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The map label for this gene is hypD [H]

Identifier: 146301651

GI number: 146301651

Start: 4658967

End: 4660043

Strand: Direct

Name: hypD [H]

Synonym: Fjoh_3912

Alternate gene names: 146301651

Gene position: 4658967-4660043 (Clockwise)

Preceding gene: 146301650

Following gene: 146301652

Centisome position: 76.42

GC content: 37.98

Gene sequence:

>1077_bases
ATGAAATACCTGTCTGAATATCGAAATCCGGAACTGGTTAAACACTACATAAGTGAAATCCATAAAATAACCACAAAACC
ATGGAATATCATGGAAATTTGCGGTGGTCAGACGCATTCATTAGTCAAAAACGGTCTGCTGGATTTATTGCCAAAAAACA
TTAGGATGATACACGGGCCGGGTTGTCCGGTTTGTGTTACGCCTGTTTCGTTAATCAATAAAGCAATTGAATTAATGAAA
CAAGGTGTCGTTCTGTGTTCTTTTGGAGATATGATTCGGGTTCCCGGTTCATCAAAAAGTCTATTGCAGGCCAAAGCTGA
AGGCGGTGATTTACGCATTTTATATTCTCCTTTAGAAGCTGTAAATATTGCGGCTAAAAATCTGGATAAGGAAATTGTAT
TTTTTGCTGTTGGTTTTGAAACTACTGCGCCCAGCAATGCGCTGGCCGTTCTTCATGCCCAAAAACTGGGTTTAACCAAT
TTTAGTTTATTGGTTTCTCATGTTTTAGTTCCGCCTGCAATGGAAGCTATTTTATCAGATAAATTCTGCACCATAAATGC
TTTTTTAGGTGCGGGGCATGTCTGTACAATTGTAGGTCTGGAAGAATATTATCCTATTGCCGAAAAATACAAAATACCAA
TCGTCGTTTCCGGTTTTGAACCTGCTGATATGGTGCAGGCGATTTATCATACCGTTTTGCAATTGGAACAAGGAAAACAT
GAAGTAGAAAATCAATATACAAGATTGGTAAAAGAAGAAGGAAACCTGAGAGCAAAAGAAGTCGTAAATACCATTTTTAC
TATTGGAACTCAGGAATGGCGAGGCATTGGTAAAATTGAAAACAGCGGACTTGTATTGAGAGAAAATTATAAAATGTATG
ATGCGAACATCAAATTTTCTATTGAAACAACGAATAGCAAAACGGATAATTTGTGTATTGCAGGCCAAATCCTGACGGGA
AATAAAAGACCAAACGAATGTCCTGAATTCGGAAAAAAATGCAAACCTTCTTTTCCGTTAGGAGCGCCAATGGTTTCGTC
TGAAGGTGCTTGTGCCGCTTATTTCAACTATCTATAA

Upstream 100 bases:

>100_bases
ATCCCGCATGATTTGGCTTACGCCGAAATGGGAGCGCCGCCGATCATTCAGCCCAACTCTACTTTAGTATTCATTATAGA
ACTTTTAAATATCGTTTAAA

Downstream 100 bases:

>100_bases
AACTTAAAATGATTGGATTACTTATTACCGTTTACGCCGGACTTGAACATGCTTTTGAGGCTGATCATTTACTGGCAGTA
AACAATCTTGTTACAAATAG

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKYLSEYRNPELVKHYISEIHKITTKPWNIMEICGGQTHSLVKNGLLDLLPKNIRMIHGPGCPVCVTPVSLINKAIELMK
QGVVLCSFGDMIRVPGSSKSLLQAKAEGGDLRILYSPLEAVNIAAKNLDKEIVFFAVGFETTAPSNALAVLHAQKLGLTN
FSLLVSHVLVPPAMEAILSDKFCTINAFLGAGHVCTIVGLEEYYPIAEKYKIPIVVSGFEPADMVQAIYHTVLQLEQGKH
EVENQYTRLVKEEGNLRAKEVVNTIFTIGTQEWRGIGKIENSGLVLRENYKMYDANIKFSIETTNSKTDNLCIAGQILTG
NKRPNECPEFGKKCKPSFPLGAPMVSSEGACAAYFNYL

Sequences:

>Translated_358_residues
MKYLSEYRNPELVKHYISEIHKITTKPWNIMEICGGQTHSLVKNGLLDLLPKNIRMIHGPGCPVCVTPVSLINKAIELMK
QGVVLCSFGDMIRVPGSSKSLLQAKAEGGDLRILYSPLEAVNIAAKNLDKEIVFFAVGFETTAPSNALAVLHAQKLGLTN
FSLLVSHVLVPPAMEAILSDKFCTINAFLGAGHVCTIVGLEEYYPIAEKYKIPIVVSGFEPADMVQAIYHTVLQLEQGKH
EVENQYTRLVKEEGNLRAKEVVNTIFTIGTQEWRGIGKIENSGLVLRENYKMYDANIKFSIETTNSKTDNLCIAGQILTG
NKRPNECPEFGKKCKPSFPLGAPMVSSEGACAAYFNYL
>Mature_358_residues
MKYLSEYRNPELVKHYISEIHKITTKPWNIMEICGGQTHSLVKNGLLDLLPKNIRMIHGPGCPVCVTPVSLINKAIELMK
QGVVLCSFGDMIRVPGSSKSLLQAKAEGGDLRILYSPLEAVNIAAKNLDKEIVFFAVGFETTAPSNALAVLHAQKLGLTN
FSLLVSHVLVPPAMEAILSDKFCTINAFLGAGHVCTIVGLEEYYPIAEKYKIPIVVSGFEPADMVQAIYHTVLQLEQGKH
EVENQYTRLVKEEGNLRAKEVVNTIFTIGTQEWRGIGKIENSGLVLRENYKMYDANIKFSIETTNSKTDNLCIAGQILTG
NKRPNECPEFGKKCKPSFPLGAPMVSSEGACAAYFNYL

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=42.0765027322404, Blast_Score=322, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39465; Mature: 39465

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLSEYRNPELVKHYISEIHKITTKPWNIMEICGGQTHSLVKNGLLDLLPKNIRMIHGP
CCCHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEECC
GCPVCVTPVSLINKAIELMKQGVVLCSFGDMIRVPGSSKSLLQAKAEGGDLRILYSPLEA
CCCEEECHHHHHHHHHHHHHCCEEEEECCCEEECCCCCHHHHHHHCCCCCEEEEECCHHH
VNIAAKNLDKEIVFFAVGFETTAPSNALAVLHAQKLGLTNFSLLVSHVLVPPAMEAILSD
HHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEHHHCCCCHHHHHHHHHHCCHHHHHHHCC
KFCTINAFLGAGHVCTIVGLEEYYPIAEKYKIPIVVSGFEPADMVQAIYHTVLQLEQGKH
CCEEEEEECCCCCEEEEEEHHHHCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHHHCCHH
EVENQYTRLVKEEGNLRAKEVVNTIFTIGTQEWRGIGKIENSGLVLRENYKMYDANIKFS
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCEEEECEEEEE
IETTNSKTDNLCIAGQILTGNKRPNECPEFGKKCKPSFPLGAPMVSSEGACAAYFNYL
EEECCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MKYLSEYRNPELVKHYISEIHKITTKPWNIMEICGGQTHSLVKNGLLDLLPKNIRMIHGP
CCCHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEECC
GCPVCVTPVSLINKAIELMKQGVVLCSFGDMIRVPGSSKSLLQAKAEGGDLRILYSPLEA
CCCEEECHHHHHHHHHHHHHCCEEEEECCCEEECCCCCHHHHHHHCCCCCEEEEECCHHH
VNIAAKNLDKEIVFFAVGFETTAPSNALAVLHAQKLGLTNFSLLVSHVLVPPAMEAILSD
HHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEHHHCCCCHHHHHHHHHHCCHHHHHHHCC
KFCTINAFLGAGHVCTIVGLEEYYPIAEKYKIPIVVSGFEPADMVQAIYHTVLQLEQGKH
CCEEEEEECCCCCEEEEEEHHHHCCCHHHEEEEEEEECCCHHHHHHHHHHHHHHHHCCHH
EVENQYTRLVKEEGNLRAKEVVNTIFTIGTQEWRGIGKIENSGLVLRENYKMYDANIKFS
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEECCEEEECEEEEE
IETTNSKTDNLCIAGQILTGNKRPNECPEFGKKCKPSFPLGAPMVSSEGACAAYFNYL
EEECCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]