Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
---|---|
Accession | NC_009441 |
Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146300862
Identifier: 146300862
GI number: 146300862
Start: 3692795
End: 3693937
Strand: Reverse
Name: 146300862
Synonym: Fjoh_3117
Alternate gene names: NA
Gene position: 3693937-3692795 (Counterclockwise)
Preceding gene: 146300863
Following gene: 146300861
Centisome position: 60.59
GC content: 35.0
Gene sequence:
>1143_bases ATGAATAACACTACAAATGGAAGACTAATCTCTTTAGATGTGCTTCGCGGATTTGTTATGTTTTGGATTATGAGCGGTGA ACATATTATTCATGCTCTGGCTAAAGCAGCACCAATTCCTATTTTTATCTGGATGTCTTCACAGCTGCATCATGCGGAAT GGAATGGAATTACATTTTATGATATGATTTTTCCTGTCTTCTTATTTGTTGCCGGAGTTTCTATGCCATTCTCTTTCGAA AAGAAAATGAAATTGGCAGGAGTTAAGGAACCAAAAGATCTGCCTAAAGCCGAAAAGCGTAAAATCTATTTATCGATGCT CAGAAGAACCTGTATTTTACTAGTTTTAGGATTTGTTGTAAATGGATTATTGCGATTTGACGGATTCGATCAAACCCGCT TTGCGAGTGTTTTGGGAAGAATTGGACTGGCGTGGTTTTTTGCAGGAATCATCTATTTGAATTTTGACTTTAAAAAACAA TTGATTTGTTTTTTTGGTATTTTGATTGGGTATTATGCTGCGATGAAATGGATTCCTGTACCCAATTTTGGAGCAGGAGT TTTAACCAAAGAAGGTTCATTGGAAGGTTATATTGACCGCTTGTTTTTACCAGGAAGACTCCATAGTACGGTGTACGATC CGGAAGGAATATTTTCGACCATACCGGCTATTGCAACAGCTTTATTAGGCGTTTTTATCGGAACATTTTTAAAAGCCAAG TGTCCTTTTTCTATAAATATCAAACTGCTTTTAATGGCACTTGCAGCTGTAGTTTTGATTATTGCAGGTTTAATCTGGGA TATTAACTTTCCTATCAATAAACATTTGTGGACCAGTTCTTTCGTATGTTTTGTTGGCGGATTCAGTATTTTATTTTTTG TTTTCTTTTATGCAATAATTGATTTATTGGGTTTTCAAAAATGGGCATTCCCATTGGTTTTAATTGGCTCAAATTCTATT TTGATTTACATCGCTGCAGAAGGTTCTGTCGATTTTAAGCATACAGCAGATTATGTTTTTGGCGGCCTTATACAATACAC GTCAATTATTTGGCAGCCTTTTTTTGCTGCTTTATCTGTAACAATCGTACAGCTTTTGTTACTCTATTTTTTATATAAAA AGAAATGGTTTCTCAAGATTTAG
Upstream 100 bases:
>100_bases TAACCTGTTGCTTTAGTTTTCAGTCTCAGTTTTCAGTCACATTTGGTACTGAAAACTGCGGCTGTGACTGAAGACTAACC CAAAAGCGAATACTAAAAAA
Downstream 100 bases:
>100_bases AAATCTTAATATATTTTTTAAACACATAGAAACATAGAGATTTATGACGCATTAAAATACAAAAGAGAATAATAAGAAAC TAGTTTCTAACACATAGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MNNTTNGRLISLDVLRGFVMFWIMSGEHIIHALAKAAPIPIFIWMSSQLHHAEWNGITFYDMIFPVFLFVAGVSMPFSFE KKMKLAGVKEPKDLPKAEKRKIYLSMLRRTCILLVLGFVVNGLLRFDGFDQTRFASVLGRIGLAWFFAGIIYLNFDFKKQ LICFFGILIGYYAAMKWIPVPNFGAGVLTKEGSLEGYIDRLFLPGRLHSTVYDPEGIFSTIPAIATALLGVFIGTFLKAK CPFSINIKLLLMALAAVVLIIAGLIWDINFPINKHLWTSSFVCFVGGFSILFFVFFYAIIDLLGFQKWAFPLVLIGSNSI LIYIAAEGSVDFKHTADYVFGGLIQYTSIIWQPFFAALSVTIVQLLLLYFLYKKKWFLKI
Sequences:
>Translated_380_residues MNNTTNGRLISLDVLRGFVMFWIMSGEHIIHALAKAAPIPIFIWMSSQLHHAEWNGITFYDMIFPVFLFVAGVSMPFSFE KKMKLAGVKEPKDLPKAEKRKIYLSMLRRTCILLVLGFVVNGLLRFDGFDQTRFASVLGRIGLAWFFAGIIYLNFDFKKQ LICFFGILIGYYAAMKWIPVPNFGAGVLTKEGSLEGYIDRLFLPGRLHSTVYDPEGIFSTIPAIATALLGVFIGTFLKAK CPFSINIKLLLMALAAVVLIIAGLIWDINFPINKHLWTSSFVCFVGGFSILFFVFFYAIIDLLGFQKWAFPLVLIGSNSI LIYIAAEGSVDFKHTADYVFGGLIQYTSIIWQPFFAALSVTIVQLLLLYFLYKKKWFLKI >Mature_380_residues MNNTTNGRLISLDVLRGFVMFWIMSGEHIIHALAKAAPIPIFIWMSSQLHHAEWNGITFYDMIFPVFLFVAGVSMPFSFE KKMKLAGVKEPKDLPKAEKRKIYLSMLRRTCILLVLGFVVNGLLRFDGFDQTRFASVLGRIGLAWFFAGIIYLNFDFKKQ LICFFGILIGYYAAMKWIPVPNFGAGVLTKEGSLEGYIDRLFLPGRLHSTVYDPEGIFSTIPAIATALLGVFIGTFLKAK CPFSINIKLLLMALAAVVLIIAGLIWDINFPINKHLWTSSFVCFVGGFSILFFVFFYAIIDLLGFQKWAFPLVLIGSNSI LIYIAAEGSVDFKHTADYVFGGLIQYTSIIWQPFFAALSVTIVQLLLLYFLYKKKWFLKI
Specific function: Unknown
COG id: COG4299
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI150378452, Length=384, Percent_Identity=24.7395833333333, Blast_Score=90, Evalue=3e-18, Organism=Drosophila melanogaster, GI24639786, Length=374, Percent_Identity=26.2032085561497, Blast_Score=94, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42989; Mature: 42989
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNTTNGRLISLDVLRGFVMFWIMSGEHIIHALAKAAPIPIFIWMSSQLHHAEWNGITFY CCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH DMIFPVFLFVAGVSMPFSFEKKMKLAGVKEPKDLPKAEKRKIYLSMLRRTCILLVLGFVV HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NGLLRFDGFDQTRFASVLGRIGLAWFFAGIIYLNFDFKKQLICFFGILIGYYAAMKWIPV HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCCC PNFGAGVLTKEGSLEGYIDRLFLPGRLHSTVYDPEGIFSTIPAIATALLGVFIGTFLKAK CCCCCCCEECCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC CPFSINIKLLLMALAAVVLIIAGLIWDINFPINKHLWTSSFVCFVGGFSILFFVFFYAII CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DLLGFQKWAFPLVLIGSNSILIYIAAEGSVDFKHTADYVFGGLIQYTSIIWQPFFAALSV HHHCCHHHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIVQLLLLYFLYKKKWFLKI HHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MNNTTNGRLISLDVLRGFVMFWIMSGEHIIHALAKAAPIPIFIWMSSQLHHAEWNGITFY CCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH DMIFPVFLFVAGVSMPFSFEKKMKLAGVKEPKDLPKAEKRKIYLSMLRRTCILLVLGFVV HHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NGLLRFDGFDQTRFASVLGRIGLAWFFAGIIYLNFDFKKQLICFFGILIGYYAAMKWIPV HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCCC PNFGAGVLTKEGSLEGYIDRLFLPGRLHSTVYDPEGIFSTIPAIATALLGVFIGTFLKAK CCCCCCCEECCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC CPFSINIKLLLMALAAVVLIIAGLIWDINFPINKHLWTSSFVCFVGGFSILFFVFFYAII CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DLLGFQKWAFPLVLIGSNSILIYIAAEGSVDFKHTADYVFGGLIQYTSIIWQPFFAALSV HHHCCHHHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIVQLLLLYFLYKKKWFLKI HHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA