Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
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Accession | NC_009441 |
Length | 6,096,872 |
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The map label for this gene is 146301620
Identifier: 146301620
GI number: 146301620
Start: 4622382
End: 4624322
Strand: Reverse
Name: 146301620
Synonym: Fjoh_3881
Alternate gene names: NA
Gene position: 4624322-4622382 (Counterclockwise)
Preceding gene: 146301621
Following gene: 146301619
Centisome position: 75.85
GC content: 39.41
Gene sequence:
>1941_bases ATGAAACGATATATTTTTAGAAATTTAATAATAGGATCTGTAGTTTTATACTCCTTTGCCAGCTGTACTGATATTCTGGA AGAAAAGCCGCATGATTTTTATGAACCGGGTTATTTTAAAACAGAACAGGGAGTAATACAAGGATTAACCTCTCATTATG CACACCTTCGTTATATTTACGGACAGGCTTATTTTTATAATGCTACACAAACAGGTACAGATGAAGCAACGTATGCGCAG AGTGCAGACGGAAATTTTAAAGATCATGATTTATCGGGAGTTGGTGTAATTAACCCTAATTCAAGCCGTTCAGATGTTTT ATGGAACAATTCATACAATGATATCAACACGGCCAGCGGTATAATCGAGAACGGAGCTGCTGTAGGAGTTTCAAGCAGTC TTATTGCCGAGTCAAAATTTTTCAGGGCTTTCGATTATTTCTTATTGGTTCAGACTTTTGGAGGTGTGCCATTAGATTTA GGAGCTGGAGAATTGAAATTTAACAGTAAACCTTCGAGATCTTCAAAACGTAATACAGTTCCAGAAGTTTATACAAAAGC TGTTTTTCCAGATTTAAAAGCAGCAGTTGCTGAACTGCCGGATGCTGCCCGATTAACAGGTACTGCAACCAAAACATTAG CTCGTTTAATATTGGCAAAAGCGTATTTGACTTATGCATGGTGGCTGGAAAATCCAAATAATATTCCAACTTATCCTGAA GCACCGCGTACAGATCCTGACGGACATAATGCACAATGGTATTTTCAGCAGGCTTATGATTTAGCCGTAGAAGGAATTAA TAATCCTGGTCCTTATGCCTTACTGGATTCTTTTTATGATGTAAACGCAGGTCCAAATGACAGAAACAAAGAAGTAATGT TATATGCAGATCATACTGAATCAAGCGAATATTACAATGGAGGAAGTCTTACTTACGGAAGCGGCGGAGCTCCTGATAAC TTCGCAGGCTGGATGGTAACCTGGAATTACACTTCTATTAGAAGTAAAAACGGAAGCGCTTCGGTTTCTTCTGTTCAGCG TGAAGCCAATCAGTTTTTAGGACGTCCATGGACAAGAATGGCGCCTCCAATTGAAGTTTTTACCAAAACTTTTGCAGATA AAACAAATGATTCAAGATATGACGGAACTTTTGCAGCAGTTTACCGCGGTAACTGGAATTTGCAGGGAACAGGTCTTACA ACTGTGCCGACTTTAACCAATGCAAACGGATTAACGATTAAACCTGGCGACGCTGTATTAACTTTTTTAAATGATGAACC ATTAACACCAATTACTTATCCTTCTGGACAAGGAGACAGCGGTGTTGGAGCAGGAATTTTACCGGGAAGAGCAGATTATG TTATTTCTCCAAACGGAATAAGCAGAATTGTATATCCAGGTTTCTGGAAATTAGGACCATATCGTACCGATAATGCGGGC GGATTAGGACAACCTAATGCTGCAAGTACAAGACCTTACCCTGTAGCAAAATTCTCTGAGTTGTATCTGGTTGCGGCAGA AGCTGCTGTTAAAGGTGCAACAGGAACACTAAGTGCAAGAACTCTTGTAAATGTGATAAGAGCAAGAGCAGGAAAATGGC GCTGGGATAATAACGGAAATACAGCAAAAATAGCAGACAACAGTGCGGCTATGACTACTGCAACCCCGGCAATAATTGAT ATTAATTACATTTTAGCGGAACGTTCACGTGAGTTTTTTGGAGAAGGATACCGCTGGTATGATTTAGTAAGAACTCAAAA ATGGAATGAGATTGCAGGAAAATATTCAATTGGCGGATCTAACTATGGTCAGCATACACCTGAAGTTGTAACCAGAACTA TTGATGCACATCATTATTTAAGACCAATTCCTCAAGGACAGCTAGATGGTATGGAAATGAGTGCAGATGAAAAAGCTAAA TATCAAAATCCGGGTTACTAG
Upstream 100 bases:
>100_bases ATCCTCTTACCAAAGAAGATTTTTGGTTATTGGTACTAATACCCCTAGTACCCGAAATTATTTATTTGGACTTAACTTAA CATTTTAATCAAGAAGAACT
Downstream 100 bases:
>100_bases ATTAACTTTTTAAACAAATTTAGATCCTATTTATAAGAGTTGATTTTACGGTTACTTTTTGATGATCTTAAGTTTGTAAG TTGAAAGCCGAGGGCATTTT
Product: RagB/SusD domain-containing protein
Products: NA
Alternate protein names: RagB/SusD Domain-Containing Protein; Outer Membrane Protein; Ragb/Susd Domain Protein; Lipoprotein; RagB/SusD Family Protein
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MKRYIFRNLIIGSVVLYSFASCTDILEEKPHDFYEPGYFKTEQGVIQGLTSHYAHLRYIYGQAYFYNATQTGTDEATYAQ SADGNFKDHDLSGVGVINPNSSRSDVLWNNSYNDINTASGIIENGAAVGVSSSLIAESKFFRAFDYFLLVQTFGGVPLDL GAGELKFNSKPSRSSKRNTVPEVYTKAVFPDLKAAVAELPDAARLTGTATKTLARLILAKAYLTYAWWLENPNNIPTYPE APRTDPDGHNAQWYFQQAYDLAVEGINNPGPYALLDSFYDVNAGPNDRNKEVMLYADHTESSEYYNGGSLTYGSGGAPDN FAGWMVTWNYTSIRSKNGSASVSSVQREANQFLGRPWTRMAPPIEVFTKTFADKTNDSRYDGTFAAVYRGNWNLQGTGLT TVPTLTNANGLTIKPGDAVLTFLNDEPLTPITYPSGQGDSGVGAGILPGRADYVISPNGISRIVYPGFWKLGPYRTDNAG GLGQPNAASTRPYPVAKFSELYLVAAEAAVKGATGTLSARTLVNVIRARAGKWRWDNNGNTAKIADNSAAMTTATPAIID INYILAERSREFFGEGYRWYDLVRTQKWNEIAGKYSIGGSNYGQHTPEVVTRTIDAHHYLRPIPQGQLDGMEMSADEKAK YQNPGY
Sequences:
>Translated_646_residues MKRYIFRNLIIGSVVLYSFASCTDILEEKPHDFYEPGYFKTEQGVIQGLTSHYAHLRYIYGQAYFYNATQTGTDEATYAQ SADGNFKDHDLSGVGVINPNSSRSDVLWNNSYNDINTASGIIENGAAVGVSSSLIAESKFFRAFDYFLLVQTFGGVPLDL GAGELKFNSKPSRSSKRNTVPEVYTKAVFPDLKAAVAELPDAARLTGTATKTLARLILAKAYLTYAWWLENPNNIPTYPE APRTDPDGHNAQWYFQQAYDLAVEGINNPGPYALLDSFYDVNAGPNDRNKEVMLYADHTESSEYYNGGSLTYGSGGAPDN FAGWMVTWNYTSIRSKNGSASVSSVQREANQFLGRPWTRMAPPIEVFTKTFADKTNDSRYDGTFAAVYRGNWNLQGTGLT TVPTLTNANGLTIKPGDAVLTFLNDEPLTPITYPSGQGDSGVGAGILPGRADYVISPNGISRIVYPGFWKLGPYRTDNAG GLGQPNAASTRPYPVAKFSELYLVAAEAAVKGATGTLSARTLVNVIRARAGKWRWDNNGNTAKIADNSAAMTTATPAIID INYILAERSREFFGEGYRWYDLVRTQKWNEIAGKYSIGGSNYGQHTPEVVTRTIDAHHYLRPIPQGQLDGMEMSADEKAK YQNPGY >Mature_646_residues MKRYIFRNLIIGSVVLYSFASCTDILEEKPHDFYEPGYFKTEQGVIQGLTSHYAHLRYIYGQAYFYNATQTGTDEATYAQ SADGNFKDHDLSGVGVINPNSSRSDVLWNNSYNDINTASGIIENGAAVGVSSSLIAESKFFRAFDYFLLVQTFGGVPLDL GAGELKFNSKPSRSSKRNTVPEVYTKAVFPDLKAAVAELPDAARLTGTATKTLARLILAKAYLTYAWWLENPNNIPTYPE APRTDPDGHNAQWYFQQAYDLAVEGINNPGPYALLDSFYDVNAGPNDRNKEVMLYADHTESSEYYNGGSLTYGSGGAPDN FAGWMVTWNYTSIRSKNGSASVSSVQREANQFLGRPWTRMAPPIEVFTKTFADKTNDSRYDGTFAAVYRGNWNLQGTGLT TVPTLTNANGLTIKPGDAVLTFLNDEPLTPITYPSGQGDSGVGAGILPGRADYVISPNGISRIVYPGFWKLGPYRTDNAG GLGQPNAASTRPYPVAKFSELYLVAAEAAVKGATGTLSARTLVNVIRARAGKWRWDNNGNTAKIADNSAAMTTATPAIID INYILAERSREFFGEGYRWYDLVRTQKWNEIAGKYSIGGSNYGQHTPEVVTRTIDAHHYLRPIPQGQLDGMEMSADEKAK YQNPGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70926; Mature: 70926
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYIFRNLIIGSVVLYSFASCTDILEEKPHDFYEPGYFKTEQGVIQGLTSHYAHLRYIY CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHHEEEEE GQAYFYNATQTGTDEATYAQSADGNFKDHDLSGVGVINPNSSRSDVLWNNSYNDINTASG EEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCHHHH IIENGAAVGVSSSLIAESKFFRAFDYFLLVQTFGGVPLDLGAGELKFNSKPSRSSKRNTV HHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCC PEVYTKAVFPDLKAAVAELPDAARLTGTATKTLARLILAKAYLTYAWWLENPNNIPTYPE HHHHHHHHCHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC APRTDPDGHNAQWYFQQAYDLAVEGINNPGPYALLDSFYDVNAGPNDRNKEVMLYADHTE CCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHCEECCCCCCCCCCEEEEEECCCC SSEYYNGGSLTYGSGGAPDNFAGWMVTWNYTSIRSKNGSASVSSVQREANQFLGRPWTRM CCCEECCCEEECCCCCCCCCCCCEEEEEEEHEEECCCCCCHHHHHHHHHHHHHCCCHHHC APPIEVFTKTFADKTNDSRYDGTFAAVYRGNWNLQGTGLTTVPTLTNANGLTIKPGDAVL CCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEECCCCEECCCEECCCCCEECCCCEEE TFLNDEPLTPITYPSGQGDSGVGAGILPGRADYVISPNGISRIVYPGFWKLGPYRTDNAG EEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCEECCCCCCCCCCC GLGQPNAASTRPYPVAKFSELYLVAAEAAVKGATGTLSARTLVNVIRARAGKWRWDNNGN CCCCCCCCCCCCCCCHHHHHEEEEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCCC TAKIADNSAAMTTATPAIIDINYILAERSREFFGEGYRWYDLVRTQKWNEIAGKYSIGGS EEEEECCCCEEEECCCEEEEEHHHHHHHHHHHHHCCCEEEHHHHHCCHHHHCCEEECCCC NYGQHTPEVVTRTIDAHHYLRPIPQGQLDGMEMSADEKAKYQNPGY CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCC >Mature Secondary Structure MKRYIFRNLIIGSVVLYSFASCTDILEEKPHDFYEPGYFKTEQGVIQGLTSHYAHLRYIY CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHHEEEEE GQAYFYNATQTGTDEATYAQSADGNFKDHDLSGVGVINPNSSRSDVLWNNSYNDINTASG EEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCHHHH IIENGAAVGVSSSLIAESKFFRAFDYFLLVQTFGGVPLDLGAGELKFNSKPSRSSKRNTV HHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCC PEVYTKAVFPDLKAAVAELPDAARLTGTATKTLARLILAKAYLTYAWWLENPNNIPTYPE HHHHHHHHCHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC APRTDPDGHNAQWYFQQAYDLAVEGINNPGPYALLDSFYDVNAGPNDRNKEVMLYADHTE CCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHCEECCCCCCCCCCEEEEEECCCC SSEYYNGGSLTYGSGGAPDNFAGWMVTWNYTSIRSKNGSASVSSVQREANQFLGRPWTRM CCCEECCCEEECCCCCCCCCCCCEEEEEEEHEEECCCCCCHHHHHHHHHHHHHCCCHHHC APPIEVFTKTFADKTNDSRYDGTFAAVYRGNWNLQGTGLTTVPTLTNANGLTIKPGDAVL CCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEECCCCEECCCEECCCCCEECCCCEEE TFLNDEPLTPITYPSGQGDSGVGAGILPGRADYVISPNGISRIVYPGFWKLGPYRTDNAG EEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCEECCCCCCCCCCC GLGQPNAASTRPYPVAKFSELYLVAAEAAVKGATGTLSARTLVNVIRARAGKWRWDNNGN CCCCCCCCCCCCCCCHHHHHEEEEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCCC TAKIADNSAAMTTATPAIIDINYILAERSREFFGEGYRWYDLVRTQKWNEIAGKYSIGGS EEEEECCCCEEEECCCEEEEEHHHHHHHHHHHHHCCCEEEHHHHHCCHHHHCCEEECCCC NYGQHTPEVVTRTIDAHHYLRPIPQGQLDGMEMSADEKAKYQNPGY CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA