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The map label for this gene is 146300741

Identifier: 146300741

GI number: 146300741

Start: 3539880

End: 3540680

Strand: Direct

Name: 146300741

Synonym: Fjoh_2992

Alternate gene names: NA

Gene position: 3539880-3540680 (Clockwise)

Preceding gene: 146300740

Following gene: 146300742

Centisome position: 58.06

GC content: 35.96

Gene sequence:

>801_bases
TTGAAAAAGACCATATCCATAAAAACCAAAATTGAAGCGGCAGCATTATTAAAAGTTGCACCGTTCAGAAAAGAAATTCG
CAAGACTGAACCGCACAAACACAACAGCTATTTTGAAATTATTTATTTAAGAGAAGGAAGCGGCTTTCACACCATAGACC
ATACTTCATTTTCAATAAAGCCGCCAACTGTATTTTTTGTCCGTAAAGAGCAGGTGCATCATTGGGATATGACCGATACA
CCAGACGGTTTTGTACTGCTCTTAAAGAAGAGGTTTGTCGACCAGTCGATGGACAGTGAGCTTAAAAGTCTTTTATCTAA
ACTAAGCGGCTTAAGCTGCATTCATCTGAAAGAAACAGAAAATATAGATACTTTATTCCAACTGCTCACTAGAGAAAAAG
ATTTTACCGTTACCGAAGGATTACTAAAAGCACTATTTGCTAAAATATTGATTGCGGCAAAACCTTTGATAATTAAAACC
AGTAAAACGGATAATATAATTGCAGTATTCAGGGAACTACTCAACCAAACAAATGATCTGCGAAATAATGTTGCCTACTA
TGCAGAAAAACTTTACACTACACCACAAAATCTCAATGCAATTTGCCGTAAAACATTAGACCAGTCGGCAGCAGAAGTAA
TTGCAGTGCATATCATTAGCGAAGCAAAAAGACAATTGATTTATACAGAAAGTAGTGTTTCTGAAATTGCCTATAGTTTG
AATTTTAATGACACTTCCCATTTTGTTAAGTATTTTAAACGCCACACAGGTGTTACGCCACAAACCTTCCGAAATACCTA
A

Upstream 100 bases:

>100_bases
GAAGTGCCCGTATTGATACTTTTAGTCAAGGCAAGTTTATGGTTGAACAAGAAATATTATAGTTAATTTTATAAACATCA
AATATAGAAGTTATAACGGA

Downstream 100 bases:

>100_bases
AATACACTACGTTATTTTCAAATATACCGTTCTAAATGATTTGTATTGTACGAAATTTGTGTAATGTAAAGTTGTAAACA
ATGAGATATTTAACATCTAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator PobR; Helix-Turn-Helix Domain-Containing Protein; AraC-Type Transcription Regulator; Transcriptional Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Transcriptional Regulator Protein; AraC Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; AraC Family Transcription Regulator Protein; AraC/XylS Family Transcription Factor

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKKTISIKTKIEAAALLKVAPFRKEIRKTEPHKHNSYFEIIYLREGSGFHTIDHTSFSIKPPTVFFVRKEQVHHWDMTDT
PDGFVLLLKKRFVDQSMDSELKSLLSKLSGLSCIHLKETENIDTLFQLLTREKDFTVTEGLLKALFAKILIAAKPLIIKT
SKTDNIIAVFRELLNQTNDLRNNVAYYAEKLYTTPQNLNAICRKTLDQSAAEVIAVHIISEAKRQLIYTESSVSEIAYSL
NFNDTSHFVKYFKRHTGVTPQTFRNT

Sequences:

>Translated_266_residues
MKKTISIKTKIEAAALLKVAPFRKEIRKTEPHKHNSYFEIIYLREGSGFHTIDHTSFSIKPPTVFFVRKEQVHHWDMTDT
PDGFVLLLKKRFVDQSMDSELKSLLSKLSGLSCIHLKETENIDTLFQLLTREKDFTVTEGLLKALFAKILIAAKPLIIKT
SKTDNIIAVFRELLNQTNDLRNNVAYYAEKLYTTPQNLNAICRKTLDQSAAEVIAVHIISEAKRQLIYTESSVSEIAYSL
NFNDTSHFVKYFKRHTGVTPQTFRNT
>Mature_266_residues
MKKTISIKTKIEAAALLKVAPFRKEIRKTEPHKHNSYFEIIYLREGSGFHTIDHTSFSIKPPTVFFVRKEQVHHWDMTDT
PDGFVLLLKKRFVDQSMDSELKSLLSKLSGLSCIHLKETENIDTLFQLLTREKDFTVTEGLLKALFAKILIAAKPLIIKT
SKTDNIIAVFRELLNQTNDLRNNVAYYAEKLYTTPQNLNAICRKTLDQSAAEVIAVHIISEAKRQLIYTESSVSEIAYSL
NFNDTSHFVKYFKRHTGVTPQTFRNT

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30569; Mature: 30569

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTISIKTKIEAAALLKVAPFRKEIRKTEPHKHNSYFEIIYLREGSGFHTIDHTSFSIK
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCEEEEC
PPTVFFVRKEQVHHWDMTDTPDGFVLLLKKRFVDQSMDSELKSLLSKLSGLSCIHLKETE
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCC
NIDTLFQLLTREKDFTVTEGLLKALFAKILIAAKPLIIKTSKTDNIIAVFRELLNQTNDL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
RNNVAYYAEKLYTTPQNLNAICRKTLDQSAAEVIAVHIISEAKRQLIYTESSVSEIAYSL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHEEEC
NFNDTSHFVKYFKRHTGVTPQTFRNT
CCCCHHHHHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure
MKKTISIKTKIEAAALLKVAPFRKEIRKTEPHKHNSYFEIIYLREGSGFHTIDHTSFSIK
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCEEEEC
PPTVFFVRKEQVHHWDMTDTPDGFVLLLKKRFVDQSMDSELKSLLSKLSGLSCIHLKETE
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCC
NIDTLFQLLTREKDFTVTEGLLKALFAKILIAAKPLIIKTSKTDNIIAVFRELLNQTNDL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
RNNVAYYAEKLYTTPQNLNAICRKTLDQSAAEVIAVHIISEAKRQLIYTESSVSEIAYSL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHEEEC
NFNDTSHFVKYFKRHTGVTPQTFRNT
CCCCHHHHHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA