| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is bphB [H]
Identifier: 146301559
GI number: 146301559
Start: 4527070
End: 4529337
Strand: Reverse
Name: bphB [H]
Synonym: Fjoh_3820
Alternate gene names: 146301559
Gene position: 4529337-4527070 (Counterclockwise)
Preceding gene: 146301560
Following gene: 146301557
Centisome position: 74.29
GC content: 38.36
Gene sequence:
>2268_bases ATGAAGTTTAAAGATATAGTTAACCGTGATTTGGTTACGTTGACCAATTGCGACCAAGAACCTATACATATTCCGGGACA AATCCAGCCGCATGGCTTTTTAATTGGGCTTACTAATGATTGGATAATAGACTATTGCACCAGTAATATTTCATCTTTCA TTCCTCTAAGCCATACTCAGGCATTAGGAAATAAATTTGCAGCTGTTTTTGGTACACAAGCGCAGGAACGTATTTTTAGT TATATAAATTCAGATACGGTGCAGGATGTGTTTCCTTTGGAAATAGAACTTCTTAACGAAAAGTTTCAGGTCAATATTCA CAAAAGTGATGATATTTATGTTTTAGAAGCAGAACCTCAGTTCGACAAACAGATTCTGGCAGACGTTTATACACAGACTA TCCAGTTTGTGACACAGATGAACAACACAAAATCGCTGAAAGATCTCTGTGCCCTGGTAGCAGAAGGTACAAGGGAAATA ACTGGGTATGACCGTGTAATGATTTATCGTTTCGATGAGCAGTATAACGGTGAAGTTTATGCAGAAAGCTGCAATAAAGA TCTTGAACCATTTTTAGGATTGCATTATCCGCATACTGATATTCCGGTACAGGCCAGAGAACTTTACATAAAGAACCAGC TCAGGTTGATTGTAGATATTAATTATCAGCCAGTTCCTATTTTTACAATCGATGACAGCAAGGACAAAAACCTTGATTTA AGCCTTGCGATTTTAAGAAGCACATCGCCCATTCATGTTGAATATCTTAAAAATATGGGTGTCGGCGCAACGCTTACTAT TTCACTTATACACCATGACCGTTTGTGGGGTCTTATTGCATGCCATCATTATTCGAAAAAGAATATTTCTCCTGCGGTGC GCCTTGCTGCAAAACTTCAGGGGCAGTTCATTACCTCGCAGATTGATATCCGGGAATCAAACGATGAAAATATTAATTCA AAGAAATCCATTGAAGCATTAGAGCGTTTAACAGCTCTTGATCTGCCGCTGTCTGAAGATTCCTTGAACGTTATAATCAA AATGCCCGAGCTGCTTGCCTTATGCAATTCAGGAGGAGTTTCGATAATGTTTCGAAATAAAATATACAGAAATGGTCTGA CTCCAGAAGATGAACAGATAGAAGCTTTAGTGGAGCGAATAGAGAATAAGAGAGTCGCCGAATTTTATGCGACCAGAAAA ATCAGCGATGATTTTCCTGAACTGGAAAGATCTTCCAATTTTGCCGGAGTAATTTATCATCCTCTTGGAAATTCCAATCA CATCATCTGGTACAGGCCTGAAACTATCTCAGAAATTCACTGGGCAGGTGATCCGGAAAAAAGCATTGTTAAGGATGAAA AAGGGCTGCATCCAAGAAACTCATTTAATATCTGGAAAGAGACTGTTAAAGGACAGAGTACTATCTGGAGACAGTATGAA ATAAATGCAGCGGCTAAATATGCCCATTCTCTTCATAATAATCTGATGATGATTCTGCTGAGTGAGGAAGAAGAAAGATA CAGACTTCAAAGTGAAATCTTGAGAGAGACTAATTCTGAACTGGAAAATATAAACTGGATCAGTACACATGATCTTCAGG AACCTCTTAGGAAAATACAAATGATTACCTCTAAGCTGCTTTCTGAAAAAAAAGGCGACCGCGAAGATCCTGAATTTGAT TCACTGGAACGTGTATCAAAATCTGCTGCAAGGATGCGTGGACTGCTGCAGGATATTTTGAAATACACCCGTATTAAAAA CACCAGAGAGGCAGCTGAAAAAATTGACCTTAATCTCATTTTTGAAGATACATTAGATGAAATCAGCGAAGCGATAACTG AAAATAATGCGGTTATTGAGTGTGAGAAACTTCCGGAAGTTAATGCAATTGGGTTTCTCATGAAGCAGTTGTTTTTAAAT ATTATTCAAAACTCCTTAAAATATGCTTCGCCTGACCGATCACCTGTAATTAAAATTACGGCTTCGCAGGAGCCGGTACT TATAAAAGAATCGTTTAATGTATATTGTTCCTGGGTTAAATTCTCGGATAATGGTATCGGTTTTGATCAAAAGTACGCAG ATTCAATATTTAAAGTTTTTACAAGACTTCATACCCAGCAGCAATACAGCGGCTCTGGAATTGGACTGGCGCTGTGCAAA AAAATTATGCAGACATTAGGAGGAACAATTACAGCAGAGGGAAAAGTGGACCAAGGTACCTCCATTACCATTTATTTTCC CTGTGATTCGCAGGATACCCTTATCTAA
Upstream 100 bases:
>100_bases AAATATAAAATATCGACAATTTTATAATTGTTGCAGTAACGTTACAGATGTAGTTTCCAGCTCTAAAAGCATGAAGAGTG CTTTCTAAATTCAGTTATTA
Downstream 100 bases:
>100_bases AATTTAATATTTAAGAAAAAGCAGCCTGATTCCGGCTGGCAGAAAAATCAGATCGTAATATTGAAATTTTCAAACGACGG CTGTTTGGTATGCGTCTCGG
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 755
Protein sequence:
>755_residues MKFKDIVNRDLVTLTNCDQEPIHIPGQIQPHGFLIGLTNDWIIDYCTSNISSFIPLSHTQALGNKFAAVFGTQAQERIFS YINSDTVQDVFPLEIELLNEKFQVNIHKSDDIYVLEAEPQFDKQILADVYTQTIQFVTQMNNTKSLKDLCALVAEGTREI TGYDRVMIYRFDEQYNGEVYAESCNKDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYQPVPIFTIDDSKDKNLDL SLAILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPAVRLAAKLQGQFITSQIDIRESNDENINS KKSIEALERLTALDLPLSEDSLNVIIKMPELLALCNSGGVSIMFRNKIYRNGLTPEDEQIEALVERIENKRVAEFYATRK ISDDFPELERSSNFAGVIYHPLGNSNHIIWYRPETISEIHWAGDPEKSIVKDEKGLHPRNSFNIWKETVKGQSTIWRQYE INAAAKYAHSLHNNLMMILLSEEEERYRLQSEILRETNSELENINWISTHDLQEPLRKIQMITSKLLSEKKGDREDPEFD SLERVSKSAARMRGLLQDILKYTRIKNTREAAEKIDLNLIFEDTLDEISEAITENNAVIECEKLPEVNAIGFLMKQLFLN IIQNSLKYASPDRSPVIKITASQEPVLIKESFNVYCSWVKFSDNGIGFDQKYADSIFKVFTRLHTQQQYSGSGIGLALCK KIMQTLGGTITAEGKVDQGTSITIYFPCDSQDTLI
Sequences:
>Translated_755_residues MKFKDIVNRDLVTLTNCDQEPIHIPGQIQPHGFLIGLTNDWIIDYCTSNISSFIPLSHTQALGNKFAAVFGTQAQERIFS YINSDTVQDVFPLEIELLNEKFQVNIHKSDDIYVLEAEPQFDKQILADVYTQTIQFVTQMNNTKSLKDLCALVAEGTREI TGYDRVMIYRFDEQYNGEVYAESCNKDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYQPVPIFTIDDSKDKNLDL SLAILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPAVRLAAKLQGQFITSQIDIRESNDENINS KKSIEALERLTALDLPLSEDSLNVIIKMPELLALCNSGGVSIMFRNKIYRNGLTPEDEQIEALVERIENKRVAEFYATRK ISDDFPELERSSNFAGVIYHPLGNSNHIIWYRPETISEIHWAGDPEKSIVKDEKGLHPRNSFNIWKETVKGQSTIWRQYE INAAAKYAHSLHNNLMMILLSEEEERYRLQSEILRETNSELENINWISTHDLQEPLRKIQMITSKLLSEKKGDREDPEFD SLERVSKSAARMRGLLQDILKYTRIKNTREAAEKIDLNLIFEDTLDEISEAITENNAVIECEKLPEVNAIGFLMKQLFLN IIQNSLKYASPDRSPVIKITASQEPVLIKESFNVYCSWVKFSDNGIGFDQKYADSIFKVFTRLHTQQQYSGSGIGLALCK KIMQTLGGTITAEGKVDQGTSITIYFPCDSQDTLI >Mature_755_residues MKFKDIVNRDLVTLTNCDQEPIHIPGQIQPHGFLIGLTNDWIIDYCTSNISSFIPLSHTQALGNKFAAVFGTQAQERIFS YINSDTVQDVFPLEIELLNEKFQVNIHKSDDIYVLEAEPQFDKQILADVYTQTIQFVTQMNNTKSLKDLCALVAEGTREI TGYDRVMIYRFDEQYNGEVYAESCNKDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYQPVPIFTIDDSKDKNLDL SLAILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPAVRLAAKLQGQFITSQIDIRESNDENINS KKSIEALERLTALDLPLSEDSLNVIIKMPELLALCNSGGVSIMFRNKIYRNGLTPEDEQIEALVERIENKRVAEFYATRK ISDDFPELERSSNFAGVIYHPLGNSNHIIWYRPETISEIHWAGDPEKSIVKDEKGLHPRNSFNIWKETVKGQSTIWRQYE INAAAKYAHSLHNNLMMILLSEEEERYRLQSEILRETNSELENINWISTHDLQEPLRKIQMITSKLLSEKKGDREDPEFD SLERVSKSAARMRGLLQDILKYTRIKNTREAAEKIDLNLIFEDTLDEISEAITENNAVIECEKLPEVNAIGFLMKQLFLN IIQNSLKYASPDRSPVIKITASQEPVLIKESFNVYCSWVKFSDNGIGFDQKYADSIFKVFTRLHTQQQYSGSGIGLALCK KIMQTLGGTITAEGKVDQGTSITIYFPCDSQDTLI
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1786912, Length=261, Percent_Identity=24.904214559387, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1790436, Length=250, Percent_Identity=23.6, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1788713, Length=227, Percent_Identity=22.9074889867841, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 86276; Mature: 86276
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKDIVNRDLVTLTNCDQEPIHIPGQIQPHGFLIGLTNDWIIDYCTSNISSFIPLSHTQ CCCHHHHCCCEEEEECCCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHCCCCHHHH ALGNKFAAVFGTQAQERIFSYINSDTVQDVFPLEIELLNEKFQVNIHKSDDIYVLEAEPQ HHHHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCCCEEECCEEEEEEECCCCEEEEECCCC FDKQILADVYTQTIQFVTQMNNTKSLKDLCALVAEGTREITGYDRVMIYRFDEQYNGEVY HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEE AESCNKDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYQPVPIFTIDDSKDKNLDL EHHCCCCCHHHHCCCCCCCCCCCHHHHHHEECCEEEEEECCCCCEEEEEECCCCCCCCEE SLAILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPAVRLAAKLQ EEEEEECCCCEEHHHHHCCCCCEEEEEEEEECCHHHHHHHEECCCCCCCCHHHHHHHHHC GQFITSQIDIRESNDENINSKKSIEALERLTALDLPLSEDSLNVIIKMPELLALCNSGGV CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCCE SIMFRNKIYRNGLTPEDEQIEALVERIENKRVAEFYATRKISDDFPELERSSNFAGVIYH EEEEECHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEEEE PLGNSNHIIWYRPETISEIHWAGDPEKSIVKDEKGLHPRNSFNIWKETVKGQSTIWRQYE CCCCCCCEEEECCCCCCCEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHEEEEEE INAAAKYAHSLHNNLMMILLSEEEERYRLQSEILRETNSELENINWISTHDLQEPLRKIQ CCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MITSKLLSEKKGDREDPEFDSLERVSKSAARMRGLLQDILKYTRIKNTREAAEKIDLNLI HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEE FEDTLDEISEAITENNAVIECEKLPEVNAIGFLMKQLFLNIIQNSLKYASPDRSPVIKIT EHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ASQEPVLIKESFNVYCSWVKFSDNGIGFDQKYADSIFKVFTRLHTQQQYSGSGIGLALCK CCCCCEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH KIMQTLGGTITAEGKVDQGTSITIYFPCDSQDTLI HHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCC >Mature Secondary Structure MKFKDIVNRDLVTLTNCDQEPIHIPGQIQPHGFLIGLTNDWIIDYCTSNISSFIPLSHTQ CCCHHHHCCCEEEEECCCCCCCCCCCEECCCEEEEEECCCHHHHHHHHHHHHCCCCHHHH ALGNKFAAVFGTQAQERIFSYINSDTVQDVFPLEIELLNEKFQVNIHKSDDIYVLEAEPQ HHHHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCCCEEECCEEEEEEECCCCEEEEECCCC FDKQILADVYTQTIQFVTQMNNTKSLKDLCALVAEGTREITGYDRVMIYRFDEQYNGEVY HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEE AESCNKDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYQPVPIFTIDDSKDKNLDL EHHCCCCCHHHHCCCCCCCCCCCHHHHHHEECCEEEEEECCCCCEEEEEECCCCCCCCEE SLAILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPAVRLAAKLQ EEEEEECCCCEEHHHHHCCCCCEEEEEEEEECCHHHHHHHEECCCCCCCCHHHHHHHHHC GQFITSQIDIRESNDENINSKKSIEALERLTALDLPLSEDSLNVIIKMPELLALCNSGGV CCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCCE SIMFRNKIYRNGLTPEDEQIEALVERIENKRVAEFYATRKISDDFPELERSSNFAGVIYH EEEEECHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEEEE PLGNSNHIIWYRPETISEIHWAGDPEKSIVKDEKGLHPRNSFNIWKETVKGQSTIWRQYE CCCCCCCEEEECCCCCCCEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCHHEEEEEE INAAAKYAHSLHNNLMMILLSEEEERYRLQSEILRETNSELENINWISTHDLQEPLRKIQ CCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MITSKLLSEKKGDREDPEFDSLERVSKSAARMRGLLQDILKYTRIKNTREAAEKIDLNLI HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEE FEDTLDEISEAITENNAVIECEKLPEVNAIGFLMKQLFLNIIQNSLKYASPDRSPVIKIT EHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE ASQEPVLIKESFNVYCSWVKFSDNGIGFDQKYADSIFKVFTRLHTQQQYSGSGIGLALCK CCCCCEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH KIMQTLGGTITAEGKVDQGTSITIYFPCDSQDTLI HHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]