| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300718
Identifier: 146300718
GI number: 146300718
Start: 3520913
End: 3521737
Strand: Reverse
Name: 146300718
Synonym: Fjoh_2969
Alternate gene names: NA
Gene position: 3521737-3520913 (Counterclockwise)
Preceding gene: 146300723
Following gene: 146300716
Centisome position: 57.76
GC content: 32.73
Gene sequence:
>825_bases ATGAGAACTATTAAATTAGGAGTAAAATCCAATGAAGTTTATTACTTAAATGAGCTTCTCGTAAAATTAGGGTACAGCAT TGTAGTTTCTGATAGTTTTGGAACGGCAACAGACAAGTCAGTCAGAGATTTTCAATTAAAAAACAATTTGGTTGTAGATG GAGTAGTGGGTTTGAAAACGTGGACAGTACTTTTAGAAAAAAGTAAAAATAGTAATACGTCAAATTCTAAGCTGCTTTCA GAGCAAAATCTTATAGATTTCGCTAAACAGTTTAATCTTGAATTGGCTGTTGTAAAAGCTGTAAATGAAGTTGAAAGCAA TGGAAAAGGTTTTTTAGTCGACGGAAGACCAAAGATTTTATTCGAAGGTCATGTTTTTTGGAAACAACTGGAAAATAGAA ATATAGACCCGCATATCTATGTTAACACTTTAAATGAGAATATTCTATTTGAAAAGTATAACAGAAAATATTATGTGGGC GGAGCCGAAGAATACAACCGTTTAGAAAAAGCAGCAAGTTTAGGCGCAGATAAAAAATTTAGAGATGCCGCAAATTGTTC GGCTTCATGGGGACTTTTCCAAATAATGGGCTTCAATGCAGTGCCAATTGGTTATCAAAGTATTGATGAGTTTGTTATTA AAATGAACGAGAACGAAGGCGAACACTTAAAAGCTTTTGGAATGTTTTTAAAGAAAAATAATTTGATAGAAACATTACGA AGTAAAAACTGGGCAGTATTTGCTTTAAAATACAATGGCCCGGCTTATAAAACCAACAAATATGACGAAAAACTGCAGCG TGCTTATTTGAAATATTCTAAATGA
Upstream 100 bases:
>100_bases GAAATCAAGAGCTTCCTGGGTAACAAAACTTAAATTTTACAGCTCTTAATCTAAAAGCCTAAATGAATTTCAGTAAAAAA ATAATTCTAAATAAAAAGGC
Downstream 100 bases:
>100_bases AACAAAATAAAACCCGACAGGTTTTAAAATCTGTCGGGTTTGAATATTTATATAGATAAAACTATTATCTTAAGCTTGCG CCTAATTCAGTTTCAAAGGT
Product: peptidoglycan binding domain-containing protein
Products: NA
Alternate protein names: Bacteriophage-Acquired Protein; Phage-Related Cell Wall Hydrolase; Gp43 Bacteriophage-Acquired Protein; Lytic Transglycosylase Catalytic; LysM Domain Protein; Phage-Like Protein; DNA-Directed RNA Polymerase Beta Chain; Lytic Phage PhiCTX_orf
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MRTIKLGVKSNEVYYLNELLVKLGYSIVVSDSFGTATDKSVRDFQLKNNLVVDGVVGLKTWTVLLEKSKNSNTSNSKLLS EQNLIDFAKQFNLELAVVKAVNEVESNGKGFLVDGRPKILFEGHVFWKQLENRNIDPHIYVNTLNENILFEKYNRKYYVG GAEEYNRLEKAASLGADKKFRDAANCSASWGLFQIMGFNAVPIGYQSIDEFVIKMNENEGEHLKAFGMFLKKNNLIETLR SKNWAVFALKYNGPAYKTNKYDEKLQRAYLKYSK
Sequences:
>Translated_274_residues MRTIKLGVKSNEVYYLNELLVKLGYSIVVSDSFGTATDKSVRDFQLKNNLVVDGVVGLKTWTVLLEKSKNSNTSNSKLLS EQNLIDFAKQFNLELAVVKAVNEVESNGKGFLVDGRPKILFEGHVFWKQLENRNIDPHIYVNTLNENILFEKYNRKYYVG GAEEYNRLEKAASLGADKKFRDAANCSASWGLFQIMGFNAVPIGYQSIDEFVIKMNENEGEHLKAFGMFLKKNNLIETLR SKNWAVFALKYNGPAYKTNKYDEKLQRAYLKYSK >Mature_274_residues MRTIKLGVKSNEVYYLNELLVKLGYSIVVSDSFGTATDKSVRDFQLKNNLVVDGVVGLKTWTVLLEKSKNSNTSNSKLLS EQNLIDFAKQFNLELAVVKAVNEVESNGKGFLVDGRPKILFEGHVFWKQLENRNIDPHIYVNTLNENILFEKYNRKYYVG GAEEYNRLEKAASLGADKKFRDAANCSASWGLFQIMGFNAVPIGYQSIDEFVIKMNENEGEHLKAFGMFLKKNNLIETLR SKNWAVFALKYNGPAYKTNKYDEKLQRAYLKYSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31319; Mature: 31319
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIKLGVKSNEVYYLNELLVKLGYSIVVSDSFGTATDKSVRDFQLKNNLVVDGVVGLKT CCEEEEECCCCCEEEHHHHHHHCCCEEEEECCCCCCCCCCHHEEEECCCEEEECEEHHHE WTVLLEKSKNSNTSNSKLLSEQNLIDFAKQFNLELAVVKAVNEVESNGKGFLVDGRPKIL EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCEEEEECCCEEE FEGHVFWKQLENRNIDPHIYVNTLNENILFEKYNRKYYVGGAEEYNRLEKAASLGADKKF EECHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCEEEECCHHHHHHHHHHHHCCCCCCH RDAANCSASWGLFQIMGFNAVPIGYQSIDEFVIKMNENEGEHLKAFGMFLKKNNLIETLR HHHCCCCCCCCEEEEECCCCCCCCHHHHHEEEEEECCCCCCHHHHHHHHHHCCHHHHHHH SKNWAVFALKYNGPAYKTNKYDEKLQRAYLKYSK CCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MRTIKLGVKSNEVYYLNELLVKLGYSIVVSDSFGTATDKSVRDFQLKNNLVVDGVVGLKT CCEEEEECCCCCEEEHHHHHHHCCCEEEEECCCCCCCCCCHHEEEECCCEEEECEEHHHE WTVLLEKSKNSNTSNSKLLSEQNLIDFAKQFNLELAVVKAVNEVESNGKGFLVDGRPKIL EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCEEEEECCCEEE FEGHVFWKQLENRNIDPHIYVNTLNENILFEKYNRKYYVGGAEEYNRLEKAASLGADKKF EECHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCEEEECCHHHHHHHHHHHHCCCCCCH RDAANCSASWGLFQIMGFNAVPIGYQSIDEFVIKMNENEGEHLKAFGMFLKKNNLIETLR HHHCCCCCCCCEEEEECCCCCCCCHHHHHEEEEEECCCCCCHHHHHHHHHHCCHHHHHHH SKNWAVFALKYNGPAYKTNKYDEKLQRAYLKYSK CCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA