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The map label for this gene is 146300645

Identifier: 146300645

GI number: 146300645

Start: 3439432

End: 3440043

Strand: Reverse

Name: 146300645

Synonym: Fjoh_2896

Alternate gene names: NA

Gene position: 3440043-3439432 (Counterclockwise)

Preceding gene: 146300646

Following gene: 146300644

Centisome position: 56.42

GC content: 34.31

Gene sequence:

>612_bases
ATGAAGACCCGAATCCTACCAGCCAATTTAATTGATGACAATACACTTTGGAATGATTTAATATTAGGAGATGAGAAATC
ATTCTCACTATTATTTGAGCGTTATTATGGTGATCTGGTCAGTTACGGGAATTCACTTTCGCCTTATGCTGAAAAAGTAC
AGGATTGTGTTCAGGATGTTTTTACGGATATTTGGGTATATCGCAGTTCTTTACAGAGCAGTGTAGTAGTAAAAGCCTAT
TTATTATCGAGCGTTCGAAAAAGAATTGCACGATTATTTGAACGTGATCATATTTTTAGAAAAACTGCAAGCACAGACGA
TATTGCTTTTCTTTTGGAATTTTCTGTAGAAAATGATCTTTTGGATGATGATTATGCAACAAAAGAAAAAGTTTCTTATC
TAAATAAATTGTTAAACGAATTACCGGCAAGACAAAAAGAAGCTCTATATCTTCGTTATCATCAGGCACTTTCGGTTGAG
CAGATAGCCGAGATGCTGGATGTTAATTATCAATCAGCAAGTAATTTACTTCACCGTGGTTTACTTACTCTTCGTAAAGA
ATGGAAGGGTAGTTTTGCCTTAATTACTCTATTGTTTTCAAGCTCTCTTTAA

Upstream 100 bases:

>100_bases
TGCTTTTATATATTTATCGAACAATTAAAAGTAATAATGTTAAAATAGTGTATTTTTTACATTAAGAAAATTAATGCTTT
TAAAGTTATAATCCACTATT

Downstream 100 bases:

>100_bases
AAAAAGTTAAAAAAGTTTAAAAAAAATCATAATTTGGTGAGTATATAATAAAGAAACTGTCCTCTATGTTTTTGTAACCT
TATTTTTAGATGCAAAAACG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF-Type Sigma Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-70 Region 4 Subfamily; RNA Polymerase Sigma; RNA Polymerase Sigma Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MKTRILPANLIDDNTLWNDLILGDEKSFSLLFERYYGDLVSYGNSLSPYAEKVQDCVQDVFTDIWVYRSSLQSSVVVKAY
LLSSVRKRIARLFERDHIFRKTASTDDIAFLLEFSVENDLLDDDYATKEKVSYLNKLLNELPARQKEALYLRYHQALSVE
QIAEMLDVNYQSASNLLHRGLLTLRKEWKGSFALITLLFSSSL

Sequences:

>Translated_203_residues
MKTRILPANLIDDNTLWNDLILGDEKSFSLLFERYYGDLVSYGNSLSPYAEKVQDCVQDVFTDIWVYRSSLQSSVVVKAY
LLSSVRKRIARLFERDHIFRKTASTDDIAFLLEFSVENDLLDDDYATKEKVSYLNKLLNELPARQKEALYLRYHQALSVE
QIAEMLDVNYQSASNLLHRGLLTLRKEWKGSFALITLLFSSSL
>Mature_203_residues
MKTRILPANLIDDNTLWNDLILGDEKSFSLLFERYYGDLVSYGNSLSPYAEKVQDCVQDVFTDIWVYRSSLQSSVVVKAY
LLSSVRKRIARLFERDHIFRKTASTDDIAFLLEFSVENDLLDDDYATKEKVSYLNKLLNELPARQKEALYLRYHQALSVE
QIAEMLDVNYQSASNLLHRGLLTLRKEWKGSFALITLLFSSSL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23493; Mature: 23493

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRILPANLIDDNTLWNDLILGDEKSFSLLFERYYGDLVSYGNSLSPYAEKVQDCVQDV
CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
FTDIWVYRSSLQSSVVVKAYLLSSVRKRIARLFERDHIFRKTASTDDIAFLLEFSVENDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
LDDDYATKEKVSYLNKLLNELPARQKEALYLRYHQALSVEQIAEMLDVNYQSASNLLHRG
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
LLTLRKEWKGSFALITLLFSSSL
HHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKTRILPANLIDDNTLWNDLILGDEKSFSLLFERYYGDLVSYGNSLSPYAEKVQDCVQDV
CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
FTDIWVYRSSLQSSVVVKAYLLSSVRKRIARLFERDHIFRKTASTDDIAFLLEFSVENDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
LDDDYATKEKVSYLNKLLNELPARQKEALYLRYHQALSVEQIAEMLDVNYQSASNLLHRG
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH
LLTLRKEWKGSFALITLLFSSSL
HHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA