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The map label for this gene is yifB [H]

Identifier: 146337388

GI number: 146337388

Start: 233191

End: 234729

Strand: Reverse

Name: yifB [H]

Synonym: BRADO0221

Alternate gene names: 146337388

Gene position: 234729-233191 (Counterclockwise)

Preceding gene: 146337390

Following gene: 146337387

Centisome position: 3.15

GC content: 70.7

Gene sequence:

>1539_bases
ATGGTTCAGCGCGTTTCCACTGTCGCGTTCGAGGGGATCGAGGCTCGCGCGGTCGACGTGCAGGTCCAGGTCGCGCCGGG
ATTGCCGGCGTTTGCGATCGTCGGGCTGCCGGACAAGGCCGTCTCCGAAGCGCGCGAGCGGGTGCGCTCGGCGCTGATCG
CTTCGGGCCTCGCGCTGCCGGCGCGGCGCATCACCGTCAATCTGGCGCCGGCCGACGTGCCCAAGGAAGGCAGCCATTAT
GATCTGCCGATCGCGCTCGGGCTGATGGCCGCGATCGGCGCGATTCCGCCGGATGCGCTCAGCGGATTCACCGTGCTTGG
CGAGCTCGGGCTCGACGGCTCGATCGCGCCGGTCGCAGGGGTCCTGCCGGCGGCAATCGGCGCCAATTCGCGTGAGGAAG
GCTTGATCTGCCCGGCCGGCTGCGGCGCCGAGGCGGCGTGGGCCAGCCCCGATCTGCAGATCATCGCAGCGAATTCGCTG
ATCCAGATCGCCAATCACTTCAAGGGCACGCAGGTGCTGTCGCGGCCGCAGCCGAAAATCCAGGAAGCGCCGGCGAGCCT
GCTCGACCTGCGCGACATCAAGGGTCAGGAGAGCGGCAAGCGCGCGCTGGAGATCGCCGCGGCAGGGGGTCACCATCTCC
TGATGATCGGGTCGCCCGGCGCGGGCAAGTCGATGCTGGCGGCGAGGCTGCCATCGATCCTGCCGCCGCTGTCGCCGGCG
GAGCTCTTGGAAGTCTCGATGATCGCATCCGTCGCCGGCGAGATCGACGGCGGCGCGCTCACCAACCGGCGGCCGTTCCG
CAGCCCGCATCACTCCGCGAGCATGGCGGCGCTGACCGGCGGCGGCCTGCGGGCGCGGCCGGGCGAGATCTCGCTGGCGC
ATCACGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGATCCGCGCGTCTTGGATTCGCTGCGCCAGCCGCTGGAGAAC
GGCGAGGTCTCGATCTCGCGCGCCAACCACCGCGTCACCTACCCTGCCCGCTTCATGCTGGTCGCGGCGATGAATCCGTG
CCGTTGCGGCAATGCGTTCGAGCCCGGCTATGCCTGCAAGCGCGGCCGCATCGACCGCTGCACGGCCGACTATCAGACCC
GCATCTCCGGCCCGCTGATGGACCGCATCGATCTGCGCATCGAGGTGCCCGCCGTCAGCGCCGCCGACCTGATCCTGCCG
CCGGCCAAGGAGGGCTCCGCCGAGGTCGCCGCCCGTGTCGCCGCCGCCCGCGACCGGCAGCGCGAACGCTACGTCAAGGC
CGGTCTGCCGCACATCAGGACCAACGCCGAGGCGCCCGCCGCCGTGCTCGACGACATCGCCAAGCTCGACGCGCCGGGCC
AGAAGCTGCTGCGCGAAGCCGCCGAAACGATGCGCCTGTCCGCCCGCGGCTATCATCGCGTGCTGCGCGTCGCGCGCACG
CTGGCCGATCTCGACCATGCTGAGGCGATCGGCCGGCTGCATCTGGCGGAGGCGCTGTCATATCGGGCGCTCGCCGAGGA
CAATCGGCACGCCGCGTGA

Upstream 100 bases:

>100_bases
AGCCGTCGTTAATGGAACGTCTCGGTGCCGGCGCTGATGTTCCTGGATTGTTCTTGCGCGCACCACTGGCTTCCGCTAGC
CTCTCGATCGGGGGGCACCC

Downstream 100 bases:

>100_bases
CCTCAATGCCGTCCGCCTCAACGCTCTGGTAACGACTTCTCTTTACGCTCCGACAACCATAAGGCCGCGTTGTCATCATC
AGGCCTGTCGTGTCGGTGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MVQRVSTVAFEGIEARAVDVQVQVAPGLPAFAIVGLPDKAVSEARERVRSALIASGLALPARRITVNLAPADVPKEGSHY
DLPIALGLMAAIGAIPPDALSGFTVLGELGLDGSIAPVAGVLPAAIGANSREEGLICPAGCGAEAAWASPDLQIIAANSL
IQIANHFKGTQVLSRPQPKIQEAPASLLDLRDIKGQESGKRALEIAAAGGHHLLMIGSPGAGKSMLAARLPSILPPLSPA
ELLEVSMIASVAGEIDGGALTNRRPFRSPHHSASMAALTGGGLRARPGEISLAHHGVLFLDELPEFDPRVLDSLRQPLEN
GEVSISRANHRVTYPARFMLVAAMNPCRCGNAFEPGYACKRGRIDRCTADYQTRISGPLMDRIDLRIEVPAVSAADLILP
PAKEGSAEVAARVAAARDRQRERYVKAGLPHIRTNAEAPAAVLDDIAKLDAPGQKLLREAAETMRLSARGYHRVLRVART
LADLDHAEAIGRLHLAEALSYRALAEDNRHAA

Sequences:

>Translated_512_residues
MVQRVSTVAFEGIEARAVDVQVQVAPGLPAFAIVGLPDKAVSEARERVRSALIASGLALPARRITVNLAPADVPKEGSHY
DLPIALGLMAAIGAIPPDALSGFTVLGELGLDGSIAPVAGVLPAAIGANSREEGLICPAGCGAEAAWASPDLQIIAANSL
IQIANHFKGTQVLSRPQPKIQEAPASLLDLRDIKGQESGKRALEIAAAGGHHLLMIGSPGAGKSMLAARLPSILPPLSPA
ELLEVSMIASVAGEIDGGALTNRRPFRSPHHSASMAALTGGGLRARPGEISLAHHGVLFLDELPEFDPRVLDSLRQPLEN
GEVSISRANHRVTYPARFMLVAAMNPCRCGNAFEPGYACKRGRIDRCTADYQTRISGPLMDRIDLRIEVPAVSAADLILP
PAKEGSAEVAARVAAARDRQRERYVKAGLPHIRTNAEAPAAVLDDIAKLDAPGQKLLREAAETMRLSARGYHRVLRVART
LADLDHAEAIGRLHLAEALSYRALAEDNRHAA
>Mature_512_residues
MVQRVSTVAFEGIEARAVDVQVQVAPGLPAFAIVGLPDKAVSEARERVRSALIASGLALPARRITVNLAPADVPKEGSHY
DLPIALGLMAAIGAIPPDALSGFTVLGELGLDGSIAPVAGVLPAAIGANSREEGLICPAGCGAEAAWASPDLQIIAANSL
IQIANHFKGTQVLSRPQPKIQEAPASLLDLRDIKGQESGKRALEIAAAGGHHLLMIGSPGAGKSMLAARLPSILPPLSPA
ELLEVSMIASVAGEIDGGALTNRRPFRSPHHSASMAALTGGGLRARPGEISLAHHGVLFLDELPEFDPRVLDSLRQPLEN
GEVSISRANHRVTYPARFMLVAAMNPCRCGNAFEPGYACKRGRIDRCTADYQTRISGPLMDRIDLRIEVPAVSAADLILP
PAKEGSAEVAARVAAARDRQRERYVKAGLPHIRTNAEAPAAVLDDIAKLDAPGQKLLREAAETMRLSARGYHRVLRVART
LADLDHAEAIGRLHLAEALSYRALAEDNRHAA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=525, Percent_Identity=43.4285714285714, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 53964; Mature: 53964

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQRVSTVAFEGIEARAVDVQVQVAPGLPAFAIVGLPDKAVSEARERVRSALIASGLALP
CCCCHHHHHHCCCEEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
ARRITVNLAPADVPKEGSHYDLPIALGLMAAIGAIPPDALSGFTVLGELGLDGSIAPVAG
CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCHHEEECCCCCCCCHHHHH
VLPAAIGANSREEGLICPAGCGAEAAWASPDLQIIAANSLIQIANHFKGTQVLSRPQPKI
HHHHHHCCCCCCCCCEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCHHHCCCCCHH
QEAPASLLDLRDIKGQESGKRALEIAAAGGHHLLMIGSPGAGKSMLAARLPSILPPLSPA
HHCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHH
ELLEVSMIASVAGEIDGGALTNRRPFRSPHHSASMAALTGGGLRARPGEISLAHHGVLFL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCEEEE
DELPEFDPRVLDSLRQPLENGEVSISRANHRVTYPARFMLVAAMNPCRCGNAFEPGYACK
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCHHEEEEEECCCCCCCCCCCCCCCCC
RGRIDRCTADYQTRISGPLMDRIDLRIEVPAVSAADLILPPAKEGSAEVAARVAAARDRQ
CCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
RERYVKAGLPHIRTNAEAPAAVLDDIAKLDAPGQKLLREAAETMRLSARGYHRVLRVART
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADLDHAEAIGRLHLAEALSYRALAEDNRHAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVQRVSTVAFEGIEARAVDVQVQVAPGLPAFAIVGLPDKAVSEARERVRSALIASGLALP
CCCCHHHHHHCCCEEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
ARRITVNLAPADVPKEGSHYDLPIALGLMAAIGAIPPDALSGFTVLGELGLDGSIAPVAG
CEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCHHEEECCCCCCCCHHHHH
VLPAAIGANSREEGLICPAGCGAEAAWASPDLQIIAANSLIQIANHFKGTQVLSRPQPKI
HHHHHHCCCCCCCCCEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCHHHCCCCCHH
QEAPASLLDLRDIKGQESGKRALEIAAAGGHHLLMIGSPGAGKSMLAARLPSILPPLSPA
HHCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHH
ELLEVSMIASVAGEIDGGALTNRRPFRSPHHSASMAALTGGGLRARPGEISLAHHGVLFL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCEEEE
DELPEFDPRVLDSLRQPLENGEVSISRANHRVTYPARFMLVAAMNPCRCGNAFEPGYACK
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCHHEEEEEECCCCCCCCCCCCCCCCC
RGRIDRCTADYQTRISGPLMDRIDLRIEVPAVSAADLILPPAKEGSAEVAARVAAARDRQ
CCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
RERYVKAGLPHIRTNAEAPAAVLDDIAKLDAPGQKLLREAAETMRLSARGYHRVLRVART
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADLDHAEAIGRLHLAEALSYRALAEDNRHAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]