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The map label for this gene is ydeP [H]

Identifier: 146301555

GI number: 146301555

Start: 4522923

End: 4523285

Strand: Direct

Name: ydeP [H]

Synonym: Fjoh_3816

Alternate gene names: 146301555

Gene position: 4522923-4523285 (Clockwise)

Preceding gene: 146301551

Following gene: 146301556

Centisome position: 74.18

GC content: 36.91

Gene sequence:

>363_bases
ATGTCGAAAGTTAAGATTACAAGCACCAATTTTGAAAATAAGAAAATCTTAGAAGATGAGTGTTCAGAGGTATACGCCGC
AAACATAATTGGCGGCCAATGGTCACTTGTAATTTGTTCCTGGCTGTTACAAGGCAAAATGCGTTTTAGCGAAATAAAAA
AATCTATACCTAATATAACCGAACGTATGCTGACCCTGCAGCTCAGGAAACTGGAACATGATAATATCATAAAGAGAATG
GTATATGCTGCAGTCCCTCCTAAAGTGGAATATGAGTTAACAGAAATTGGCTATGAATTAAAACCGATAATCCAGCAAAT
GGAACAGTGGGGAAAACGACACAAATGTTTACATGCAAAATGA

Upstream 100 bases:

>100_bases
AACTTTAAATTATTAACTAATAGTTCTGCGAAGCTATAACATAAAAGTTATATTAGCTTTATTGACAACCAATTGTAAGG
TACTATCAAAAATGTAAGTT

Downstream 100 bases:

>100_bases
AATAGTCTTAAAATTGAAAATTGGTTAATCAGCCCTGCACTTTGTATAATTTGACCAGTAGTTTCAAAATGCGTTGAACA
CAATTATTCAATTTTAATTG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSKVKITSTNFENKKILEDECSEVYAANIIGGQWSLVICSWLLQGKMRFSEIKKSIPNITERMLTLQLRKLEHDNIIKRM
VYAAVPPKVEYELTEIGYELKPIIQQMEQWGKRHKCLHAK

Sequences:

>Translated_120_residues
MSKVKITSTNFENKKILEDECSEVYAANIIGGQWSLVICSWLLQGKMRFSEIKKSIPNITERMLTLQLRKLEHDNIIKRM
VYAAVPPKVEYELTEIGYELKPIIQQMEQWGKRHKCLHAK
>Mature_119_residues
SKVKITSTNFENKKILEDECSEVYAANIIGGQWSLVICSWLLQGKMRFSEIKKSIPNITERMLTLQLRKLEHDNIIKRMV
YAAVPPKVEYELTEIGYELKPIIQQMEQWGKRHKCLHAK

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=110, Percent_Identity=29.0909090909091, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14050; Mature: 13919

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVKITSTNFENKKILEDECSEVYAANIIGGQWSLVICSWLLQGKMRFSEIKKSIPNIT
CCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
ERMLTLQLRKLEHDNIIKRMVYAAVPPKVEYELTEIGYELKPIIQQMEQWGKRHKCLHAK
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKVKITSTNFENKKILEDECSEVYAANIIGGQWSLVICSWLLQGKMRFSEIKKSIPNIT
CCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
ERMLTLQLRKLEHDNIIKRMVYAAVPPKVEYELTEIGYELKPIIQQMEQWGKRHKCLHAK
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]