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The map label for this gene is aer [H]

Identifier: 146300685

GI number: 146300685

Start: 3479728

End: 3480333

Strand: Reverse

Name: aer [H]

Synonym: Fjoh_2936

Alternate gene names: 146300685

Gene position: 3480333-3479728 (Counterclockwise)

Preceding gene: 146300686

Following gene: 146300683

Centisome position: 57.08

GC content: 34.65

Gene sequence:

>606_bases
ATGGACACTAGATTTACCCGCCCAACTCCATCAGACCGAGAAGTCGATTGGAATAAAAATAAAGTATTACTAAGTAAAAC
AGATAAGCACGGAACAATTCTATATGCCAACGAAGATTTTATAGATGTTTCCGGATATGATGAATTTGAACTTATTGGAC
AGCCTCACAGTATTGTGAGGCATCCTGATATGCCAAAAGTAATTTTTAAGTTCTTGTGGGATAGCATTAAATCAAGTGAA
AACATTCATGTAATTATTAAAAATATGGCCAAAACAGGCCGTTATTACTGGGTTGTAACCGACTTTAAAATTGTAGCCGA
TACAAATGGAGACGGTGATATAGTTGGATATTTCGGAACCCGAAAATCTGTTCCTGAACCTATAATTACAAAATTCATTG
AACCTTTGTATAAAAAACTGCTGCAAATTGAGCAGACCAGCGGGATAATAGCCTCTGAGGAATATTTGGTTGGTTTTTTA
GAAGAACGCAAGAAAACCTATATGGAATATGTAGATCATTTAATTGCGACCGGAAAAGACGATAAAAATAAAGTAAGTAA
GGGTTTATTCAGCGGATTATTTGATAAAACACCTCCTAAAAAATAA

Upstream 100 bases:

>100_bases
GTAAAATCTACTAATACCAGACATTAAAATAATTAAAAACCAACTTCCAAAAAAATACACGCAGCACTACCATTGTTTGT
TAATTATTAATAGAAAATTT

Downstream 100 bases:

>100_bases
TAAATCACAAAAAGTTATACTTCATTGTGTCGGCAATATTCAAAAACAAATTTGCCCCCAACAAATCTAAATCACCTGAA
TATTTTAACTTACTAAAGTT

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MDTRFTRPTPSDREVDWNKNKVLLSKTDKHGTILYANEDFIDVSGYDEFELIGQPHSIVRHPDMPKVIFKFLWDSIKSSE
NIHVIIKNMAKTGRYYWVVTDFKIVADTNGDGDIVGYFGTRKSVPEPIITKFIEPLYKKLLQIEQTSGIIASEEYLVGFL
EERKKTYMEYVDHLIATGKDDKNKVSKGLFSGLFDKTPPKK

Sequences:

>Translated_201_residues
MDTRFTRPTPSDREVDWNKNKVLLSKTDKHGTILYANEDFIDVSGYDEFELIGQPHSIVRHPDMPKVIFKFLWDSIKSSE
NIHVIIKNMAKTGRYYWVVTDFKIVADTNGDGDIVGYFGTRKSVPEPIITKFIEPLYKKLLQIEQTSGIIASEEYLVGFL
EERKKTYMEYVDHLIATGKDDKNKVSKGLFSGLFDKTPPKK
>Mature_201_residues
MDTRFTRPTPSDREVDWNKNKVLLSKTDKHGTILYANEDFIDVSGYDEFELIGQPHSIVRHPDMPKVIFKFLWDSIKSSE
NIHVIIKNMAKTGRYYWVVTDFKIVADTNGDGDIVGYFGTRKSVPEPIITKFIEPLYKKLLQIEQTSGIIASEEYLVGFL
EERKKTYMEYVDHLIATGKDDKNKVSKGLFSGLFDKTPPKK

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=118, Percent_Identity=42.3728813559322, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 23159; Mature: 23159

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRFTRPTPSDREVDWNKNKVLLSKTDKHGTILYANEDFIDVSGYDEFELIGQPHSIVR
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEECCCCCCEEECCCCHHHHC
HPDMPKVIFKFLWDSIKSSENIHVIIKNMAKTGRYYWVVTDFKIVADTNGDGDIVGYFGT
CCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCEEEEEEEEEEEEECCCCCCEEEECCC
RKSVPEPIITKFIEPLYKKLLQIEQTSGIIASEEYLVGFLEERKKTYMEYVDHLIATGKD
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DKNKVSKGLFSGLFDKTPPKK
CHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDTRFTRPTPSDREVDWNKNKVLLSKTDKHGTILYANEDFIDVSGYDEFELIGQPHSIVR
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEECCCCCCEEECCCCHHHHC
HPDMPKVIFKFLWDSIKSSENIHVIIKNMAKTGRYYWVVTDFKIVADTNGDGDIVGYFGT
CCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCEEEEEEEEEEEEECCCCCCEEEECCC
RKSVPEPIITKFIEPLYKKLLQIEQTSGIIASEEYLVGFLEERKKTYMEYVDHLIATGKD
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DKNKVSKGLFSGLFDKTPPKK
CHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]