BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is yghA [C]

Identifier: 146301488

GI number: 146301488

Start: 4444571

End: 4445335

Strand: Reverse

Name: yghA [C]

Synonym: Fjoh_3747

Alternate gene names: 146301488

Gene position: 4445335-4444571 (Counterclockwise)

Preceding gene: 146301492

Following gene: 146301487

Centisome position: 72.91

GC content: 39.74

Gene sequence:

>765_bases
ATGTCATCACAAAGTAAAATTGCAGTAATAACAGGAGGGAGCCGCGGTCTTGGAAAAGACATGGCTGTAAATCTTGCCAA
AAACGGATTGGATATAGTTTTAACCTATAACACTCAAAAACAAGCAGCAGAAAATGTTGTAAAACAAATTCATGATCTCG
GACAAAAAGCGGCCGCTATAGCATTGGACGTCTCAGATTTTTCCAGTTTTGATTTTTTTGAAAAAAATCTTAAAGACCAA
TTAAACAATTATTTCAACTCAGATGGTATTGATTATCTGATCAATAATGCTGGGTTTATTCACTATGCAAATTTTGATGT
TATCACTGAAACTCAATTTACAGAAATGGAAAATGTACATTTTAGAGGCCCATTTTTCCTTACTCAAAAATTACTGCCTT
TAGTAAGAGCTTACGGAGGAATTGTAAATGTTTCATCTGGACTAACCCGCTTTGCCACGCCGGGATTTGCAGCTTATGCG
GCACTAAAAGGAGCAATGGAGACATTGACAAAATATCAGGCAAAAGAACTTGGCGCAAGAAACATACGAGTAAATGTTAT
TGCTCCGGGGGCTGTTGAAACTGATATTATGGGAGGTGCGGTACGAGATAATGTAGAAATGAACCGATACCTGGCCTCGC
AAACGGCTCTTGGAAGAGTCGGAGTACCCGAGGATATTGGAGGAGTGGTAGCCTTTTTATGCAGTGATGCCGGCGGGTGG
ATTAATGCGCAGCGTATCGAAATTTCGGGAGGTTCAAATTTATGA

Upstream 100 bases:

>100_bases
TCCATGTTACCGTTTTTGGCTACTTAAATTATGGTTTTGGCTAAATTTTCTTTCCTGTATCTGCGCAAATTTGCAGCATA
ATAATACTAAAATAATCATT

Downstream 100 bases:

>100_bases
TCAAGCTTAAAAATAGTTAGCATATTGTTGAAAAACTGAATTTTACAGATAATTAGAAGCATATAAAATGGAAAAAGAAG
ATAATGGAGTTGTAAAAGCT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSSQSKIAVITGGSRGLGKDMAVNLAKNGLDIVLTYNTQKQAAENVVKQIHDLGQKAAAIALDVSDFSSFDFFEKNLKDQ
LNNYFNSDGIDYLINNAGFIHYANFDVITETQFTEMENVHFRGPFFLTQKLLPLVRAYGGIVNVSSGLTRFATPGFAAYA
ALKGAMETLTKYQAKELGARNIRVNVIAPGAVETDIMGGAVRDNVEMNRYLASQTALGRVGVPEDIGGVVAFLCSDAGGW
INAQRIEISGGSNL

Sequences:

>Translated_254_residues
MSSQSKIAVITGGSRGLGKDMAVNLAKNGLDIVLTYNTQKQAAENVVKQIHDLGQKAAAIALDVSDFSSFDFFEKNLKDQ
LNNYFNSDGIDYLINNAGFIHYANFDVITETQFTEMENVHFRGPFFLTQKLLPLVRAYGGIVNVSSGLTRFATPGFAAYA
ALKGAMETLTKYQAKELGARNIRVNVIAPGAVETDIMGGAVRDNVEMNRYLASQTALGRVGVPEDIGGVVAFLCSDAGGW
INAQRIEISGGSNL
>Mature_253_residues
SSQSKIAVITGGSRGLGKDMAVNLAKNGLDIVLTYNTQKQAAENVVKQIHDLGQKAAAIALDVSDFSSFDFFEKNLKDQL
NNYFNSDGIDYLINNAGFIHYANFDVITETQFTEMENVHFRGPFFLTQKLLPLVRAYGGIVNVSSGLTRFATPGFAAYAA
LKGAMETLTKYQAKELGARNIRVNVIAPGAVETDIMGGAVRDNVEMNRYLASQTALGRVGVPEDIGGVVAFLCSDAGGWI
NAQRIEISGGSNL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=28.4, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=27.2, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=28.2945736434109, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=26.4227642276423, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=24.3027888446215, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=24.1379310344828, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=259, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI66933014, Length=185, Percent_Identity=28.1081081081081, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4504505, Length=268, Percent_Identity=26.4925373134328, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI59889578, Length=172, Percent_Identity=28.4883720930233, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=28.2868525896414, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=28.740157480315, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=28.4, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI2367175, Length=267, Percent_Identity=28.8389513108614, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=28.8537549407115, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=29.5719844357977, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082160, Length=264, Percent_Identity=28.030303030303, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786812, Length=178, Percent_Identity=29.7752808988764, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=29.8429319371728, Blast_Score=68, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=29.6442687747036, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=30.4182509505703, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=28.8537549407115, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=30.6201550387597, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=29.8507462686567, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.3492063492063, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=31.3207547169811, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=30.7984790874525, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=30.3703703703704, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.9701492537313, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=29.1187739463602, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=28.2868525896414, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=28.6259541984733, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=269, Percent_Identity=30.1115241635688, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=23.7354085603113, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=27.4074074074074, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=28.4090909090909, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.4511278195489, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=28.4090909090909, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=23.7547892720307, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17558990, Length=217, Percent_Identity=31.7972350230415, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=26.615969581749, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=26.9961977186312, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322795, Length=246, Percent_Identity=28.0487804878049, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=250, Percent_Identity=29.2, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=24.7104247104247, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=31.0756972111554, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI28571526, Length=263, Percent_Identity=31.1787072243346, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=30.7984790874525, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=30.1526717557252, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=29.6, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI23397609, Length=262, Percent_Identity=29.7709923664122, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24584748, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161076933, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644337, Length=213, Percent_Identity=26.2910798122066, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI18859837, Length=242, Percent_Identity=26.4462809917355, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24656154, Length=273, Percent_Identity=31.1355311355311, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19922628, Length=273, Percent_Identity=31.1355311355311, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27356; Mature: 27225

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQSKIAVITGGSRGLGKDMAVNLAKNGLDIVLTYNTQKQAAENVVKQIHDLGQKAAAI
CCCCCEEEEEECCCCCCCCHHHHEEECCCEEEEEEECCHHHHHHHHHHHHHHHCHHHEEE
ALDVSDFSSFDFFEKNLKDQLNNYFNSDGIDYLINNAGFIHYANFDVITETQFTEMENVH
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCEEEECCHHHHHCCEE
FRGPFFLTQKLLPLVRAYGGIVNVSSGLTRFATPGFAAYAALKGAMETLTKYQAKELGAR
ECCCHHHHHHHHHHHHHHCCEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
NIRVNVIAPGAVETDIMGGAVRDNVEMNRYLASQTALGRVGVPEDIGGVVAFLCSDAGGW
EEEEEEEECCCCCHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
INAQRIEISGGSNL
EEEEEEEECCCCCC
>Mature Secondary Structure 
SSQSKIAVITGGSRGLGKDMAVNLAKNGLDIVLTYNTQKQAAENVVKQIHDLGQKAAAI
CCCCEEEEEECCCCCCCCHHHHEEECCCEEEEEEECCHHHHHHHHHHHHHHHCHHHEEE
ALDVSDFSSFDFFEKNLKDQLNNYFNSDGIDYLINNAGFIHYANFDVITETQFTEMENVH
EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCEEEECCHHHHHCCEE
FRGPFFLTQKLLPLVRAYGGIVNVSSGLTRFATPGFAAYAALKGAMETLTKYQAKELGAR
ECCCHHHHHHHHHHHHHHCCEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
NIRVNVIAPGAVETDIMGGAVRDNVEMNRYLASQTALGRVGVPEDIGGVVAFLCSDAGGW
EEEEEEEECCCCCHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
INAQRIEISGGSNL
EEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]