| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is katE [H]
Identifier: 146300885
GI number: 146300885
Start: 3728514
End: 3730655
Strand: Direct
Name: katE [H]
Synonym: Fjoh_3140
Alternate gene names: 146300885
Gene position: 3728514-3730655 (Clockwise)
Preceding gene: 146300877
Following gene: 146300886
Centisome position: 61.15
GC content: 40.48
Gene sequence:
>2142_bases ATGAAAAATTTTCAGGATGAAAAGCAGCGAGATCTGCTGATCAACAAATCAGACGGCACGAATAAATTTCTGACCACCGA TCAGGGTGTCAAGATTAACGACGACAATAATTCTCTTAAAGCAGGAGAAAGAGGTCCTTCCCTACTGGAAGATTTTATTC TTAGAGAAAAAATCACACATTTTGACCACGAAAGAATTCCTGAAAGAATCGTACACGCGAGGGGATCTGGTGCACATGGC TTCTTTGAAGTCACTAATCCAATACCGGAACTGACCAAAGCAGGTTTTCTTCAGGAAAAAGGACTTAAAACGCCTGTTTT TACAAGATTCTCTACAGTTGCAGGATCCCGTGGTTCTACAGATCTGGCACGTGATGTGCGTGGATTTTCGGTTAAATTTT ACACGCAGGAAGGCATCTATGATCTTGTTGGAAATAATGTGCCTGTATTCTTTATTCAGGATGCATCAAAATTTCCAGAC CTTATTCATGCGGTAAAACCAGAACCACACAACGAAATTCCGCAGGCTGCTTCTGCACATGATACTTTCTGGGATTTTAT ATCACTAATGCCAGAATCCATGCACATGATAATGTGGGCGATGTCTGACCGTGCTATTCCGAGAAGCTATCGTATGATGG AAGGTTTTGGAGTGCATACTTTTAGATTAATCAATGAAGCCGGCGAATCTGTGTTTGTAAAATTTCACTGGAAACCTAAA TTAGGAACTCACGCAGTGGCCTGGGATGAAGCACAGAAAATTTCAGGAAAAAATCCCGACTTTCACAGACAGGATCTTTG GGAAGCAATCGAAGCAGGAAACTTTCCGGAATGGGACTTAGGTGTTCAGATCATTCCATCAGAAGATGAAAATAAATATG AATTTGATCTGCTGGATCCTACCAAACTGGTGCCGGAAGAACTTGTGCCTGTAACTATTATTGGAAGAATGGTTTTGAAC AAAAACCCCGATAACTTTTTTGCAGAAACAGAACAAATTGCTTTTCACCCCGGACATGTAGTGCCTGGAATCGATTTTAC AAATGATCCTTTATTACAAGGACGTCTGTTTTCGTATACAGATACACAGCTTTCAAGATTAGGAAGTCCTAATTTTCATG AAATCCCTATTAACCGCAGCGTAGCGCCTGTACATAATAATCAGCGTGACGGACATATGCGTCAGGAAATTAATACCGGA CGTGTCAGTTATCATCCTAATTCTCTTGGAGGCGGCTGTCCGTATCAGGCAAAAATTGCAGAAGGAGGATTTGCCAGTTT TAATGAACGCATCGATGCGCATAAAATAAGAGAAAGAAGTGAAAGTTTTAATGATCACTTCGGACAGGCAAAATTATTCT TCAACAGTCAGACCCCTGCAGAAAAAAGCCATATTGTTAAAGCACTTCGTTTCGAACTCGGAAAAGTCGAAACCACAGCC ATAAGAATAAGAATGCTTGGACTTTTATCACAAGTGGACCAAGAACTGGCCGAAAAAGTAGCCATTGGACTTGGGGCAAC GGTTCCTCCTGTTTTAGAAAAACCGCTGAATCATGGTGTATCTCCTGAAAATGAAAACGGAAAACAGGAATCAACCACAG TGGAGCAGTCTGTAAAATCATCTGATGCATTAAGCATGCTGAAAAACCCAGTTAATTCGCCAACGATTGCATCAAGAAAA GTCGCTATTATTTGTGCCGACGGAGTTTCTGAAGCCGCAGTATCTAACATGAAAAAAGCATTGCTTCAGGAAGATGCAAA AGGCTGTATTGTGGCACCGCATCTAGGAGCTGTAATTTCGGATACTGATGGGGAAATCCATGCAGATTTCAGCTTTCTTA CTGCATCATCTGTATTGTTTGATGCTGTTTATATACCAGATGGAGTTGGCTTGACTGTTTTGGCAGAAAGCGATGAAGTA AATGAATTTTTAAGTGATGCTTACAAACACTGCAAAGTAATTGGAGCCGATGGAAGAGCTGTTTCTATACTAAGTGCCGC AAATTTTGCTTCTAAAATCACAAATGATGATGAGGGGCTTATTGTTACTAAAGAAGCTGCAAGTGAAAAATTTGCAAAAG ATTTTATACAAGCAATGGGAAAACATAGATTTTGGGAACGCGAACCAAATCTGTACAATTAA
Upstream 100 bases:
>100_bases AGAGGTAAATTTGATTGCCTGAAAATGATTTACAGTTTATTGAGGCTGCATTTCTATACTTCTTTTCAGGTTCTATTTTT AACTAATAACATTACCTCAT
Downstream 100 bases:
>100_bases AACTAAATAAGAGAACTATGAAAAATTCAGAAAAACCAAATAATACAAAAGCTGCAGACAAAACTCCCAAAAATGGAATT GTACAGCCTGCAGCCGATGC
Product: catalase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MKNFQDEKQRDLLINKSDGTNKFLTTDQGVKINDDNNSLKAGERGPSLLEDFILREKITHFDHERIPERIVHARGSGAHG FFEVTNPIPELTKAGFLQEKGLKTPVFTRFSTVAGSRGSTDLARDVRGFSVKFYTQEGIYDLVGNNVPVFFIQDASKFPD LIHAVKPEPHNEIPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSYRMMEGFGVHTFRLINEAGESVFVKFHWKPK LGTHAVAWDEAQKISGKNPDFHRQDLWEAIEAGNFPEWDLGVQIIPSEDENKYEFDLLDPTKLVPEELVPVTIIGRMVLN KNPDNFFAETEQIAFHPGHVVPGIDFTNDPLLQGRLFSYTDTQLSRLGSPNFHEIPINRSVAPVHNNQRDGHMRQEINTG RVSYHPNSLGGGCPYQAKIAEGGFASFNERIDAHKIRERSESFNDHFGQAKLFFNSQTPAEKSHIVKALRFELGKVETTA IRIRMLGLLSQVDQELAEKVAIGLGATVPPVLEKPLNHGVSPENENGKQESTTVEQSVKSSDALSMLKNPVNSPTIASRK VAIICADGVSEAAVSNMKKALLQEDAKGCIVAPHLGAVISDTDGEIHADFSFLTASSVLFDAVYIPDGVGLTVLAESDEV NEFLSDAYKHCKVIGADGRAVSILSAANFASKITNDDEGLIVTKEAASEKFAKDFIQAMGKHRFWEREPNLYN
Sequences:
>Translated_713_residues MKNFQDEKQRDLLINKSDGTNKFLTTDQGVKINDDNNSLKAGERGPSLLEDFILREKITHFDHERIPERIVHARGSGAHG FFEVTNPIPELTKAGFLQEKGLKTPVFTRFSTVAGSRGSTDLARDVRGFSVKFYTQEGIYDLVGNNVPVFFIQDASKFPD LIHAVKPEPHNEIPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSYRMMEGFGVHTFRLINEAGESVFVKFHWKPK LGTHAVAWDEAQKISGKNPDFHRQDLWEAIEAGNFPEWDLGVQIIPSEDENKYEFDLLDPTKLVPEELVPVTIIGRMVLN KNPDNFFAETEQIAFHPGHVVPGIDFTNDPLLQGRLFSYTDTQLSRLGSPNFHEIPINRSVAPVHNNQRDGHMRQEINTG RVSYHPNSLGGGCPYQAKIAEGGFASFNERIDAHKIRERSESFNDHFGQAKLFFNSQTPAEKSHIVKALRFELGKVETTA IRIRMLGLLSQVDQELAEKVAIGLGATVPPVLEKPLNHGVSPENENGKQESTTVEQSVKSSDALSMLKNPVNSPTIASRK VAIICADGVSEAAVSNMKKALLQEDAKGCIVAPHLGAVISDTDGEIHADFSFLTASSVLFDAVYIPDGVGLTVLAESDEV NEFLSDAYKHCKVIGADGRAVSILSAANFASKITNDDEGLIVTKEAASEKFAKDFIQAMGKHRFWEREPNLYN >Mature_713_residues MKNFQDEKQRDLLINKSDGTNKFLTTDQGVKINDDNNSLKAGERGPSLLEDFILREKITHFDHERIPERIVHARGSGAHG FFEVTNPIPELTKAGFLQEKGLKTPVFTRFSTVAGSRGSTDLARDVRGFSVKFYTQEGIYDLVGNNVPVFFIQDASKFPD LIHAVKPEPHNEIPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSYRMMEGFGVHTFRLINEAGESVFVKFHWKPK LGTHAVAWDEAQKISGKNPDFHRQDLWEAIEAGNFPEWDLGVQIIPSEDENKYEFDLLDPTKLVPEELVPVTIIGRMVLN KNPDNFFAETEQIAFHPGHVVPGIDFTNDPLLQGRLFSYTDTQLSRLGSPNFHEIPINRSVAPVHNNQRDGHMRQEINTG RVSYHPNSLGGGCPYQAKIAEGGFASFNERIDAHKIRERSESFNDHFGQAKLFFNSQTPAEKSHIVKALRFELGKVETTA IRIRMLGLLSQVDQELAEKVAIGLGATVPPVLEKPLNHGVSPENENGKQESTTVEQSVKSSDALSMLKNPVNSPTIASRK VAIICADGVSEAAVSNMKKALLQEDAKGCIVAPHLGAVISDTDGEIHADFSFLTASSVLFDAVYIPDGVGLTVLAESDEV NEFLSDAYKHCKVIGADGRAVSILSAANFASKITNDDEGLIVTKEAASEKFAKDFIQAMGKHRFWEREPNLYN
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family. HPII subfamily [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=390, Percent_Identity=45.8974358974359, Blast_Score=361, Evalue=1e-99, Organism=Escherichia coli, GI48994891, Length=709, Percent_Identity=52.4682651622003, Blast_Score=737, Evalue=0.0, Organism=Caenorhabditis elegans, GI25151141, Length=461, Percent_Identity=44.0347071583514, Blast_Score=380, Evalue=1e-105, Organism=Caenorhabditis elegans, GI25147792, Length=460, Percent_Identity=43.9130434782609, Blast_Score=379, Evalue=1e-105, Organism=Caenorhabditis elegans, GI71998444, Length=392, Percent_Identity=45.9183673469388, Blast_Score=374, Evalue=1e-103, Organism=Saccharomyces cerevisiae, GI6320462, Length=393, Percent_Identity=43.765903307888, Blast_Score=322, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6321525, Length=336, Percent_Identity=41.6666666666667, Blast_Score=283, Evalue=6e-77, Organism=Drosophila melanogaster, GI17981717, Length=435, Percent_Identity=41.8390804597701, Blast_Score=352, Evalue=4e-97, Organism=Drosophila melanogaster, GI19920968, Length=399, Percent_Identity=40.6015037593985, Blast_Score=338, Evalue=6e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 79249; Mature: 79249
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: PS00437 CATALASE_1 ; PS00438 CATALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNFQDEKQRDLLINKSDGTNKFLTTDQGVKINDDNNSLKAGERGPSLLEDFILREKITH CCCCCCCHHHCEEEECCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH FDHERIPERIVHARGSGAHGFFEVTNPIPELTKAGFLQEKGLKTPVFTRFSTVAGSRGST CCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCHHHCCCCCCHHHHHHHHCCCCCCH DLARDVRGFSVKFYTQEGIYDLVGNNVPVFFIQDASKFPDLIHAVKPEPHNEIPQAASAH HHHHHCCCCEEEEEECCCHHHHHCCCCCEEEECCCHHCHHHHHHCCCCCCCCCCCCCCCH DTFWDFISLMPESMHMIMWAMSDRAIPRSYRMMEGFGVHTFRLINEAGESVFVKFHWKPK HHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHCCCEEEEEEEECCC LGTHAVAWDEAQKISGKNPDFHRQDLWEAIEAGNFPEWDLGVQIIPSEDENKYEFDLLDP CCCCEECCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEECCC TKLVPEELVPVTIIGRMVLNKNPDNFFAETEQIAFHPGHVVPGIDFTNDPLLQGRLFSYT HHHCHHHCCCHHHHHHHHHCCCCCHHHHCCHHEEECCCCCCCCCCCCCCCCCCCEEECCC DTQLSRLGSPNFHEIPINRSVAPVHNNQRDGHMRQEINTGRVSYHPNSLGGGCPYQAKIA HHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCEEEEC EGGFASFNERIDAHKIRERSESFNDHFGQAKLFFNSQTPAEKSHIVKALRFELGKVETTA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEHHH IRIRMLGLLSQVDQELAEKVAIGLGATVPPVLEKPLNHGVSPENENGKQESTTVEQSVKS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH SDALSMLKNPVNSPTIASRKVAIICADGVSEAAVSNMKKALLQEDAKGCIVAPHLGAVIS HHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEE DTDGEIHADFSFLTASSVLFDAVYIPDGVGLTVLAESDEVNEFLSDAYKHCKVIGADGRA CCCCCEEECHHHHHHHHHHHHEEECCCCCCEEEEECCHHHHHHHHHHHHHCEEECCCCCE VSILSAANFASKITNDDEGLIVTKEAASEKFAKDFIQAMGKHRFWEREPNLYN EEEEHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKNFQDEKQRDLLINKSDGTNKFLTTDQGVKINDDNNSLKAGERGPSLLEDFILREKITH CCCCCCCHHHCEEEECCCCCCCEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH FDHERIPERIVHARGSGAHGFFEVTNPIPELTKAGFLQEKGLKTPVFTRFSTVAGSRGST CCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCHHHCCCCCCHHHHHHHHCCCCCCH DLARDVRGFSVKFYTQEGIYDLVGNNVPVFFIQDASKFPDLIHAVKPEPHNEIPQAASAH HHHHHCCCCEEEEEECCCHHHHHCCCCCEEEECCCHHCHHHHHHCCCCCCCCCCCCCCCH DTFWDFISLMPESMHMIMWAMSDRAIPRSYRMMEGFGVHTFRLINEAGESVFVKFHWKPK HHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHCCCEEEEEEEECCC LGTHAVAWDEAQKISGKNPDFHRQDLWEAIEAGNFPEWDLGVQIIPSEDENKYEFDLLDP CCCCEECCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEECCC TKLVPEELVPVTIIGRMVLNKNPDNFFAETEQIAFHPGHVVPGIDFTNDPLLQGRLFSYT HHHCHHHCCCHHHHHHHHHCCCCCHHHHCCHHEEECCCCCCCCCCCCCCCCCCCEEECCC DTQLSRLGSPNFHEIPINRSVAPVHNNQRDGHMRQEINTGRVSYHPNSLGGGCPYQAKIA HHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCEEEEC EGGFASFNERIDAHKIRERSESFNDHFGQAKLFFNSQTPAEKSHIVKALRFELGKVETTA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEHHH IRIRMLGLLSQVDQELAEKVAIGLGATVPPVLEKPLNHGVSPENENGKQESTTVEQSVKS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH SDALSMLKNPVNSPTIASRKVAIICADGVSEAAVSNMKKALLQEDAKGCIVAPHLGAVIS HHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEE DTDGEIHADFSFLTASSVLFDAVYIPDGVGLTVLAESDEVNEFLSDAYKHCKVIGADGRA CCCCCEEECHHHHHHHHHHHHEEECCCCCCEEEEECCHHHHHHHHHHHHHCEEECCCCCE VSILSAANFASKITNDDEGLIVTKEAASEKFAKDFIQAMGKHRFWEREPNLYN EEEEHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA