| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300787
Identifier: 146300787
GI number: 146300787
Start: 3597020
End: 3598531
Strand: Reverse
Name: 146300787
Synonym: Fjoh_3038
Alternate gene names: NA
Gene position: 3598531-3597020 (Counterclockwise)
Preceding gene: 146300789
Following gene: 146300783
Centisome position: 59.02
GC content: 36.9
Gene sequence:
>1512_bases ATGAAAATATCAGATTCTTTTAAAAGTGCAATAGTTGAAGCCATCTGCCTGCTTTATATACTTCTTTTCGTCTATGCTTC TGTAAGCAAAATTATTGATTTTGAGAATTTTCAGGTGCAGCTTGGACAATCTCCCCTTCTTAGTGCATTTGCTGTTCCTG TTTCCTGGGGAGTTATTATAAGTGAATTAGGAATTGCTCTAATGCTGGTTTTTCCTGGAAGCAGGAAAATCGGGCTTTAC GCAGGTTTCTGTCTGATGACGATGTTCAGTGCATATATTTTTATAATTCTTAATTACAGTTCTTTTGTGCCATGTTCCTG TGGCGGGATTTTGGAAAAAATGAGCTGGGGGACGCATTTGGCATTCAATATCGTTTTTGTTCTGCTTGCCGCCTTGGCTA TTACAGTATATCCCGACCATAACAGGTTGTTTTCAAAAATTTCCAATTCAGTAATTCTTTCTTTGATCTTTATTTCAGGA AGTGGTGCAGTAGCAGTTCTGTTTCTTGCTTCTGAAAAAATTATGCATTATCAGAACCCGTTTATAAGACGCTACCCGCA TCATCCTGTTTCAATAGAAAAAACCATAGATTTAAAATACAACTCCTATTATTTCGCAGGCTACGGAGAGGGAAATCTGT ATCTCGGAAATTCAACGGCACCTTTCAGCCTTCTTTCCATTAGTAGCCAGATGGAACAGAAGAAAATAAGAATAAGGCTA GACAGGGAACGTTTTGACTTCAAATCGGTCAGAATAGCAGTCCGCCCTCCATTCTTTTATGTTTTGGACGGGGTTGTCCC TGTCATATTCCAGGGTAAAACATCTGAGTGGAAAGCCCTGCAATTGGCCACCACCCCTCCGTATTTTAACATTGCATATC CTGCCGACAGTACTTTGGTTGTTTTTAGGGGAATGAGTTCAAAAACGCGGAATAATGTCATAGGAACTTACCGATGGGGA AAAAACAGTAGAACAATAATAAGTCCTCATTTGCTCCAGAAGCAAATCGACGGAATTTTTGATACGGACGGCATGCTGCA TTTCAGTCAAGAGTTGAATAGCATTATATACTTGTACTCATATAGAAATGAATATTTAGTAGCAGATAGGGAAGGAAAAT TAAACTTTAGAAGTCATACTATCGACACCAATTCGCATGCCAAAATAAAAGTTGCTTATTTAAAAGGAAAATCAGAACGA GTAATGTCTGCTCCAGCAATTACAGTAAACAGATCAAGCAGTGTAAATGAAACTTTTCTATATGTAAACTCAAATGTCCC AGGCAGATTTGAAGGAAGACAAAAATGGGAATTGCAGTCTGTTATTGACGTCTACGATTTAAAAAAAAGGTCTTACGTAT TTAGTTTTACAATTGATCGCTTGAATGGTAAAAAGCTTCGCAACTTTTATGTTGTTCATGGTAAAATCTTTGTTTTAATA GGTACAAAACTAGCTATCTATAAATTTAGTAATGAAGTAAACAAAAAATATTTAAAAGCTCCTGAAGCTTAA
Upstream 100 bases:
>100_bases TTTGGCACTTTGAAATTATACTGCAAACTAAATCGTTTTCCATCGGCAGAAAAACTGTCTATTGACGAAATTAATGATGT AGTAGAAAAAAATATAGGAC
Downstream 100 bases:
>100_bases TTAAAAATATACTTGCGCATGTATCAGGAATTAGATCGAAAACCTGTAAAAAAAAGTAGATCATTTAACTTTTTAAAAAA TAATACGTTATGAAAACCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MKISDSFKSAIVEAICLLYILLFVYASVSKIIDFENFQVQLGQSPLLSAFAVPVSWGVIISELGIALMLVFPGSRKIGLY AGFCLMTMFSAYIFIILNYSSFVPCSCGGILEKMSWGTHLAFNIVFVLLAALAITVYPDHNRLFSKISNSVILSLIFISG SGAVAVLFLASEKIMHYQNPFIRRYPHHPVSIEKTIDLKYNSYYFAGYGEGNLYLGNSTAPFSLLSISSQMEQKKIRIRL DRERFDFKSVRIAVRPPFFYVLDGVVPVIFQGKTSEWKALQLATTPPYFNIAYPADSTLVVFRGMSSKTRNNVIGTYRWG KNSRTIISPHLLQKQIDGIFDTDGMLHFSQELNSIIYLYSYRNEYLVADREGKLNFRSHTIDTNSHAKIKVAYLKGKSER VMSAPAITVNRSSSVNETFLYVNSNVPGRFEGRQKWELQSVIDVYDLKKRSYVFSFTIDRLNGKKLRNFYVVHGKIFVLI GTKLAIYKFSNEVNKKYLKAPEA
Sequences:
>Translated_503_residues MKISDSFKSAIVEAICLLYILLFVYASVSKIIDFENFQVQLGQSPLLSAFAVPVSWGVIISELGIALMLVFPGSRKIGLY AGFCLMTMFSAYIFIILNYSSFVPCSCGGILEKMSWGTHLAFNIVFVLLAALAITVYPDHNRLFSKISNSVILSLIFISG SGAVAVLFLASEKIMHYQNPFIRRYPHHPVSIEKTIDLKYNSYYFAGYGEGNLYLGNSTAPFSLLSISSQMEQKKIRIRL DRERFDFKSVRIAVRPPFFYVLDGVVPVIFQGKTSEWKALQLATTPPYFNIAYPADSTLVVFRGMSSKTRNNVIGTYRWG KNSRTIISPHLLQKQIDGIFDTDGMLHFSQELNSIIYLYSYRNEYLVADREGKLNFRSHTIDTNSHAKIKVAYLKGKSER VMSAPAITVNRSSSVNETFLYVNSNVPGRFEGRQKWELQSVIDVYDLKKRSYVFSFTIDRLNGKKLRNFYVVHGKIFVLI GTKLAIYKFSNEVNKKYLKAPEA >Mature_503_residues MKISDSFKSAIVEAICLLYILLFVYASVSKIIDFENFQVQLGQSPLLSAFAVPVSWGVIISELGIALMLVFPGSRKIGLY AGFCLMTMFSAYIFIILNYSSFVPCSCGGILEKMSWGTHLAFNIVFVLLAALAITVYPDHNRLFSKISNSVILSLIFISG SGAVAVLFLASEKIMHYQNPFIRRYPHHPVSIEKTIDLKYNSYYFAGYGEGNLYLGNSTAPFSLLSISSQMEQKKIRIRL DRERFDFKSVRIAVRPPFFYVLDGVVPVIFQGKTSEWKALQLATTPPYFNIAYPADSTLVVFRGMSSKTRNNVIGTYRWG KNSRTIISPHLLQKQIDGIFDTDGMLHFSQELNSIIYLYSYRNEYLVADREGKLNFRSHTIDTNSHAKIKVAYLKGKSER VMSAPAITVNRSSSVNETFLYVNSNVPGRFEGRQKWELQSVIDVYDLKKRSYVFSFTIDRLNGKKLRNFYVVHGKIFVLI GTKLAIYKFSNEVNKKYLKAPEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57054; Mature: 57054
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISDSFKSAIVEAICLLYILLFVYASVSKIIDFENFQVQLGQSPLLSAFAVPVSWGVII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH SELGIALMLVFPGSRKIGLYAGFCLMTMFSAYIFIILNYSSFVPCSCGGILEKMSWGTHL HHCCEEEEEEECCCCEEHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHCCCCHH AFNIVFVLLAALAITVYPDHNRLFSKISNSVILSLIFISGSGAVAVLFLASEKIMHYQNP HHHHHHHHHHHHHEEEECCHHHHHHHHCCCEEEEEEEEECCCCEEEEEEECHHHHHHCCC FIRRYPHHPVSIEKTIDLKYNSYYFAGYGEGNLYLGNSTAPFSLLSISSQMEQKKIRIRL HHHCCCCCCCEEEEEEEEEECCEEEEEECCCEEEECCCCCCCCEEHHHHHHHCCEEEEEE DRERFDFKSVRIAVRPPFFYVLDGVVPVIFQGKTSEWKALQLATTPPYFNIAYPADSTLV CCCCCCEEEEEEEECCCHHEECCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCCCEEE VFRGMSSKTRNNVIGTYRWGKNSRTIISPHLLQKQIDGIFDTDGMLHFSQELNSIIYLYS EEECCCCCCCCCEEEEEEECCCCCEEECHHHHHHHHCCCCCCCCCEEEHHHCCCEEEEEE YRNEYLVADREGKLNFRSHTIDTNSHAKIKVAYLKGKSERVMSAPAITVNRSSSVNETFL ECCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCEEEEECCCCCCEEEE YVNSNVPGRFEGRQKWELQSVIDVYDLKKRSYVFSFTIDRLNGKKLRNFYVVHGKIFVLI EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEEEE GTKLAIYKFSNEVNKKYLKAPEA ECEEEEEEECCHHHHHHHCCCCC >Mature Secondary Structure MKISDSFKSAIVEAICLLYILLFVYASVSKIIDFENFQVQLGQSPLLSAFAVPVSWGVII CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH SELGIALMLVFPGSRKIGLYAGFCLMTMFSAYIFIILNYSSFVPCSCGGILEKMSWGTHL HHCCEEEEEEECCCCEEHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHCCCCHH AFNIVFVLLAALAITVYPDHNRLFSKISNSVILSLIFISGSGAVAVLFLASEKIMHYQNP HHHHHHHHHHHHHEEEECCHHHHHHHHCCCEEEEEEEEECCCCEEEEEEECHHHHHHCCC FIRRYPHHPVSIEKTIDLKYNSYYFAGYGEGNLYLGNSTAPFSLLSISSQMEQKKIRIRL HHHCCCCCCCEEEEEEEEEECCEEEEEECCCEEEECCCCCCCCEEHHHHHHHCCEEEEEE DRERFDFKSVRIAVRPPFFYVLDGVVPVIFQGKTSEWKALQLATTPPYFNIAYPADSTLV CCCCCCEEEEEEEECCCHHEECCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCCCEEE VFRGMSSKTRNNVIGTYRWGKNSRTIISPHLLQKQIDGIFDTDGMLHFSQELNSIIYLYS EEECCCCCCCCCEEEEEEECCCCCEEECHHHHHHHHCCCCCCCCCEEEHHHCCCEEEEEE YRNEYLVADREGKLNFRSHTIDTNSHAKIKVAYLKGKSERVMSAPAITVNRSSSVNETFL ECCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCEEEEECCCCCCEEEE YVNSNVPGRFEGRQKWELQSVIDVYDLKKRSYVFSFTIDRLNGKKLRNFYVVHGKIFVLI EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEEEE GTKLAIYKFSNEVNKKYLKAPEA ECEEEEEEECCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA