BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is ydfG [C]

Identifier: 146301565

GI number: 146301565

Start: 4534377

End: 4535081

Strand: Direct

Name: ydfG [C]

Synonym: Fjoh_3826

Alternate gene names: 146301565

Gene position: 4534377-4535081 (Clockwise)

Preceding gene: 146301562

Following gene: 146301566

Centisome position: 74.37

GC content: 42.98

Gene sequence:

>705_bases
ATGCAGAACATAGAGAACAAAACAGCGTATATAACCGGAGGGGCAAAAGGCATCGGTTTTGGTATTGCAGAAGCTTTAGT
AAAAAACGGAGTAAAAGTAGCTATTTCAGGAAGGGATACCGATGCACTTGAAAAGGCGCAGCAGGCATTAGGGAAACAAA
ATGTACTGATCCTGCAGTCTGATATCAGAAATTTCAATGATGAACGCAAAGCTGTTGAACATATCGTATCTGAATTCGGT
AAACTGGATATTGTCATTGCCAATGCAGGAATCGGAAAATTTGCACCTATAGACGAAATGTCACTTGAGGAATGGAATAC
GATGATTGACACGAATCTCACTGGGGCTTTCCATACCCTGAAAGCAGCAGTGGAACAGCTCAAAGAAAACAAAGGCTATT
ACATTTCAATTGCCTCCCTGGCCGGAGCAAATTTCTTTGCTAAAGGCGCAGGTTACAATGCTTCAAAATTTGGCCTGGTG
GGCTTTACCCAGGCTGCCATGCTGGATCTGCGTGATTATGATGTAAAGTGCACTACTATTATGCCCGGGTCGGTTACTTC
CAACTTCAACAGCCATATTCCAAGTGAAGAGGATAAATGGAAAATCCAGCCCTCTGATATAGGACAGATGGTCGTGGATC
TCTTAAGAATGAACCCTAATGTGCTGCCCAGCAAAATAGAAGTCCGTCCAACGAAAACGAAATAA

Upstream 100 bases:

>100_bases
ATTTATCGTATTTTTATAACCTATCTTGTTTTTAAACAAAATATATACAAAACATCAGACTTAGATAAGAAAGTAAAAAC
AATAAAAGTAAAAAATAACT

Downstream 100 bases:

>100_bases
ATAAAATGAACTGTCAAAAATACATGTGCAATAATTACACTTACACAATCTAAAACACAAGCTTGTCTGTCCGAAAAAAA
CAATGCTTTATAATTGATTT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MQNIENKTAYITGGAKGIGFGIAEALVKNGVKVAISGRDTDALEKAQQALGKQNVLILQSDIRNFNDERKAVEHIVSEFG
KLDIVIANAGIGKFAPIDEMSLEEWNTMIDTNLTGAFHTLKAAVEQLKENKGYYISIASLAGANFFAKGAGYNASKFGLV
GFTQAAMLDLRDYDVKCTTIMPGSVTSNFNSHIPSEEDKWKIQPSDIGQMVVDLLRMNPNVLPSKIEVRPTKTK

Sequences:

>Translated_234_residues
MQNIENKTAYITGGAKGIGFGIAEALVKNGVKVAISGRDTDALEKAQQALGKQNVLILQSDIRNFNDERKAVEHIVSEFG
KLDIVIANAGIGKFAPIDEMSLEEWNTMIDTNLTGAFHTLKAAVEQLKENKGYYISIASLAGANFFAKGAGYNASKFGLV
GFTQAAMLDLRDYDVKCTTIMPGSVTSNFNSHIPSEEDKWKIQPSDIGQMVVDLLRMNPNVLPSKIEVRPTKTK
>Mature_234_residues
MQNIENKTAYITGGAKGIGFGIAEALVKNGVKVAISGRDTDALEKAQQALGKQNVLILQSDIRNFNDERKAVEHIVSEFG
KLDIVIANAGIGKFAPIDEMSLEEWNTMIDTNLTGAFHTLKAAVEQLKENKGYYISIASLAGANFFAKGAGYNASKFGLV
GFTQAAMLDLRDYDVKCTTIMPGSVTSNFNSHIPSEEDKWKIQPSDIGQMVVDLLRMNPNVLPSKIEVRPTKTK

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI31542939, Length=206, Percent_Identity=32.0388349514563, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI15277342, Length=207, Percent_Identity=27.536231884058, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=27.319587628866, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI5031737, Length=201, Percent_Identity=24.3781094527363, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=25, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI40254992, Length=207, Percent_Identity=24.1545893719807, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI19923817, Length=193, Percent_Identity=27.979274611399, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=32.5581395348837, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI32483357, Length=202, Percent_Identity=25.7425742574257, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=24.2105263157895, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=28.3505154639175, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI4758504, Length=208, Percent_Identity=26.4423076923077, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=29.0909090909091, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI10190704, Length=188, Percent_Identity=25.531914893617, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503817, Length=180, Percent_Identity=24.4444444444444, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4504505, Length=223, Percent_Identity=25.5605381165919, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI83715985, Length=209, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI40548397, Length=216, Percent_Identity=28.7037037037037, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI214010158, Length=216, Percent_Identity=28.7037037037037, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI214010156, Length=216, Percent_Identity=28.7037037037037, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI22758144, Length=216, Percent_Identity=28.7037037037037, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI20149619, Length=216, Percent_Identity=23.6111111111111, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=26.3736263736264, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=236, Percent_Identity=30.0847457627119, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=30.1020408163265, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=31.7460317460317, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790717, Length=201, Percent_Identity=30.3482587064677, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789057, Length=219, Percent_Identity=26.4840182648402, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789208, Length=201, Percent_Identity=26.865671641791, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788459, Length=189, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786812, Length=197, Percent_Identity=25.3807106598985, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367365, Length=221, Percent_Identity=27.6018099547511, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082100, Length=222, Percent_Identity=22.972972972973, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=26.5625, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=207, Percent_Identity=26.5700483091787, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=242, Percent_Identity=26.4462809917355, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=194, Percent_Identity=30.9278350515464, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=197, Percent_Identity=25.8883248730964, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=201, Percent_Identity=28.8557213930348, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=28.1407035175879, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=199, Percent_Identity=28.643216080402, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=215, Percent_Identity=28.3720930232558, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=27.6381909547739, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=187, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=198, Percent_Identity=25.2525252525253, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=194, Percent_Identity=29.3814432989691, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=204, Percent_Identity=27.4509803921569, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=28.2178217821782, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=24.6861924686192, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=242, Percent_Identity=24.3801652892562, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=238, Percent_Identity=24.3697478991597, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=203, Percent_Identity=27.0935960591133, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=240, Percent_Identity=23.75, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=197, Percent_Identity=24.8730964467005, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=226, Percent_Identity=25.6637168141593, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=25.1256281407035, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=23.8578680203046, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=224, Percent_Identity=22.7678571428571, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=226, Percent_Identity=23.4513274336283, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=226, Percent_Identity=23.4513274336283, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=192, Percent_Identity=32.8125, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6320089, Length=224, Percent_Identity=26.7857142857143, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=239, Percent_Identity=27.6150627615063, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=26.6331658291457, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI23397609, Length=199, Percent_Identity=30.6532663316583, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24644339, Length=203, Percent_Identity=29.064039408867, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21355319, Length=205, Percent_Identity=29.2682926829268, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=25.7142857142857, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=28.6458333333333, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571526, Length=203, Percent_Identity=26.1083743842365, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=27.9352226720648, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=23.5, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281364494, Length=252, Percent_Identity=26.1904761904762, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007238, Length=188, Percent_Identity=26.5957446808511, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24639444, Length=212, Percent_Identity=24.0566037735849, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI17737361, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649181, Length=194, Percent_Identity=25.2577319587629, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=245, Percent_Identity=23.6734693877551, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI18859837, Length=203, Percent_Identity=25.615763546798, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=245, Percent_Identity=21.2244897959184, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357673, Length=233, Percent_Identity=21.8884120171674, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21355631, Length=185, Percent_Identity=24.3243243243243, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24643142, Length=212, Percent_Identity=21.6981132075472, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25470; Mature: 25470

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIENKTAYITGGAKGIGFGIAEALVKNGVKVAISGRDTDALEKAQQALGKQNVLILQS
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEH
DIRNFNDERKAVEHIVSEFGKLDIVIANAGIGKFAPIDEMSLEEWNTMIDTNLTGAFHTL
HHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH
KAAVEQLKENKGYYISIASLAGANFFAKGAGYNASKFGLVGFTQAAMLDLRDYDVKCTTI
HHHHHHHHHCCCEEEEEEHHCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHCCCEEEEEE
MPGSVTSNFNSHIPSEEDKWKIQPSDIGQMVVDLLRMNPNVLPSKIEVRPTKTK
CCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MQNIENKTAYITGGAKGIGFGIAEALVKNGVKVAISGRDTDALEKAQQALGKQNVLILQS
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEH
DIRNFNDERKAVEHIVSEFGKLDIVIANAGIGKFAPIDEMSLEEWNTMIDTNLTGAFHTL
HHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH
KAAVEQLKENKGYYISIASLAGANFFAKGAGYNASKFGLVGFTQAAMLDLRDYDVKCTTI
HHHHHHHHHCCCEEEEEEHHCCCCEEECCCCCCCCCCCCEEHHHHHHHHHHCCCEEEEEE
MPGSVTSNFNSHIPSEEDKWKIQPSDIGQMVVDLLRMNPNVLPSKIEVRPTKTK
CCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]