| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is recG [H]
Identifier: 146300684
GI number: 146300684
Start: 3477365
End: 3479473
Strand: Direct
Name: recG [H]
Synonym: Fjoh_2935
Alternate gene names: 146300684
Gene position: 3477365-3479473 (Clockwise)
Preceding gene: 146300680
Following gene: 146300688
Centisome position: 57.04
GC content: 34.99
Gene sequence:
>2109_bases ATGTCTAATAATCTTCTTGAAACTCCTATCGAATACTTAAAAGGTGTTGGCCCAAGCCGTGGTCAATTGCTTCGTAAGGA ATTAGGAATTCATAAATATGGAGATTTAGTAAATTTTTATCCAAATCGATATATAGACAGAACTCGTTATTATAAAATTA ATGAGCTTCAAAACACCGGATCTGAAGTTCAGATTATTGGAAAAATTATCAATATAAAAACAGTCGAATTTGCTAAGAAT AAAAAACGTCTTGTGGCTTCTTTTGTTGATGATACAGGACAAATTGAACTTAACTGGTTTCAGGGTCATAAATGGATTCG TGAAAGTTTAAAACTTAATGAACCGCTGGTTATTTTTGGGAAATGTTCATTATACGGAAGTCAGTTCAGCATGGCGCATC CGGAAATTGAATTGTTAAGCGAACACGAAAAAAGTCTTCGTTCTGCCATGCAGCCTGTTTATCCTTCTACAGAAACCCTT ACAAACAGAGGAATTTCTAACAGAACAATAAACAAAATGATGGAACAGTTGTTTATTGAAACCGGAGCTTTGTTTACAGA AACTTTTCCGCCTTATTTACTTGAAGAAGTAAAACTGATCTCAAAAAGAGCCGCTTTATTTAACATACATTTTCCTAAAA GTGCCGATGCTTTGGCGAAAGCACAATTTAGATTGAAGTTTGAAGAATTGTTTTTTATTCAGCTGCAGTTAATTACTAAA AACCTAATTAGAAAACATAAAATTAAAGGTCATCCTTTTACAAAAGTGGGTGAACTTTTTAATGAATTTTATCAAAATCA TCTTCCATTTGACTTAACAAATGCTCAAAAAAGGGTAATAAAAGAAATTCGTTCTGATATGGGAAGTAATGCCCAAATGA ACCGATTACTGCAGGGAGATGTAGGTTCTGGAAAAACAATTGTAGGTTTTATGAGCATGCTTTTGGCTATAGATAATGGT TTTCAGGCTTGTTTGATGGCGCCGACAGAAATTTTAGCAAATCAGCATTTTATTGGTTTATCTGAGTTTGCTAATACTTT AAACATTAGTATAAAAATCCTAACCGGTTCAACCAAAACTTCTGAAAGAAGAATTATTCATGAAGATCTCGAAAATGGAA GTCTTCAGATTTTAATAGGAACTCACGCTTTATTAGAAGATAAAGTTAAATTTAAGAATTTAGGTCTTGCTATTATTGAT GAGCAGCATCGTTTTGGGGTAGAACAAAGATCTAAATTGTGGAAAAAAAATGAGATTCCGCCGCACGTTTTGGTCATGAC TGCAACGCCAATTCCGAGAACTTTAGCTATGAGTTTATACGGTGATCTGGATGTTTCTGTAATTGATGAACTGCCGCCGG GAAGAAAACCAATTCAAACCGTTCATCGATTTGATACAAACCGTTTAAAAGTCTGGAAATTCCTGCGTGATGAAATTGCG AAAGGCAGACAGATTTATATTGTTTATCCATTAATTCAGGAATCTGAAAAAATGGATTACAAAGATTTGATGGATGGTTA CGAAAGTATTTCAAGAGATTTTCCGCTGCCGCAATATTCAATTTCAATTGTTCATGGAAAGATGAAACCTGCGGATAAAG ATGCCGAAATGAAACGTTTCTCAGAAGGAAAAACAAATATTATGGTGGCTACAACCGTAATTGAAGTTGGTGTAAATGTG CCTAATGCCAGTGTTATGATTATTGAAAGTGCCGAACGTTTTGGTCTTTCGCAGCTGCATCAGCTTAGAGGACGTGTTGG ACGTGGTGCTGAACAGAGTTATTGTATTTTAATGACTGGACATAAATTAAGCTCTGACAGTAAAACCCGAATGGAAACTA TGGTGCAGACCAATGATGGTTTTGAAATTGCCGAAGTCGATCTCAAACTTCGCGGTCCCGGAGATTTAATGGGAACGCAG CAAAGCGGTGTTTTAAACCTGCAGATTGCTGATATTGTAAAAGACAGAGAGATTTTGTCTTTCGCCAGAAATTATGCCCT GAAAATCTTAAAAGAAGATCCACCGTTACAAAAACCCGAACACGCTATTTTAAAAACTGTTTTCTTAGAATTAACGAAAA GAAAAAATATTTGGAATTATATTTCTTAG
Upstream 100 bases:
>100_bases TTCTAAATAAAAGAGCATAGAACAAAGAATATAGATTATTTTTATTTAAAATCAACAATCTAAAATCTATAGTCTAAAAA TCTAAAATTCAAAATTCTTC
Downstream 100 bases:
>100_bases TCGCTGGCGCTCTAGGAAGGAACAAAGACACAAAGGTGCAAAGTCACAAAGTTTTTTAATGAGTATCATTCCGAGGAAAG TCGAAGGCTAAAAAACCTTT
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 702; Mature: 701
Protein sequence:
>702_residues MSNNLLETPIEYLKGVGPSRGQLLRKELGIHKYGDLVNFYPNRYIDRTRYYKINELQNTGSEVQIIGKIINIKTVEFAKN KKRLVASFVDDTGQIELNWFQGHKWIRESLKLNEPLVIFGKCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETL TNRGISNRTINKMMEQLFIETGALFTETFPPYLLEEVKLISKRAALFNIHFPKSADALAKAQFRLKFEELFFIQLQLITK NLIRKHKIKGHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSDMGSNAQMNRLLQGDVGSGKTIVGFMSMLLAIDNG FQACLMAPTEILANQHFIGLSEFANTLNISIKILTGSTKTSERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIID EQHRFGVEQRSKLWKKNEIPPHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDTNRLKVWKFLRDEIA KGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVHGKMKPADKDAEMKRFSEGKTNIMVATTVIEVGVNV PNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGHKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQ QSGVLNLQIADIVKDREILSFARNYALKILKEDPPLQKPEHAILKTVFLELTKRKNIWNYIS
Sequences:
>Translated_702_residues MSNNLLETPIEYLKGVGPSRGQLLRKELGIHKYGDLVNFYPNRYIDRTRYYKINELQNTGSEVQIIGKIINIKTVEFAKN KKRLVASFVDDTGQIELNWFQGHKWIRESLKLNEPLVIFGKCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETL TNRGISNRTINKMMEQLFIETGALFTETFPPYLLEEVKLISKRAALFNIHFPKSADALAKAQFRLKFEELFFIQLQLITK NLIRKHKIKGHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSDMGSNAQMNRLLQGDVGSGKTIVGFMSMLLAIDNG FQACLMAPTEILANQHFIGLSEFANTLNISIKILTGSTKTSERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIID EQHRFGVEQRSKLWKKNEIPPHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDTNRLKVWKFLRDEIA KGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVHGKMKPADKDAEMKRFSEGKTNIMVATTVIEVGVNV PNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGHKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQ QSGVLNLQIADIVKDREILSFARNYALKILKEDPPLQKPEHAILKTVFLELTKRKNIWNYIS >Mature_701_residues SNNLLETPIEYLKGVGPSRGQLLRKELGIHKYGDLVNFYPNRYIDRTRYYKINELQNTGSEVQIIGKIINIKTVEFAKNK KRLVASFVDDTGQIELNWFQGHKWIRESLKLNEPLVIFGKCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETLT NRGISNRTINKMMEQLFIETGALFTETFPPYLLEEVKLISKRAALFNIHFPKSADALAKAQFRLKFEELFFIQLQLITKN LIRKHKIKGHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSDMGSNAQMNRLLQGDVGSGKTIVGFMSMLLAIDNGF QACLMAPTEILANQHFIGLSEFANTLNISIKILTGSTKTSERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIIDE QHRFGVEQRSKLWKKNEIPPHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDTNRLKVWKFLRDEIAK GRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVHGKMKPADKDAEMKRFSEGKTNIMVATTVIEVGVNVP NASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTGHKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQQ SGVLNLQIADIVKDREILSFARNYALKILKEDPPLQKPEHAILKTVFLELTKRKNIWNYIS
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=691, Percent_Identity=39.2185238784371, Blast_Score=441, Evalue=1e-125, Organism=Escherichia coli, GI1787357, Length=391, Percent_Identity=37.5959079283887, Blast_Score=260, Evalue=2e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 80088; Mature: 79957
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNLLETPIEYLKGVGPSRGQLLRKELGIHKYGDLVNFYPNRYIDRTRYYKINELQNTG CCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCHHHHCCCHHCCCCCCEEEHHHHCCC SEVQIIGKIINIKTVEFAKNKKRLVASFVDDTGQIELNWFQGHKWIRESLKLNEPLVIFG CCEEEEEEHHEEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEEEE KCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETLTNRGISNRTINKMMEQLFIE EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH TGALFTETFPPYLLEEVKLISKRAALFNIHFPKSADALAKAQFRLKFEELFFIQLQLITK CCCHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHEEHHHHHHHHHHHHHH NLIRKHKIKGHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSDMGSNAQMNRLLQGD HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC VGSGKTIVGFMSMLLAIDNGFQACLMAPTEILANQHFIGLSEFANTLNISIKILTGSTKT CCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCEEHHHHCCEEEEEEEEEECCCCC SERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIIDEQHRFGVEQRSKLWKKNEIP CHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCEEEEECHHHCCHHHHHHHHHCCCCC PHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDTNRLKVWKFLRDEIA CEEEEEECCCCCHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC KGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVHGKMKPADKDAEMKRF CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHH SEGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTG CCCCCEEEEEEEEEEECCCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCEEEEEEC HKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQQSGVLNLQIADIVKDREILS CCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHH FARNYALKILKEDPPLQKPEHAILKTVFLELTKRKNIWNYIS HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SNNLLETPIEYLKGVGPSRGQLLRKELGIHKYGDLVNFYPNRYIDRTRYYKINELQNTG CCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHCCHHHHCCCHHCCCCCCEEEHHHHCCC SEVQIIGKIINIKTVEFAKNKKRLVASFVDDTGQIELNWFQGHKWIRESLKLNEPLVIFG CCEEEEEEHHEEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEEEE KCSLYGSQFSMAHPEIELLSEHEKSLRSAMQPVYPSTETLTNRGISNRTINKMMEQLFIE EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH TGALFTETFPPYLLEEVKLISKRAALFNIHFPKSADALAKAQFRLKFEELFFIQLQLITK CCCHHHCCCCHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHEEHHHHHHHHHHHHHH NLIRKHKIKGHPFTKVGELFNEFYQNHLPFDLTNAQKRVIKEIRSDMGSNAQMNRLLQGD HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC VGSGKTIVGFMSMLLAIDNGFQACLMAPTEILANQHFIGLSEFANTLNISIKILTGSTKT CCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCCEEHHHHCCEEEEEEEEEECCCCC SERRIIHEDLENGSLQILIGTHALLEDKVKFKNLGLAIIDEQHRFGVEQRSKLWKKNEIP CHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCEEEEECHHHCCHHHHHHHHHCCCCC PHVLVMTATPIPRTLAMSLYGDLDVSVIDELPPGRKPIQTVHRFDTNRLKVWKFLRDEIA CEEEEEECCCCCHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC KGRQIYIVYPLIQESEKMDYKDLMDGYESISRDFPLPQYSISIVHGKMKPADKDAEMKRF CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHH SEGKTNIMVATTVIEVGVNVPNASVMIIESAERFGLSQLHQLRGRVGRGAEQSYCILMTG CCCCCEEEEEEEEEEECCCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCEEEEEEC HKLSSDSKTRMETMVQTNDGFEIAEVDLKLRGPGDLMGTQQSGVLNLQIADIVKDREILS CCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHH FARNYALKILKEDPPLQKPEHAILKTVFLELTKRKNIWNYIS HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]