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The map label for this gene is xylB [H]

Identifier: 146301619

GI number: 146301619

Start: 4620521

End: 4622236

Strand: Reverse

Name: xylB [H]

Synonym: Fjoh_3880

Alternate gene names: 146301619

Gene position: 4622236-4620521 (Counterclockwise)

Preceding gene: 146301620

Following gene: 146301618

Centisome position: 75.81

GC content: 36.07

Gene sequence:

>1716_bases
ATGATTAAAGGAAATATCTTTTTTTTACTGGCAGCAGCACTTCTGTGTTCTTATACAGGAACTGCTCAGAAAAAAATGCA
ATCAAAAAAAACAGCTGTTTTTTCTAATGTCGTTTACAATGGTGATGATCAGATTTATAAAAATAATCCATTAAAACCAG
ACGAATTTTATACGCCTATTTTACAGGGATGTTATCCAGATCCTGCCATTACCAAAAAAGGAGATGATTACTACATGGTA
TGTTCTTCATTTGCAATGTTTCCCGGCGTGCCTATTTTTCATTCCAAAGATTTAGTAAACTGGACAGATTTGGGAGGTGT
TTTAAACAATGTATCCGAATTTAATCCGCATGATACCGGAATCAGCGCAGGAGTATATGCACCCGGAATTACCTACAATC
CGCACAATGATACTTTTTATATGATTGTGACAGCCTTTTCAGGTGGCCTTGGAAATATCATTGTCAAAACAAAAGATCCC
ATGAAAGGATGGGGAAGCCCTATAAAATTAGACTTCGGCGGTATTGATCCTTCAATCTTTTTTGATGAAAATGGCAAAGG
ATATATCGTTCATAATGACGCACCCGATAAAGGAAAAGAATTATACGAAGGACACCGTGTAATTAAAGTTTGGGAATATG
ATCTTACTACTGATAAAGTAATTCCCGGCACCGATAAAATTATTGTAGACGGAGGAGTAGACCTTTCTAAAAAACCTATT
TGGATTGAAGCACCGCATTTATATAAAAAAAATGGGAAATATTATTTAATGTGTGCCGAAGGCGGTACAGGAGGAAATCA
CAGCGAAGTTATTTTCACCAGTGATAGTCCAAAAGGCCCTTTTAAACCAGCATCAAATAACCCGATTCTTACCCAGCGTT
ATTTTCCAAAAGACAGAGCCAATAAAGTAGACTGGGCAGGCCACGCTGATTTAATACAAGGACCGGACAATAAATATTAC
GGTGTTTTCCTGGCAATCCGACCTAACGAAAAAGACAGAGTAAATATAGGAAGAGAAACTTTTATACTTCCTGTAGACTG
GTCTGGCGAATTTCCTGTTTTTGAAAACGGATTAGTTCCTATGCAGCCAAAACTAAAAATGCCGGCTGGAGTTACAAACC
AAACCGGAAAAAATGGGTTTTTTCCAAATGGAAATTTCACTTTTACCGAAAATTTCACTTCTCAAAAATTAGATTACAGA
TGGATAGGATTAAGAGGTCCTCGCGAAAACTTTAGTTCAGTAAGTAAAAAAGGTTTAGAAATAACGCCTTTTGAAGTAAA
CATTAAAGAAATGAAACCTACTTCGACACTTTTTTACAGACAACAGCACAATACTTTCTCATTTACAGCATCAGTTGATT
ACAAACTGCAGTCAGAAAAAGATCTGGCAGGAATTGTATGTCTTCAAAATGAACGTTTTAATTATGTTTTCGGGATTACT
AAAAAAGGAAATGATACTTTTATAATACTGGAAAGAACAGAAAAAGGACAGTCAAAAATTATAGCAAGTTCTAAAATCAA
AATAACAAATACACTTCGTCTGCAGGTAAAAGCTGCGGGAGACAATTATGAATTCAGTTATGCTGTAAATGGAGTTGATT
TTGAAAATTTAGGCGGAACCGTTTCTGGCGATATTCTTTCAACAAATGCTGCCGGAGGTTTTACAGGGGCATTAGTAGGT
TTATATGCTACTTCGGCTAATGATGCTCATCCATAA

Upstream 100 bases:

>100_bases
TTACGGTTACTTTTTGATGATCTTAAGTTTGTAAGTTGAAAGCCGAGGGCATTTTCTCTCGGCTTTTTAATATTTTTTTG
AATAAATAAATAATACACAA

Downstream 100 bases:

>100_bases
TCAGGATAAAAATTAATTTTTTTTATTCGAAAATGAACTTATAATTTTTAATAAAATGAATGTAAAAATAAAGTCTGTTA
AATGGATCGTACTTTTAAAT

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MIKGNIFFLLAAALLCSYTGTAQKKMQSKKTAVFSNVVYNGDDQIYKNNPLKPDEFYTPILQGCYPDPAITKKGDDYYMV
CSSFAMFPGVPIFHSKDLVNWTDLGGVLNNVSEFNPHDTGISAGVYAPGITYNPHNDTFYMIVTAFSGGLGNIIVKTKDP
MKGWGSPIKLDFGGIDPSIFFDENGKGYIVHNDAPDKGKELYEGHRVIKVWEYDLTTDKVIPGTDKIIVDGGVDLSKKPI
WIEAPHLYKKNGKYYLMCAEGGTGGNHSEVIFTSDSPKGPFKPASNNPILTQRYFPKDRANKVDWAGHADLIQGPDNKYY
GVFLAIRPNEKDRVNIGRETFILPVDWSGEFPVFENGLVPMQPKLKMPAGVTNQTGKNGFFPNGNFTFTENFTSQKLDYR
WIGLRGPRENFSSVSKKGLEITPFEVNIKEMKPTSTLFYRQQHNTFSFTASVDYKLQSEKDLAGIVCLQNERFNYVFGIT
KKGNDTFIILERTEKGQSKIIASSKIKITNTLRLQVKAAGDNYEFSYAVNGVDFENLGGTVSGDILSTNAAGGFTGALVG
LYATSANDAHP

Sequences:

>Translated_571_residues
MIKGNIFFLLAAALLCSYTGTAQKKMQSKKTAVFSNVVYNGDDQIYKNNPLKPDEFYTPILQGCYPDPAITKKGDDYYMV
CSSFAMFPGVPIFHSKDLVNWTDLGGVLNNVSEFNPHDTGISAGVYAPGITYNPHNDTFYMIVTAFSGGLGNIIVKTKDP
MKGWGSPIKLDFGGIDPSIFFDENGKGYIVHNDAPDKGKELYEGHRVIKVWEYDLTTDKVIPGTDKIIVDGGVDLSKKPI
WIEAPHLYKKNGKYYLMCAEGGTGGNHSEVIFTSDSPKGPFKPASNNPILTQRYFPKDRANKVDWAGHADLIQGPDNKYY
GVFLAIRPNEKDRVNIGRETFILPVDWSGEFPVFENGLVPMQPKLKMPAGVTNQTGKNGFFPNGNFTFTENFTSQKLDYR
WIGLRGPRENFSSVSKKGLEITPFEVNIKEMKPTSTLFYRQQHNTFSFTASVDYKLQSEKDLAGIVCLQNERFNYVFGIT
KKGNDTFIILERTEKGQSKIIASSKIKITNTLRLQVKAAGDNYEFSYAVNGVDFENLGGTVSGDILSTNAAGGFTGALVG
LYATSANDAHP
>Mature_571_residues
MIKGNIFFLLAAALLCSYTGTAQKKMQSKKTAVFSNVVYNGDDQIYKNNPLKPDEFYTPILQGCYPDPAITKKGDDYYMV
CSSFAMFPGVPIFHSKDLVNWTDLGGVLNNVSEFNPHDTGISAGVYAPGITYNPHNDTFYMIVTAFSGGLGNIIVKTKDP
MKGWGSPIKLDFGGIDPSIFFDENGKGYIVHNDAPDKGKELYEGHRVIKVWEYDLTTDKVIPGTDKIIVDGGVDLSKKPI
WIEAPHLYKKNGKYYLMCAEGGTGGNHSEVIFTSDSPKGPFKPASNNPILTQRYFPKDRANKVDWAGHADLIQGPDNKYY
GVFLAIRPNEKDRVNIGRETFILPVDWSGEFPVFENGLVPMQPKLKMPAGVTNQTGKNGFFPNGNFTFTENFTSQKLDYR
WIGLRGPRENFSSVSKKGLEITPFEVNIKEMKPTSTLFYRQQHNTFSFTASVDYKLQSEKDLAGIVCLQNERFNYVFGIT
KKGNDTFIILERTEKGQSKIIASSKIKITNTLRLQVKAAGDNYEFSYAVNGVDFENLGGTVSGDILSTNAAGGFTGALVG
LYATSANDAHP

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=542, Percent_Identity=26.9372693726937, Blast_Score=174, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 63214; Mature: 63214

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGNIFFLLAAALLCSYTGTAQKKMQSKKTAVFSNVVYNGDDQIYKNNPLKPDEFYTPI
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCHHHHHHH
LQGCYPDPAITKKGDDYYMVCSSFAMFPGVPIFHSKDLVNWTDLGGVLNNVSEFNPHDTG
HHCCCCCCCCCCCCCCEEEEEECHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCC
ISAGVYAPGITYNPHNDTFYMIVTAFSGGLGNIIVKTKDPMKGWGSPIKLDFGGIDPSIF
CCCCEECCCCEECCCCCEEEEEEEEECCCCCEEEEEECCCHHHCCCEEEEEECCCCCEEE
FDENGKGYIVHNDAPDKGKELYEGHRVIKVWEYDLTTDKVIPGTDKIIVDGGVDLSKKPI
ECCCCCEEEEECCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCE
WIEAPHLYKKNGKYYLMCAEGGTGGNHSEVIFTSDSPKGPFKPASNNPILTQRYFPKDRA
EEECCCCEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
NKVDWAGHADLIQGPDNKYYGVFLAIRPNEKDRVNIGRETFILPVDWSGEFPVFENGLVP
CCCCCCCCCHHEECCCCCEEEEEEEECCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCC
MQPKLKMPAGVTNQTGKNGFFPNGNFTFTENFTSQKLDYRWIGLRGPRENFSSVSKKGLE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCCCE
ITPFEVNIKEMKPTSTLFYRQQHNTFSFTASVDYKLQSEKDLAGIVCLQNERFNYVFGIT
EEEEEEEHHHCCCCEEEEEEECCCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEEEE
KKGNDTFIILERTEKGQSKIIASSKIKITNTLRLQVKAAGDNYEFSYAVNGVDFENLGGT
ECCCCEEEEEECCCCCCEEEEEECEEEEEEEEEEEEEECCCCEEEEEEECCCCHHHCCCE
VSGDILSTNAAGGFTGALVGLYATSANDAHP
EECCEEECCCCCCHHHEEEEEEEECCCCCCC
>Mature Secondary Structure
MIKGNIFFLLAAALLCSYTGTAQKKMQSKKTAVFSNVVYNGDDQIYKNNPLKPDEFYTPI
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEECCCCCEEECCCCCCHHHHHHH
LQGCYPDPAITKKGDDYYMVCSSFAMFPGVPIFHSKDLVNWTDLGGVLNNVSEFNPHDTG
HHCCCCCCCCCCCCCCEEEEEECHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCC
ISAGVYAPGITYNPHNDTFYMIVTAFSGGLGNIIVKTKDPMKGWGSPIKLDFGGIDPSIF
CCCCEECCCCEECCCCCEEEEEEEEECCCCCEEEEEECCCHHHCCCEEEEEECCCCCEEE
FDENGKGYIVHNDAPDKGKELYEGHRVIKVWEYDLTTDKVIPGTDKIIVDGGVDLSKKPI
ECCCCCEEEEECCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCE
WIEAPHLYKKNGKYYLMCAEGGTGGNHSEVIFTSDSPKGPFKPASNNPILTQRYFPKDRA
EEECCCCEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
NKVDWAGHADLIQGPDNKYYGVFLAIRPNEKDRVNIGRETFILPVDWSGEFPVFENGLVP
CCCCCCCCCHHEECCCCCEEEEEEEECCCCCCCEECCCEEEEEEECCCCCCCCCCCCCCC
MQPKLKMPAGVTNQTGKNGFFPNGNFTFTENFTSQKLDYRWIGLRGPRENFSSVSKKGLE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCCCE
ITPFEVNIKEMKPTSTLFYRQQHNTFSFTASVDYKLQSEKDLAGIVCLQNERFNYVFGIT
EEEEEEEHHHCCCCEEEEEEECCCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEEEE
KKGNDTFIILERTEKGQSKIIASSKIKITNTLRLQVKAAGDNYEFSYAVNGVDFENLGGT
ECCCCEEEEEECCCCCCEEEEEECEEEEEEEEEEEEEECCCCEEEEEEECCCCHHHCCCE
VSGDILSTNAAGGFTGALVGLYATSANDAHP
EECCEEECCCCCCHHHEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]