Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is 146337234
Identifier: 146337234
GI number: 146337234
Start: 68882
End: 70864
Strand: Reverse
Name: 146337234
Synonym: BRADO0060
Alternate gene names: NA
Gene position: 70864-68882 (Counterclockwise)
Preceding gene: 146337235
Following gene: 146337223
Centisome position: 0.95
GC content: 66.62
Gene sequence:
>1983_bases ATGATGCTGCGTTCGAGGACTTGCATCGTCGCGCTGTGCGCGACGAGCGCGGTGTGGTGCGTCGGCGCAGCGCCGGTGCG TGCGCAATCGACGGTGTGGGACGCCACGATCTCCAATACGAACTGGTATGTGCCGACGGCCCAGTTGCTGGCCTACATGT CGCCGAAGACCGGCTTCACCAACCCGATTCCGATCGGCGATCAGACGCTGTGGACCTTGGGCACGGCGACCAACGGCTCC TTCACGGGAACCAGCGTCGCGCAGCTCAGGATCGGACCCGCGCTGCTCACCGACACCTCGACCATCCAGGGCTTCGTCAC CACCAGCGGCCAGATCACGATGCTGTTTACGCCGACGGGCGGCGGCACGGTGACGGTCGGGCTCGGCACCATGCGCCTGG TGAATGGCGTCACCAGCATGGAGATGCAGATGATCACCGGCGACACGCTGCTGGTGACGCATTGGGCCTACATGCTGCCC TATGATCCCGCGACCTTCACGCCGCCGCCATCGGCACCGGTGCCTGCCAATTCAGTGCCGCAATGGGCGTGGACCGCCGG GACGCCCTGGCGGATCGTCAGCCCGGCCTTGTTCGGCACGCAGGCGCCGGGCCGCTTCGTCATCACCAACTATCAGAATG GCTATTTCTGGGGCGCGGGCATCGCGCCCGCCGGTAGCGCAGCCGGCGGCTTCACGCTGCTCGGCTCCGTCACGCCGGAG GGCCGCGTTCTGTTCAACACGCTGTCGCGTGGCAGCCTGACCAGCCTGTACGGCACCGCCAGCGGCAGTGCGTCGGGCGC GCAGATGATCGCCTCGATGTACGATCTCGCGGGAAACATGACCGGAGATCTGGCGACGATGTCGCTGGTGCAGCCTTATG GCGACACGCTGCGTGCGGCGGGTGGTCGTGTCGGCCTCGAGGCCGCTGACGCGCTCTACCGCCTGTCGATGACATCAGCG GGCTGCAGCGGTGGGATGGCGTCGGGTTTCGCGGCGCTCGACAATCTCAGCGGACCCTCGCTCGGCAACGCCATCAAGCA GACGCTTCCGGTGCTGACCGGCGCGGCGTCGCAGGCGACCTACGTCACGCAGCGCGATTTCCGGCAGACGATGACCAACC GGCTCGACGACATGGCAAGCATGCGCATCGCGGCTGGACAACATGTCTGGATGCAGCCGCTCGGCGGCACTGCGCAGCAG TCGGCCCGCGACGGCGTGCCCGGCTACAATGCGTCCGGCGGCGGCCTGGCTTTCGGCGCCGACGCCCCGCTGTCACCAGG TGCCGTCATCGGTGGCGTCGCGGCCTATTCGCGCCAGACGATCAGCGGCAGCGACGACGCCGTTCCGAACCGTCTGACGG TGTCATCCTATCAACTCGGCCTGTACGGCGCCTATGCCGTGAGCCCCGGCCTCCTGCTCGACTATCAGCTCGATGGCGGA ACCAGCGACAATGGTGAAAGCCGCTCGCTGGGCTTCATGAGCGCGACCGCCGCGGGCAGCTATCGATCCTATGCGGGCCA TGTCGGCGTGGGTGTGAAGACCCGCATTGCGCTTCAAGACAAGCTCTCGCTCATCCCCTCGCTGCGCCTGGACTACGGCG CTGTTCGCAGCAACGCCTATCGCGAGAACGGAGCCGACGGCTTCAGTCTCAACGTCGAGACGCAGCGTTATCAGGAACTG ACGGCCACGGCCGGGCTGAAAGCCGTCTATGCGATCGCAAAACAGGTTCGCCTCAGCGGCGAGGTCGGGGTGGGCTACAA CGCGCTGAACCAGCGGCTGCAGATCGGCGCCGCCTTCTCTGGCGGTGGAGACAGCTTCACCACCAACGGCCTCGCCCTGT CGCCTTGGATCTATTCGGCGGGCCTCGGATTAATCGCTGCTCGCAGCGACCGGCTCGATCTCAGCATCCGCTACGGCGTG AGCGCGACATCGTCCGGGCTGGTCGAGCAGTCCGGACACGCGGTGCTGAAGGTCAGGCTGTGA
Upstream 100 bases:
>100_bases GCCTCGTTGCGCCACCGACAGGGCAAGGCACCGCGACCAGTGCTTCGGTTCCAAGGCTGGGCCGCGATCGCGCCGGCAGC ACAGTGACATCGTGGGGGCG
Downstream 100 bases:
>100_bases GCGCCCTGGTCTACGTGCTGGCTACTCGCCAGCCTACTCGCGGGCGAAATAGTCCGGCAGAGCCTGGTCGAGCCGGAATC TGAGCATGGAGCGCGCCATG
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Autotransporter; Autotransporter Domain-Containing Protein; Autotransporter; Serine Endopeptidase; Outer Membrane Autotransporter Barrel; Exoprotein With Autotransporter; Hemagglutinin-Related Protein; Hemagglutinin-Related Autotransporter Protein
Number of amino acids: Translated: 660; Mature: 660
Protein sequence:
>660_residues MMLRSRTCIVALCATSAVWCVGAAPVRAQSTVWDATISNTNWYVPTAQLLAYMSPKTGFTNPIPIGDQTLWTLGTATNGS FTGTSVAQLRIGPALLTDTSTIQGFVTTSGQITMLFTPTGGGTVTVGLGTMRLVNGVTSMEMQMITGDTLLVTHWAYMLP YDPATFTPPPSAPVPANSVPQWAWTAGTPWRIVSPALFGTQAPGRFVITNYQNGYFWGAGIAPAGSAAGGFTLLGSVTPE GRVLFNTLSRGSLTSLYGTASGSASGAQMIASMYDLAGNMTGDLATMSLVQPYGDTLRAAGGRVGLEAADALYRLSMTSA GCSGGMASGFAALDNLSGPSLGNAIKQTLPVLTGAASQATYVTQRDFRQTMTNRLDDMASMRIAAGQHVWMQPLGGTAQQ SARDGVPGYNASGGGLAFGADAPLSPGAVIGGVAAYSRQTISGSDDAVPNRLTVSSYQLGLYGAYAVSPGLLLDYQLDGG TSDNGESRSLGFMSATAAGSYRSYAGHVGVGVKTRIALQDKLSLIPSLRLDYGAVRSNAYRENGADGFSLNVETQRYQEL TATAGLKAVYAIAKQVRLSGEVGVGYNALNQRLQIGAAFSGGGDSFTTNGLALSPWIYSAGLGLIAARSDRLDLSIRYGV SATSSGLVEQSGHAVLKVRL
Sequences:
>Translated_660_residues MMLRSRTCIVALCATSAVWCVGAAPVRAQSTVWDATISNTNWYVPTAQLLAYMSPKTGFTNPIPIGDQTLWTLGTATNGS FTGTSVAQLRIGPALLTDTSTIQGFVTTSGQITMLFTPTGGGTVTVGLGTMRLVNGVTSMEMQMITGDTLLVTHWAYMLP YDPATFTPPPSAPVPANSVPQWAWTAGTPWRIVSPALFGTQAPGRFVITNYQNGYFWGAGIAPAGSAAGGFTLLGSVTPE GRVLFNTLSRGSLTSLYGTASGSASGAQMIASMYDLAGNMTGDLATMSLVQPYGDTLRAAGGRVGLEAADALYRLSMTSA GCSGGMASGFAALDNLSGPSLGNAIKQTLPVLTGAASQATYVTQRDFRQTMTNRLDDMASMRIAAGQHVWMQPLGGTAQQ SARDGVPGYNASGGGLAFGADAPLSPGAVIGGVAAYSRQTISGSDDAVPNRLTVSSYQLGLYGAYAVSPGLLLDYQLDGG TSDNGESRSLGFMSATAAGSYRSYAGHVGVGVKTRIALQDKLSLIPSLRLDYGAVRSNAYRENGADGFSLNVETQRYQEL TATAGLKAVYAIAKQVRLSGEVGVGYNALNQRLQIGAAFSGGGDSFTTNGLALSPWIYSAGLGLIAARSDRLDLSIRYGV SATSSGLVEQSGHAVLKVRL >Mature_660_residues MMLRSRTCIVALCATSAVWCVGAAPVRAQSTVWDATISNTNWYVPTAQLLAYMSPKTGFTNPIPIGDQTLWTLGTATNGS FTGTSVAQLRIGPALLTDTSTIQGFVTTSGQITMLFTPTGGGTVTVGLGTMRLVNGVTSMEMQMITGDTLLVTHWAYMLP YDPATFTPPPSAPVPANSVPQWAWTAGTPWRIVSPALFGTQAPGRFVITNYQNGYFWGAGIAPAGSAAGGFTLLGSVTPE GRVLFNTLSRGSLTSLYGTASGSASGAQMIASMYDLAGNMTGDLATMSLVQPYGDTLRAAGGRVGLEAADALYRLSMTSA GCSGGMASGFAALDNLSGPSLGNAIKQTLPVLTGAASQATYVTQRDFRQTMTNRLDDMASMRIAAGQHVWMQPLGGTAQQ SARDGVPGYNASGGGLAFGADAPLSPGAVIGGVAAYSRQTISGSDDAVPNRLTVSSYQLGLYGAYAVSPGLLLDYQLDGG TSDNGESRSLGFMSATAAGSYRSYAGHVGVGVKTRIALQDKLSLIPSLRLDYGAVRSNAYRENGADGFSLNVETQRYQEL TATAGLKAVYAIAKQVRLSGEVGVGYNALNQRLQIGAAFSGGGDSFTTNGLALSPWIYSAGLGLIAARSDRLDLSIRYGV SATSSGLVEQSGHAVLKVRL
Specific function: Unknown
COG id: COG4625
COG function: function code S; Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68332; Mature: 68332
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLRSRTCIVALCATSAVWCVGAAPVRAQSTVWDATISNTNWYVPTAQLLAYMSPKTGFT CCCCCCCEEEEEECCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHHHHCCCCCCCC NPIPIGDQTLWTLGTATNGSFTGTSVAQLRIGPALLTDTSTIQGFVTTSGQITMLFTPTG CCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCEEEECCCCEEEEEECCCEEEEEEECCC GGTVTVGLGTMRLVNGVTSMEMQMITGDTLLVTHWAYMLPYDPATFTPPPSAPVPANSVP CCEEEEECCHHHHHCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC QWAWTAGTPWRIVSPALFGTQAPGRFVITNYQNGYFWGAGIAPAGSAAGGFTLLGSVTPE CCEECCCCCCEEECHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCC GRVLFNTLSRGSLTSLYGTASGSASGAQMIASMYDLAGNMTGDLATMSLVQPYGDTLRAA CEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHC GGRVGLEAADALYRLSMTSAGCSGGMASGFAALDNLSGPSLGNAIKQTLPVLTGAASQAT CCCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCE YVTQRDFRQTMTNRLDDMASMRIAAGQHVWMQPLGGTAQQSARDGVPGYNASGGGLAFGA EHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCEEECC DAPLSPGAVIGGVAAYSRQTISGSDDAVPNRLTVSSYQLGLYGAYAVSPGLLLDYQLDGG CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECEEEEEECCCCEEEEEEECCC TSDNGESRSLGFMSATAAGSYRSYAGHVGVGVKTRIALQDKLSLIPSLRLDYGAVRSNAY CCCCCCCCEEEEEEECCCCCCHHCCCEECCCEEEEEEEHHHHHHCCCCCCCHHHHHCCCH RENGADGFSLNVETQRYQELTATAGLKAVYAIAKQVRLSGEVGVGYNALNQRLQIGAAFS HCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEEEEEEC GGGDSFTTNGLALSPWIYSAGLGLIAARSDRLDLSIRYGVSATSSGLVEQSGHAVLKVRL CCCCCEECCCEEECCHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCEECCCCEEEEEEC >Mature Secondary Structure MMLRSRTCIVALCATSAVWCVGAAPVRAQSTVWDATISNTNWYVPTAQLLAYMSPKTGFT CCCCCCCEEEEEECCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHHHHCCCCCCCC NPIPIGDQTLWTLGTATNGSFTGTSVAQLRIGPALLTDTSTIQGFVTTSGQITMLFTPTG CCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCEEEECCCCEEEEEECCCEEEEEEECCC GGTVTVGLGTMRLVNGVTSMEMQMITGDTLLVTHWAYMLPYDPATFTPPPSAPVPANSVP CCEEEEECCHHHHHCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC QWAWTAGTPWRIVSPALFGTQAPGRFVITNYQNGYFWGAGIAPAGSAAGGFTLLGSVTPE CCEECCCCCCEEECHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCC GRVLFNTLSRGSLTSLYGTASGSASGAQMIASMYDLAGNMTGDLATMSLVQPYGDTLRAA CEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHC GGRVGLEAADALYRLSMTSAGCSGGMASGFAALDNLSGPSLGNAIKQTLPVLTGAASQAT CCCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCE YVTQRDFRQTMTNRLDDMASMRIAAGQHVWMQPLGGTAQQSARDGVPGYNASGGGLAFGA EHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCEEECC DAPLSPGAVIGGVAAYSRQTISGSDDAVPNRLTVSSYQLGLYGAYAVSPGLLLDYQLDGG CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECEEEEEECCCCEEEEEEECCC TSDNGESRSLGFMSATAAGSYRSYAGHVGVGVKTRIALQDKLSLIPSLRLDYGAVRSNAY CCCCCCCCEEEEEEECCCCCCHHCCCEECCCEEEEEEEHHHHHHCCCCCCCHHHHHCCCH RENGADGFSLNVETQRYQELTATAGLKAVYAIAKQVRLSGEVGVGYNALNQRLQIGAAFS HCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEEEEEEC GGGDSFTTNGLALSPWIYSAGLGLIAARSDRLDLSIRYGVSATSSGLVEQSGHAVLKVRL CCCCCEECCCEEECCHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA