCGTGACCCGGCTGATGACCCTGAGCTTCGTCTGGCAGGCCGGCAGCGCCGCGCTGGTCGTGCT GGCGGCCCTGGTGGTGACCGTGGGCCTCGGCCTCGCCGGTACACTGCTGGCGCTCAACCAGAAGCCGGCCACGGTTCTCA GGAACCTTTAG
Upstream 100 bases:
>100_bases TGGTAACTCATGACAGCGGTCTCGCCCACCGCTGCGACCGCGTGGTACGACTGCGCTCCGGCCGGATCGAAGCCGACGGC GCCCACGAGCCCGCCGACGC
Downstream 100 bases:
>100_bases TGCAATTGTGCGCTCATGCCGCACGGTTAACGGGCTTTTCACGGCTCAAACGCGCGCGGAGCGACATTCAGCCGCGCGTG GAAGCTTGCGCCAAATATGC
Product: putative ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MSTMAEPIPGRRVAALPARYALRELRGGLRGFYVFIACIALGVLAIAGVGSVAASLNDGLVREGRTLLGGDVAFSLFQRE AKPEEIAFLRSRGRVSLAATLRAMVRAGDSKLALVELKAVDNAYPLLGKAELRPDLPIADVLAERDGVFGAAADPALLAR LDIKVGDIVNIDTVRFQIRSALQAEPDKLSGGIGLGPRFLISEEGLRATPLLQPGSLVRWTYRVRLPDNATDDRAAAALI ADTRETLPQAGWEIRSRSNASPQLERTIGRFTQFLTLVGLAALLVGGVGVANAVKSHVDRRTEVIAAFKALGATSRDVFG IYLIQVMVLATIGSIIGLCAGAALPFVIVGLFGKILPLPVIPAVHPDELALSFLYGLLTALAFGLWPLGRVRDVPVAALF REAVIAEWHRPRWSYLALIAGTVALLIAVVVGLSYDKKIAAVFVVAAALVFVLLRGIAAIVMAVARALPRSRFPMLRLAV SNIYRPGALTPSVVLSLGLGLAVLVTITQIDGNLRRQFLAQLPEQAPSFFFVDVPSGQASRFRDFLRELAPQSTVDDVPM LRGRIVSARGVRAEDLKATADTEWVLQSDRGLTYTGEIPKGSKIVEGEWWGDTYSGPPLVSIEKRIADGLGLRLGDDIVV NVLGRDITAKIGNMRTIDWQGLGINFVLVFSPNAFKGAPHTHVATLTESRSDAAEDARVIRKVADAFPMVTSVRVREVME TVGSVVSNLALAIRGASAVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRLRLLGAYALEYLMIGFATAAFGVIAGS VSAWLIVTRLMTLSFVWQAGSAALVVLAALVVTVGLGLAGTLLALNQKPATVLRNL
Sequences:
>Translated_856_residues MSTMAEPIPGRRVAALPARYALRELRGGLRGFYVFIACIALGVLAIAGVGSVAASLNDGLVREGRTLLGGDVAFSLFQRE AKPEEIAFLRSRGRVSLAATLRAMVRAGDSKLALVELKAVDNAYPLLGKAELRPDLPIADVLAERDGVFGAAADPALLAR LDIKVGDIVNIDTVRFQIRSALQAEPDKLSGGIGLGPRFLISEEGLRATPLLQPGSLVRWTYRVRLPDNATDDRAAAALI ADTRETLPQAGWEIRSRSNASPQLERTIGRFTQFLTLVGLAALLVGGVGVANAVKSHVDRRTEVIAAFKALGATSRDVFG IYLIQVMVLATIGSIIGLCAGAALPFVIVGLFGKILPLPVIPAVHPDELALSFLYGLLTALAFGLWPLGRVRDVPVAALF REAVIAEWHRPRWSYLALIAGTVALLIAVVVGLSYDKKIAAVFVVAAALVFVLLRGIAAIVMAVARALPRSRFPMLRLAV SNIYRPGALTPSVVLSLGLGLAVLVTITQIDGNLRRQFLAQLPEQAPSFFFVDVPSGQASRFRDFLRELAPQSTVDDVPM LRGRIVSARGVRAEDLKATADTEWVLQSDRGLTYTGEIPKGSKIVEGEWWGDTYSGPPLVSIEKRIADGLGLRLGDDIVV NVLGRDITAKIGNMRTIDWQGLGINFVLVFSPNAFKGAPHTHVATLTESRSDAAEDARVIRKVADAFPMVTSVRVREVME TVGSVVSNLALAIRGASAVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRLRLLGAYALEYLMIGFATAAFGVIAGS VSAWLIVTRLMTLSFVWQAGSAALVVLAALVVTVGLGLAGTLLALNQKPATVLRNL >Mature_855_residues STMAEPIPGRRVAALPARYALRELRGGLRGFYVFIACIALGVLAIAGVGSVAASLNDGLVREGRTLLGGDVAFSLFQREA KPEEIAFLRSRGRVSLAATLRAMVRAGDSKLALVELKAVDNAYPLLGKAELRPDLPIADVLAERDGVFGAAADPALLARL DIKVGDIVNIDTVRFQIRSALQAEPDKLSGGIGLGPRFLISEEGLRATPLLQPGSLVRWTYRVRLPDNATDDRAAAALIA DTRETLPQAGWEIRSRSNASPQLERTIGRFTQFLTLVGLAALLVGGVGVANAVKSHVDRRTEVIAAFKALGATSRDVFGI YLIQVMVLATIGSIIGLCAGAALPFVIVGLFGKILPLPVIPAVHPDELALSFLYGLLTALAFGLWPLGRVRDVPVAALFR EAVIAEWHRPRWSYLALIAGTVALLIAVVVGLSYDKKIAAVFVVAAALVFVLLRGIAAIVMAVARALPRSRFPMLRLAVS NIYRPGALTPSVVLSLGLGLAVLVTITQIDGNLRRQFLAQLPEQAPSFFFVDVPSGQASRFRDFLRELAPQSTVDDVPML RGRIVSARGVRAEDLKATADTEWVLQSDRGLTYTGEIPKGSKIVEGEWWGDTYSGPPLVSIEKRIADGLGLRLGDDIVVN VLGRDITAKIGNMRTIDWQGLGINFVLVFSPNAFKGAPHTHVATLTESRSDAAEDARVIRKVADAFPMVTSVRVREVMET VGSVVSNLALAIRGASAVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRLRLLGAYALEYLMIGFATAAFGVIAGSV SAWLIVTRLMTLSFVWQAGSAALVVLAALVVTVGLGLAGTLLALNQKPATVLRNL
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=824, Percent_Identity=25.121359223301, Blast_Score=184, Evalue=2e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 91118; Mature: 90987
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTMAEPIPGRRVAALPARYALRELRGGLRGFYVFIACIALGVLAIAGVGSVAASLNDGL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH VREGRTLLGGDVAFSLFQREAKPEEIAFLRSRGRVSLAATLRAMVRAGDSKLALVELKAV HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEC DNAYPLLGKAELRPDLPIADVLAERDGVFGAAADPALLARLDIKVGDIVNIDTVRFQIRS CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHEECCCCCCEECHHHHHHHHHH ALQAEPDKLSGGIGLGPRFLISEEGLRATPLLQPGSLVRWTYRVRLPDNATDDRAAAALI HHHCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH ADTRETLPQAGWEIRSRSNASPQLERTIGRFTQFLTLVGLAALLVGGVGVANAVKSHVDR HHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH RTEVIAAFKALGATSRDVFGIYLIQVMVLATIGSIIGLCAGAALPFVIVGLFGKILPLPV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IPAVHPDELALSFLYGLLTALAFGLWPLGRVRDVPVAALFREAVIAEWHRPRWSYLALIA CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH GTVALLIAVVVGLSYDKKIAAVFVVAAALVFVLLRGIAAIVMAVARALPRSRFPMLRLAV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH SNIYRPGALTPSVVLSLGLGLAVLVTITQIDGNLRRQFLAQLPEQAPSFFFVDVPSGQAS HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHH RFRDFLRELAPQSTVDDVPMLRGRIVSARGVRAEDLKATADTEWVLQSDRGLTYTGEIPK HHHHHHHHHCCCCCCCCCHHHHCEEECCCCCCHHHCCCCCCCHHEEECCCCCEEECCCCC GSKIVEGEWWGDTYSGPPLVSIEKRIADGLGLRLGDDIVVNVLGRDITAKIGNMRTIDWQ CCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCEEEEEEC GLGINFVLVFSPNAFKGAPHTHVATLTESRSDAAEDARVIRKVADAFPMVTSVRVREVME CCCEEEEEEECCCCCCCCCCCEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVGSVVSNLALAIRGASAVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRLRLLGAY HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ALEYLMIGFATAAFGVIAGSVSAWLIVTRLMTLSFVWQAGSAALVVLAALVVTVGLGLAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH TLLALNQKPATVLRNL HHHHCCCCCHHHHCCC >Mature Secondary Structure STMAEPIPGRRVAALPARYALRELRGGLRGFYVFIACIALGVLAIAGVGSVAASLNDGL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH VREGRTLLGGDVAFSLFQREAKPEEIAFLRSRGRVSLAATLRAMVRAGDSKLALVELKAV HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEC DNAYPLLGKAELRPDLPIADVLAERDGVFGAAADPALLARLDIKVGDIVNIDTVRFQIRS CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHEECCCCCCEECHHHHHHHHHH ALQAEPDKLSGGIGLGPRFLISEEGLRATPLLQPGSLVRWTYRVRLPDNATDDRAAAALI HHHCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHH ADTRETLPQAGWEIRSRSNASPQLERTIGRFTQFLTLVGLAALLVGGVGVANAVKSHVDR HHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH RTEVIAAFKALGATSRDVFGIYLIQVMVLATIGSIIGLCAGAALPFVIVGLFGKILPLPV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IPAVHPDELALSFLYGLLTALAFGLWPLGRVRDVPVAALFREAVIAEWHRPRWSYLALIA CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH GTVALLIAVVVGLSYDKKIAAVFVVAAALVFVLLRGIAAIVMAVARALPRSRFPMLRLAV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH SNIYRPGALTPSVVLSLGLGLAVLVTITQIDGNLRRQFLAQLPEQAPSFFFVDVPSGQAS HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCHH RFRDFLRELAPQSTVDDVPMLRGRIVSARGVRAEDLKATADTEWVLQSDRGLTYTGEIPK HHHHHHHHHCCCCCCCCCHHHHCEEECCCCCCHHHCCCCCCCHHEEECCCCCEEECCCCC GSKIVEGEWWGDTYSGPPLVSIEKRIADGLGLRLGDDIVVNVLGRDITAKIGNMRTIDWQ CCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCEEEEEEC GLGINFVLVFSPNAFKGAPHTHVATLTESRSDAAEDARVIRKVADAFPMVTSVRVREVME CCCEEEEEEECCCCCCCCCCCEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVGSVVSNLALAIRGASAVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRLRLLGAY HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ALEYLMIGFATAAFGVIAGSVSAWLIVTRLMTLSFVWQAGSAALVVLAALVVTVGLGLAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH TLLALNQKPATVLRNL HHHHCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]