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The map label for this gene is xynA [H]

Identifier: 146301605

GI number: 146301605

Start: 4590617

End: 4592008

Strand: Direct

Name: xynA [H]

Synonym: Fjoh_3866

Alternate gene names: 146301605

Gene position: 4590617-4592008 (Clockwise)

Preceding gene: 146301604

Following gene: 146301608

Centisome position: 75.29

GC content: 35.49

Gene sequence:

>1392_bases
ATGAAAAGTAAATTTTTATTAATGCTGATAAGCGTCGTCTTTTTTCTAAATGCGTGTTCAAAAGACGATAACGACGCTGC
TGAAATTCTGGAAACACCAGTTGCCAACGCTCCAAAAGATGTAAATGATAACGGTTTTAAAGCAAAATGGAATTATGTTT
CCCATTCAAAAAGTTATCTTTTGGATGTTTCAACCAGCGAAGATTTTACCACTATTCTTCCTAATTACAATTCAAAAGAA
GTTACTGATTTAAATGAAGTTGTAACAGGTTTAACCGGCGGAACACAATATTATTACCGAGTGAGAGCTAAAACAGAAGC
CCAAATTTCGGATTATTCAAATGTGATTAGTGTTGTTACTACAGGTTCTAATGGCATTCCCGAAGATCCTACTTTTTTAA
AGGTTAAAGTAAATAAATTAGCGAACCCGTTTTTTGTAGGTATGGCAATAAAAGCTTCACAGCTTACAAACGGAACACCT
TATGATGTTATCCTGAGAAATGAATTCAGCAGTATTTCTGCAGAATACGAAATGAAAATGGATCAAATTTCGACTGCAAG
CGGTGTTTACAACTGGACTGTAGCTGATAAAATTGTGGCGTACGGAAATGCCAATAACATCAATGTGCACGGTCATGCTT
TAGTATGGCATAATGCAGTGCCGCAGTGGCTGAAAGATTTCTCTGGAACTGATGCTGAGTTTGCTGCAGAAGTAAAAAAA
TACATTACAGATGTGGTTACACATTATGCAGGAAAAGTAAAATCATGGGATGTGGTTAACGAAGCTGTTGATGATAACGG
CGGTGCTATGAGAAATACAATTTTCTTGCAGCGAATGGGACCAAACTATGTAAAAGACTGTTTTCAATGGGCCAGAAATG
CTGCAATTGCTGCAGGTGACACTTCATTATTGTTGTTCTATAATGATTATGCTACGTCAACTAATATTGCAAAACAAGAT
AAAGTGTTTGCTATTCTAGAGGATTTAAAAACTGCAAAAGTTATTGACGGTGTTGGTTTTCAAATGCACAACACTTATTT
GAGCCCAACCAAAGCACAGATAGAAACAGATCTAAACAGAGCGGTGGCAAAAGGTTTAAAAATTCATGTTTCAGAATTGG
ATATACAAGTAAACCAATTTAATGATATTTCTAGTTTTACAAACGAAAGAAGACTGGCTCAAAAAGCAAAATACAAAGAA
ATAGTAAAAATTTATAATGCGCTTCCGGCAGCAAATAAATATGCCTTAACCATTTGGGGAATGAAAGATAATGAATCATG
GATTCTGTACAGCACTGAACTGAACCATCCAGGAAATGACTGGCCTTTATTGTATGATTCTAATTTTGCAGTCAAAAGTT
CACATACCGGATTTTTAGAAGGTTTAGATTAA

Upstream 100 bases:

>100_bases
ATAAAGTAATTACAACCAATGTGTTATATAATAAAAAACAGAAACTATAAATCAGAGTATTCATCTTAACAATAGAGAAT
ATTCTATAATAAAAAACAGT

Downstream 100 bases:

>100_bases
ATCTGAAGATTACCTAATAAAAAATAAAAGCCTGCGAAACATAGATTTCGCAGGCTTTTTTATTTGATCGTGATTTATGA
GTTATTTTTCTAACAAATAG

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase A; 1,4-beta-D-xylan xylanohydrolase A; XYLA [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MKSKFLLMLISVVFFLNACSKDDNDAAEILETPVANAPKDVNDNGFKAKWNYVSHSKSYLLDVSTSEDFTTILPNYNSKE
VTDLNEVVTGLTGGTQYYYRVRAKTEAQISDYSNVISVVTTGSNGIPEDPTFLKVKVNKLANPFFVGMAIKASQLTNGTP
YDVILRNEFSSISAEYEMKMDQISTASGVYNWTVADKIVAYGNANNINVHGHALVWHNAVPQWLKDFSGTDAEFAAEVKK
YITDVVTHYAGKVKSWDVVNEAVDDNGGAMRNTIFLQRMGPNYVKDCFQWARNAAIAAGDTSLLLFYNDYATSTNIAKQD
KVFAILEDLKTAKVIDGVGFQMHNTYLSPTKAQIETDLNRAVAKGLKIHVSELDIQVNQFNDISSFTNERRLAQKAKYKE
IVKIYNALPAANKYALTIWGMKDNESWILYSTELNHPGNDWPLLYDSNFAVKSSHTGFLEGLD

Sequences:

>Translated_463_residues
MKSKFLLMLISVVFFLNACSKDDNDAAEILETPVANAPKDVNDNGFKAKWNYVSHSKSYLLDVSTSEDFTTILPNYNSKE
VTDLNEVVTGLTGGTQYYYRVRAKTEAQISDYSNVISVVTTGSNGIPEDPTFLKVKVNKLANPFFVGMAIKASQLTNGTP
YDVILRNEFSSISAEYEMKMDQISTASGVYNWTVADKIVAYGNANNINVHGHALVWHNAVPQWLKDFSGTDAEFAAEVKK
YITDVVTHYAGKVKSWDVVNEAVDDNGGAMRNTIFLQRMGPNYVKDCFQWARNAAIAAGDTSLLLFYNDYATSTNIAKQD
KVFAILEDLKTAKVIDGVGFQMHNTYLSPTKAQIETDLNRAVAKGLKIHVSELDIQVNQFNDISSFTNERRLAQKAKYKE
IVKIYNALPAANKYALTIWGMKDNESWILYSTELNHPGNDWPLLYDSNFAVKSSHTGFLEGLD
>Mature_463_residues
MKSKFLLMLISVVFFLNACSKDDNDAAEILETPVANAPKDVNDNGFKAKWNYVSHSKSYLLDVSTSEDFTTILPNYNSKE
VTDLNEVVTGLTGGTQYYYRVRAKTEAQISDYSNVISVVTTGSNGIPEDPTFLKVKVNKLANPFFVGMAIKASQLTNGTP
YDVILRNEFSSISAEYEMKMDQISTASGVYNWTVADKIVAYGNANNINVHGHALVWHNAVPQWLKDFSGTDAEFAAEVKK
YITDVVTHYAGKVKSWDVVNEAVDDNGGAMRNTIFLQRMGPNYVKDCFQWARNAAIAAGDTSLLLFYNDYATSTNIAKQD
KVFAILEDLKTAKVIDGVGFQMHNTYLSPTKAQIETDLNRAVAKGLKIHVSELDIQVNQFNDISSFTNERRLAQKAKYKE
IVKIYNALPAANKYALTIWGMKDNESWILYSTELNHPGNDWPLLYDSNFAVKSSHTGFLEGLD

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM2 (carbohydrate binding type-2) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR018366
- InterPro:   IPR001919
- InterPro:   IPR002883
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009031 [H]

Pfam domain/function: PF02013 CBM_10; PF00553 CBM_2; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 51629; Mature: 51629

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50853 FN3 ; PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKFLLMLISVVFFLNACSKDDNDAAEILETPVANAPKDVNDNGFKAKWNYVSHSKSYL
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEE
LDVSTSEDFTTILPNYNSKEVTDLNEVVTGLTGGTQYYYRVRAKTEAQISDYSNVISVVT
EEECCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCEEEEEE
TGSNGIPEDPTFLKVKVNKLANPFFVGMAIKASQLTNGTPYDVILRNEFSSISAEYEMKM
ECCCCCCCCCCEEEEEHHHCCCCEEEEEEEEEHHCCCCCCEEEEEECCCCCCCHHHHHHH
DQISTASGVYNWTVADKIVAYGNANNINVHGHALVWHNAVPQWLKDFSGTDAEFAAEVKK
HHHHHCCCEEEEEEHHEEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHH
YITDVVTHYAGKVKSWDVVNEAVDDNGGAMRNTIFLQRMGPNYVKDCFQWARNAAIAAGD
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCEEEECC
TSLLLFYNDYATSTNIAKQDKVFAILEDLKTAKVIDGVGFQMHNTYLSPTKAQIETDLNR
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
AVAKGLKIHVSELDIQVNQFNDISSFTNERRLAQKAKYKEIVKIYNALPAANKYALTIWG
HHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
MKDNESWILYSTELNHPGNDWPLLYDSNFAVKSSHTGFLEGLD
ECCCCCEEEEEEECCCCCCCCCEEECCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MKSKFLLMLISVVFFLNACSKDDNDAAEILETPVANAPKDVNDNGFKAKWNYVSHSKSYL
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEE
LDVSTSEDFTTILPNYNSKEVTDLNEVVTGLTGGTQYYYRVRAKTEAQISDYSNVISVVT
EEECCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCEEEEEE
TGSNGIPEDPTFLKVKVNKLANPFFVGMAIKASQLTNGTPYDVILRNEFSSISAEYEMKM
ECCCCCCCCCCEEEEEHHHCCCCEEEEEEEEEHHCCCCCCEEEEEECCCCCCCHHHHHHH
DQISTASGVYNWTVADKIVAYGNANNINVHGHALVWHNAVPQWLKDFSGTDAEFAAEVKK
HHHHHCCCEEEEEEHHEEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHH
YITDVVTHYAGKVKSWDVVNEAVDDNGGAMRNTIFLQRMGPNYVKDCFQWARNAAIAAGD
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCEEEECC
TSLLLFYNDYATSTNIAKQDKVFAILEDLKTAKVIDGVGFQMHNTYLSPTKAQIETDLNR
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
AVAKGLKIHVSELDIQVNQFNDISSFTNERRLAQKAKYKEIVKIYNALPAANKYALTIWG
HHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
MKDNESWILYSTELNHPGNDWPLLYDSNFAVKSSHTGFLEGLD
ECCCCCEEEEEEECCCCCCCCCEEECCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507868; 7881909 [H]