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The map label for this gene is 146301598

Identifier: 146301598

GI number: 146301598

Start: 4574938

End: 4575516

Strand: Reverse

Name: 146301598

Synonym: Fjoh_3859

Alternate gene names: NA

Gene position: 4575516-4574938 (Counterclockwise)

Preceding gene: 146301606

Following gene: 146301597

Centisome position: 75.05

GC content: 31.78

Gene sequence:

>579_bases
ATGAGTTCTAATTTGATTATACGGTTACGTGCTGGTGATGATTCATGTTTTAAACAAATATATGATTTATACCATTTTAA
GGTATTTTGTTTTGTTAAAAAATATACTTCACAATTGGCTGATTCTGAAGATGTGACACAGAATGTTTTTATTCATCTTT
GGAAATACCGTACAAAATTAGACCCTGAAGTCAGTCTGGAAGCCGTTCTTTTTAAAAGCTCTAAGCAGGAAATTTCAAGA
TGGTATAAAAAACAAAACCGAATCTTTTCGGTTGAAGATGATAAATTAATAAAAGAACTTGACAGCAAAACACAGTCTGA
AGAAGAAGTGAGCCTGCAAATGGAAAAAATAGAATATCTTCTGGATAAAATCCCTGCTAAAAGAAGAAAAATATTCAGTC
TCCATAAGTTTGAAGACCGCAGTTATAAAGAGATTGCCGAAGAAATGGATATGTCTCCGGGGGCTGTTGCAAACCAAATT
TCTAAAACCTTACAATTTCTTAAGAAAAACTCTGTAAATAATCATGAGTTATATTGGTTTGCTTTATTCTTTCTATATCA
GACAGAATTAGTTTCGTAG

Upstream 100 bases:

>100_bases
ATCAATATTAACAAATTATTAAATGACAAAAATCAAAAAATAGCAATAAAGGTTTATCATACTTTTGTAAGGGTCTTCTT
TAACAATTGAAATTTTTATT

Downstream 100 bases:

>100_bases
AAAAATTAGAATATCCATACCTTTTTGCCGCATTTAAGAAGTATTTTTCATTCTAAAACTCAGCTGCTAAATCTTTACTC
ACATTAAGAAAACGTTAATA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-W Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSSNLIIRLRAGDDSCFKQIYDLYHFKVFCFVKKYTSQLADSEDVTQNVFIHLWKYRTKLDPEVSLEAVLFKSSKQEISR
WYKKQNRIFSVEDDKLIKELDSKTQSEEEVSLQMEKIEYLLDKIPAKRRKIFSLHKFEDRSYKEIAEEMDMSPGAVANQI
SKTLQFLKKNSVNNHELYWFALFFLYQTELVS

Sequences:

>Translated_192_residues
MSSNLIIRLRAGDDSCFKQIYDLYHFKVFCFVKKYTSQLADSEDVTQNVFIHLWKYRTKLDPEVSLEAVLFKSSKQEISR
WYKKQNRIFSVEDDKLIKELDSKTQSEEEVSLQMEKIEYLLDKIPAKRRKIFSLHKFEDRSYKEIAEEMDMSPGAVANQI
SKTLQFLKKNSVNNHELYWFALFFLYQTELVS
>Mature_191_residues
SSNLIIRLRAGDDSCFKQIYDLYHFKVFCFVKKYTSQLADSEDVTQNVFIHLWKYRTKLDPEVSLEAVLFKSSKQEISRW
YKKQNRIFSVEDDKLIKELDSKTQSEEEVSLQMEKIEYLLDKIPAKRRKIFSLHKFEDRSYKEIAEEMDMSPGAVANQIS
KTLQFLKKNSVNNHELYWFALFFLYQTELVS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22910; Mature: 22779

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNLIIRLRAGDDSCFKQIYDLYHFKVFCFVKKYTSQLADSEDVTQNVFIHLWKYRTKL
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
DPEVSLEAVLFKSSKQEISRWYKKQNRIFSVEDDKLIKELDSKTQSEEEVSLQMEKIEYL
CCCHHHHHHHHHCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LDKIPAKRRKIFSLHKFEDRSYKEIAEEMDMSPGAVANQISKTLQFLKKNSVNNHELYWF
HHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
ALFFLYQTELVS
HHHHHHHHHHCC
>Mature Secondary Structure 
SSNLIIRLRAGDDSCFKQIYDLYHFKVFCFVKKYTSQLADSEDVTQNVFIHLWKYRTKL
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
DPEVSLEAVLFKSSKQEISRWYKKQNRIFSVEDDKLIKELDSKTQSEEEVSLQMEKIEYL
CCCHHHHHHHHHCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LDKIPAKRRKIFSLHKFEDRSYKEIAEEMDMSPGAVANQISKTLQFLKKNSVNNHELYWF
HHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
ALFFLYQTELVS
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA