| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is rhbC [H]
Identifier: 146300917
GI number: 146300917
Start: 3775427
End: 3777883
Strand: Direct
Name: rhbC [H]
Synonym: Fjoh_3172
Alternate gene names: 146300917
Gene position: 3775427-3777883 (Clockwise)
Preceding gene: 146300916
Following gene: 146300918
Centisome position: 61.92
GC content: 36.55
Gene sequence:
>2457_bases ATGACTACATCTTCTCCTAAAGAGATTGCTCAGGAAGCAGTCGATATTACGTTTACTATTTTACTTAACTGCTGTGTTCG CGAACTAGGCAACAGCAGTTTTTATGAAGGGGTTCCTAAATACGATCCTGTACTAAAATCATATATGTCTAAGTACAATC ATAAACTTCATTTAAAACTGGATTTTCCTGTTGACAAGGTTGAAGTATATGCGCCTATACGTTACAGATCTGAAACCTTT AGACATTTGTATCATTTTCCGGTAATGGAACGTGATCTTACTACTGAAACCATAAAAGAAATAGATGCAGAACGTCTTTT AGAATTAATTACAACTCATGTAAGACAACAGTATCCGTTGGCAGATTCTAAAAATGTCAAAAAAAGGATGAAGCTGAGTA CAGAGAAAATTGCACAGTTTTTAGAGCATTTTCAAACTTCAGGACAGGAATTTAATAAACCTGAAATGACTTTTATAGAA GCTGAACAATTGTTTCCGGCAGGACATTTACTTCATCCGCTTACAAAAGGACGTGAAGGTTTTACGGAAGCAGAAGTTTT AAAATATGCACCAGAAACCGGCGGACAGTTTCAGCTGTATTATTTTTTAGTACATCCAAATCTGGTTACCGAAAAGTCTG TTGACAATATTTTACCTTCTGATTTTGCAAAAGCTGCAGTAATTGAAGGAAGTAATGGAGATAAAAAAGTACATGATTTA CTGGAAAAATATCCGGAATGGAAAGTAATTCCCGTTCATCCGTGGGAAGCAGCTTACTTTAAATCCCAAATCACATTTGA TACGCTGGTAAAAGAAAATCTGCTTATCGATTTAGGCGAATTTGGAAAAGAATTTACAGCAACCTCATCAGTAAGAACGG TATACAATAAGGATAGTGATTATATGTATAAGTTTTCTCTCCATGTAAAAATTACCGGAGCAGAACGCATCAATCATTAT CATGAACTTTACAGAGGTTATGAGGTATCCCGACTAATGCAGACAGCCTGGGGAGACAATGTAAAGAAATCCTATCCAGA TATTGAATTAATCTGCGATCCGGGCTTTATATCTGTATCGTACAACGGAAATGTACTGGATAGTTTTTCTACCAGTGTGC GATACAATCCGTTTAAAATCAATACAAACGAAAAAGAAAAGAATATCTGTTTATTGGCTTCTTTATGTCAGGACAGCGTA TTAGGAAATCCTTCTAGAATGCAGAATGTGATTCAAGAAGCTTCTCAACAAACCGGATTATCTCTGGAAAAAACTAGTGA GATTTGGTTTAAAAAATATATCGATATCATAGTTGGCGGTGTAGTAAAAATGTTCAATGAACAGGGAATGTTCTGCGAAT GGCATCAGCAAAACACACTTGTACAATTGGATGCGGCGTTCATGCCTGAAAAACTATTTTTCCGTGATAATCAAAGTTTT TTATTCCGAAAATCTTTTGAAGAGCAGCTGAATGAGATTGTACCAGGTTTGTCTGAAAATGGAAAAATGTTTATTCCAGA CGATCGTTTGTATAATCTAATACTTCATTATTTCTGGGTTGGCAATATACTCGCAGTTGTAAATACATTTGGCACCAGCC AGCTTGCAGATGAAAAAAATCTCTTAACTATTTTATACGATACTTTAGAGGCTTTACAAAAAGAAGACGAAAGCGGTCTT GTTACGTTTATTCTTGAAAGCAGACATTGGAAAGTAAAAGGCAATTTACTTACCGCACTAAATGATATTGATTGCGGCGG TAATCCGGCTGGCGTTACGCGTATCAACTTCCCTAATGTTTTACACAAACGCTTTTTTTCAGAACAGTTAATAAATCCAA AAGGAAAAGAATTGGTTTATAACCGCTATTTCCTTAAAGAAGATGTAACGATTAGTTTACGTCCTCTTGATTTAGAAAAT GATCTCGAAATGCTGCATGAATGGTTTCACCGCGATCACGCCAAAGCTAACTGGAAAATGGACTGGCCTCTGCGTGAACT TGAAACGTATTACAGAACCCTGCTGCCAAGTGACGGTTTGTACAGCTATATAGGAATGGCCAACGGAGAACCGACTTTTA ATATCGAAGTGTACTGGCCGACTCGTGATATACTCGGTGATTATTATGATGTGCTTCCTACCGATTATGGAACGCATCAA TTTATTGCGCCGACAGATCCTAAGCAAAAATTTGTATCGCCATCAACACAATGCATGATCGATTATGTCTTTGCACAATC TGAAGTAGGCAGAATGGTTGGTGAAGGTTCTGTAGATTCCAGAGCTTCGATGATGAATAAAGCTTTTCATGGCTTTAAAA TCGATAAGGTTATCGAAATGCCGCATAAAACCTCAAATCTTAATTTCTGCTATCGAGAATGGTATTGGGAAAAATTCCCG CAGAATAAAGACATTATCATAAACTCAGAAGCAGAACATAATCTTATAAACCAATAA
Upstream 100 bases:
>100_bases AAAGTAAACGGCATTTTTTACCTCAAGTTTACCATTTTGAATCCATTAACAACAATCGCACACATCAATAATATCCTTTC AATTATAAAAAAACACGGAA
Downstream 100 bases:
>100_bases TATGGAAGATCGTAAAGTATATTCATTAATAGGCATTGGCATTGGACCTTTTAATTTGGGCTTAGCCGCTTTATTAGAAC CGGTTGATGACGTTTCATCA
Product: IucA/IucC family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 817
Protein sequence:
>818_residues MTTSSPKEIAQEAVDITFTILLNCCVRELGNSSFYEGVPKYDPVLKSYMSKYNHKLHLKLDFPVDKVEVYAPIRYRSETF RHLYHFPVMERDLTTETIKEIDAERLLELITTHVRQQYPLADSKNVKKRMKLSTEKIAQFLEHFQTSGQEFNKPEMTFIE AEQLFPAGHLLHPLTKGREGFTEAEVLKYAPETGGQFQLYYFLVHPNLVTEKSVDNILPSDFAKAAVIEGSNGDKKVHDL LEKYPEWKVIPVHPWEAAYFKSQITFDTLVKENLLIDLGEFGKEFTATSSVRTVYNKDSDYMYKFSLHVKITGAERINHY HELYRGYEVSRLMQTAWGDNVKKSYPDIELICDPGFISVSYNGNVLDSFSTSVRYNPFKINTNEKEKNICLLASLCQDSV LGNPSRMQNVIQEASQQTGLSLEKTSEIWFKKYIDIIVGGVVKMFNEQGMFCEWHQQNTLVQLDAAFMPEKLFFRDNQSF LFRKSFEEQLNEIVPGLSENGKMFIPDDRLYNLILHYFWVGNILAVVNTFGTSQLADEKNLLTILYDTLEALQKEDESGL VTFILESRHWKVKGNLLTALNDIDCGGNPAGVTRINFPNVLHKRFFSEQLINPKGKELVYNRYFLKEDVTISLRPLDLEN DLEMLHEWFHRDHAKANWKMDWPLRELETYYRTLLPSDGLYSYIGMANGEPTFNIEVYWPTRDILGDYYDVLPTDYGTHQ FIAPTDPKQKFVSPSTQCMIDYVFAQSEVGRMVGEGSVDSRASMMNKAFHGFKIDKVIEMPHKTSNLNFCYREWYWEKFP QNKDIIINSEAEHNLINQ
Sequences:
>Translated_818_residues MTTSSPKEIAQEAVDITFTILLNCCVRELGNSSFYEGVPKYDPVLKSYMSKYNHKLHLKLDFPVDKVEVYAPIRYRSETF RHLYHFPVMERDLTTETIKEIDAERLLELITTHVRQQYPLADSKNVKKRMKLSTEKIAQFLEHFQTSGQEFNKPEMTFIE AEQLFPAGHLLHPLTKGREGFTEAEVLKYAPETGGQFQLYYFLVHPNLVTEKSVDNILPSDFAKAAVIEGSNGDKKVHDL LEKYPEWKVIPVHPWEAAYFKSQITFDTLVKENLLIDLGEFGKEFTATSSVRTVYNKDSDYMYKFSLHVKITGAERINHY HELYRGYEVSRLMQTAWGDNVKKSYPDIELICDPGFISVSYNGNVLDSFSTSVRYNPFKINTNEKEKNICLLASLCQDSV LGNPSRMQNVIQEASQQTGLSLEKTSEIWFKKYIDIIVGGVVKMFNEQGMFCEWHQQNTLVQLDAAFMPEKLFFRDNQSF LFRKSFEEQLNEIVPGLSENGKMFIPDDRLYNLILHYFWVGNILAVVNTFGTSQLADEKNLLTILYDTLEALQKEDESGL VTFILESRHWKVKGNLLTALNDIDCGGNPAGVTRINFPNVLHKRFFSEQLINPKGKELVYNRYFLKEDVTISLRPLDLEN DLEMLHEWFHRDHAKANWKMDWPLRELETYYRTLLPSDGLYSYIGMANGEPTFNIEVYWPTRDILGDYYDVLPTDYGTHQ FIAPTDPKQKFVSPSTQCMIDYVFAQSEVGRMVGEGSVDSRASMMNKAFHGFKIDKVIEMPHKTSNLNFCYREWYWEKFP QNKDIIINSEAEHNLINQ >Mature_817_residues TTSSPKEIAQEAVDITFTILLNCCVRELGNSSFYEGVPKYDPVLKSYMSKYNHKLHLKLDFPVDKVEVYAPIRYRSETFR HLYHFPVMERDLTTETIKEIDAERLLELITTHVRQQYPLADSKNVKKRMKLSTEKIAQFLEHFQTSGQEFNKPEMTFIEA EQLFPAGHLLHPLTKGREGFTEAEVLKYAPETGGQFQLYYFLVHPNLVTEKSVDNILPSDFAKAAVIEGSNGDKKVHDLL EKYPEWKVIPVHPWEAAYFKSQITFDTLVKENLLIDLGEFGKEFTATSSVRTVYNKDSDYMYKFSLHVKITGAERINHYH ELYRGYEVSRLMQTAWGDNVKKSYPDIELICDPGFISVSYNGNVLDSFSTSVRYNPFKINTNEKEKNICLLASLCQDSVL GNPSRMQNVIQEASQQTGLSLEKTSEIWFKKYIDIIVGGVVKMFNEQGMFCEWHQQNTLVQLDAAFMPEKLFFRDNQSFL FRKSFEEQLNEIVPGLSENGKMFIPDDRLYNLILHYFWVGNILAVVNTFGTSQLADEKNLLTILYDTLEALQKEDESGLV TFILESRHWKVKGNLLTALNDIDCGGNPAGVTRINFPNVLHKRFFSEQLINPKGKELVYNRYFLKEDVTISLRPLDLEND LEMLHEWFHRDHAKANWKMDWPLRELETYYRTLLPSDGLYSYIGMANGEPTFNIEVYWPTRDILGDYYDVLPTDYGTHQF IAPTDPKQKFVSPSTQCMIDYVFAQSEVGRMVGEGSVDSRASMMNKAFHGFKIDKVIEMPHKTSNLNFCYREWYWEKFPQ NKDIIINSEAEHNLINQ
Specific function: Unknown
COG id: COG4264
COG function: function code Q; Siderophore synthetase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iucA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007310 - InterPro: IPR022770 [H]
Pfam domain/function: PF06276 FhuF; PF04183 IucA_IucC [H]
EC number: NA
Molecular weight: Translated: 94898; Mature: 94767
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSSPKEIAQEAVDITFTILLNCCVRELGNSSFYEGVPKYDPVLKSYMSKYNHKLHLKL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHCCCEEEEEE DFPVDKVEVYAPIRYRSETFRHLYHFPVMERDLTTETIKEIDAERLLELITTHVRQQYPL CCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC ADSKNVKKRMKLSTEKIAQFLEHFQTSGQEFNKPEMTFIEAEQLFPAGHLLHPLTKGREG CCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHCCCCC FTEAEVLKYAPETGGQFQLYYFLVHPNLVTEKSVDNILPSDFAKAAVIEGSNGDKKVHDL CCHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCHHHCEEEEECCCCCHHHHHH LEKYPEWKVIPVHPWEAAYFKSQITFDTLVKENLLIDLGEFGKEFTATSSVRTVYNKDSD HHHCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHEEEHHHCCCHHHCCHHHHHHHCCCCC YMYKFSLHVKITGAERINHYHELYRGYEVSRLMQTAWGDNVKKSYPDIELICDPGFISVS EEEEEEEEEEEECHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCEEEEECCCEEEEE YNGNVLDSFSTSVRYNPFKINTNEKEKNICLLASLCQDSVLGNPSRMQNVIQEASQQTGL ECCCEECCCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC SLEKTSEIWFKKYIDIIVGGVVKMFNEQGMFCEWHQQNTLVQLDAAFMPEKLFFRDNQSF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEHHHCCCHHEEECCCHH LFRKSFEEQLNEIVPGLSENGKMFIPDDRLYNLILHYFWVGNILAVVNTFGTSQLADEKN HHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC LLTILYDTLEALQKEDESGLVTFILESRHWKVKGNLLTALNDIDCGGNPAGVTRINFPNV HHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCEEEEECCCCCCCCCCCEEEECCHHH LHKRFFSEQLINPKGKELVYNRYFLKEDVTISLRPLDLENDLEMLHEWFHRDHAKANWKM HHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEE DWPLRELETYYRTLLPSDGLYSYIGMANGEPTFNIEVYWPTRDILGDYYDVLPTDYGTHQ CCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCE FIAPTDPKQKFVSPSTQCMIDYVFAQSEVGRMVGEGSVDSRASMMNKAFHGFKIDKVIEM EECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHC PHKTSNLNFCYREWYWEKFPQNKDIIINSEAEHNLINQ CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCC >Mature Secondary Structure TTSSPKEIAQEAVDITFTILLNCCVRELGNSSFYEGVPKYDPVLKSYMSKYNHKLHLKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHCCCEEEEEE DFPVDKVEVYAPIRYRSETFRHLYHFPVMERDLTTETIKEIDAERLLELITTHVRQQYPL CCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC ADSKNVKKRMKLSTEKIAQFLEHFQTSGQEFNKPEMTFIEAEQLFPAGHLLHPLTKGREG CCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHCCCCC FTEAEVLKYAPETGGQFQLYYFLVHPNLVTEKSVDNILPSDFAKAAVIEGSNGDKKVHDL CCHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCHHHCEEEEECCCCCHHHHHH LEKYPEWKVIPVHPWEAAYFKSQITFDTLVKENLLIDLGEFGKEFTATSSVRTVYNKDSD HHHCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHEEEHHHCCCHHHCCHHHHHHHCCCCC YMYKFSLHVKITGAERINHYHELYRGYEVSRLMQTAWGDNVKKSYPDIELICDPGFISVS EEEEEEEEEEEECHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCEEEEECCCEEEEE YNGNVLDSFSTSVRYNPFKINTNEKEKNICLLASLCQDSVLGNPSRMQNVIQEASQQTGL ECCCEECCCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC SLEKTSEIWFKKYIDIIVGGVVKMFNEQGMFCEWHQQNTLVQLDAAFMPEKLFFRDNQSF CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEHHHCCCHHEEECCCHH LFRKSFEEQLNEIVPGLSENGKMFIPDDRLYNLILHYFWVGNILAVVNTFGTSQLADEKN HHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC LLTILYDTLEALQKEDESGLVTFILESRHWKVKGNLLTALNDIDCGGNPAGVTRINFPNV HHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCEEEEECCCCCCCCCCCEEEECCHHH LHKRFFSEQLINPKGKELVYNRYFLKEDVTISLRPLDLENDLEMLHEWFHRDHAKANWKM HHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEE DWPLRELETYYRTLLPSDGLYSYIGMANGEPTFNIEVYWPTRDILGDYYDVLPTDYGTHQ CCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCE FIAPTDPKQKFVSPSTQCMIDYVFAQSEVGRMVGEGSVDSRASMMNKAFHGFKIDKVIEM EECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHC PHKTSNLNFCYREWYWEKFPQNKDIIINSEAEHNLINQ CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]