| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300463
Identifier: 146300463
GI number: 146300463
Start: 3231084
End: 3233075
Strand: Direct
Name: 146300463
Synonym: Fjoh_2713
Alternate gene names: NA
Gene position: 3231084-3233075 (Clockwise)
Preceding gene: 146300462
Following gene: 146300464
Centisome position: 53.0
GC content: 35.34
Gene sequence:
>1992_bases ATGAATTATCAAAATAAACTTCATTGTATAATGTCCCTTTGTCTGGCAGGTTTTACATCAATTGCCTTTGCACAAAAAAT TGAATTAAAAAGTAATTGGACATATCGTGAAGAAAAAACACAAAAATGGTATACGGCCAGCGTTCCGGGAGAAATCCATA CCGATTTGCTAAACAGCAAATTAATACCAGACCCATTTTACAGAGATAACGAAAAAAAACTGCAGTGGATCGAACGTAAA AACTGGGAATACAAAACTGCTTTTCAGGTTACGGCAAATATGCTGAAAAAGAAAAATACAGAATTAGTTTTTGACGGATT AGATACTTACGCAGCTGTTTATGTAAACAATCAGCTGGTTTTAAAAGCCGATAATATGTTCCGTCAATGGCGGGTTGATG TAAAAAAAGTCTTGAAATCAGGAAATAATGATTTACGAATCGTATTTCAATCGGCACAAAATGTGGTAGATTCATTGGCA AAAAAAGATTACCCATTTGTAATTCCAGACAATCCGCGTACTTATGTACGCAAAGCCCAATACCATTTTGGCTGGGATTG GGGACCAAAATTCACAACCTGCGGCATATGGAAAACACCAAGATTTGAAGCTTATGATGAAAAAGAACCTGAGAAACCGT ATGTATTAACTCGAAAAATCGAATTAATACAAGACAAAGACAGTCTTGGCAGTTCGTTTTATTTTAAAATTGACGGAAAC CCGGTTTATATGAAAGGAGCTAATTATATTCCATCTGATGCTTTTCTTTCAAGAGTATCTAAAAAAGAATATGAAAAAAT AGTTTTATCTGCCAAAGAGGCCAATATGAATATGCTTCGCGTTTGGGGCGGCGGTATTTATGAAGACGATTATTTCTACG ATTTATGTGATAAATACGGTATAAATGTCTGGCAGGATTTTATGTTTGCAGGTACTATGGTTCCCGGAGACGATGCTTTT TTTGAAAATGTAAAAAAAGAAGTTCAATATCAGGTAAAAAGACTGCGTCATCATCCAAGTATTGTTTTATGGTGCGGCAA CAACGAATCTGATGAAGCTTTTAAAAACTGGGGCTGGATGAAAAATTTCAAAATTTCAAAGCAGGATTCCATTCGTTTGT GGAAAGATTACACACGTTTATTTCATGACAGTATTCCGAAATGGGTAAAAGAAGTCGATGGTAAACGTCCGTATTTAAGC TCTTCACCATTATACCATTGGTCAAAACCAAAAAGCGTAACCGAAGGAGACAGCCATTATTGGGGAATCTGGTGGGGATT GGAAGATATTGAAGCCGTACAGAAAAAAACGGGACGATTTGTGAGCGAATACGGAATGCTGTCGATGCCAAATTATTCGT CTGTAGAAGTATTTACTCTGCCTGAAGACCGATATTTATATTCGGATATAGTATTGGCGCATCAAAAATCTGGAAAAGGA TTTGAAAAGCTGGATTCCTATTTAAACAGGTATTTTATCGATTCGGCTAAAATAAAAAACATAAGTTTAGAAGATTATAC CTATTTAACGCAATGTCTTCAATACTATGTTGTTAAAAATATCGCAGGCACACATCGTTCTAAAGAACCGTACAATATGG GAACTTTAATCTGGCAGTTAAACGACTGCTGGCCAACAGCAAGCTGGAGTATTACAGATTATTATAACCGCGAACCACGA GCTTCGTGGTATGCCATAAGAGAAGCGTACAGAGACGATGTAAAACCAGAAACTGATTTTATACGCCCAAGAGATTTATC TTTAGAAGATCCAAAAATCAACTGGGAAATAAAAGGAAATAACATAATTATAAAAGCTCTGAAAATGGCAAAATACGTTT ACATCTCTATGAAAGGATATAATGGAAAATGGAGCGATAATTATTTTGATCTAAAAGCAGGAGAAGAAAAAACAATTTCG TTTGAAGGGAAAATAACGAAGCCAGAGATTAAGATTTATTCTTTGTTTGAGGTTTTGGAAAAGTATAAATAA
Upstream 100 bases:
>100_bases GAATGATTTAGTACATCCTTTTCCTTCTCGAAACTGCCAATAGTCCGAATTACTTACCTTTTTACTAATTTTAGAAGGTA TTAATATATTACTCAGTAAA
Downstream 100 bases:
>100_bases AGTTACAAAGGTTCAAAGAGACAAAGGGGCAATGTTTTTTTTAAAACAGTTTAGTCTATCTGTAGAAATTAAAAAACGTC AGCGTCAATCAGTTTAATCC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Mannosidase Protein; Glycoside Hydrolase; Mannosidase; Glycosyl Hydrolase; Glycoside Hydrolase Family 2 Protein; Glycosidase; O-Glycosyl Hydrolase; Coagulation Factor 5/8 Type Domain Protein; Glycoside Hydrolase Family 2 TIM Barrel; Beta-Galactosidase/Beta-Glucuronidase; Beta-Glucuronidase; Exported Glycosyl Hydrolase; Mannosylglycoprotein Endo-Beta-Mannosidase; Beta-Mannosidase-Related Protein; Beta-Galactosidase/Beta- Glucuronidase Family Protein; Beta-Mannosidase Man2A; BETA-Mannosidase Protein; Beta-Galactosidase/Beta; Exported Beta-Mannosidase-Like Glycosidase; Beta-D-Mannosidase
Number of amino acids: Translated: 663; Mature: 663
Protein sequence:
>663_residues MNYQNKLHCIMSLCLAGFTSIAFAQKIELKSNWTYREEKTQKWYTASVPGEIHTDLLNSKLIPDPFYRDNEKKLQWIERK NWEYKTAFQVTANMLKKKNTELVFDGLDTYAAVYVNNQLVLKADNMFRQWRVDVKKVLKSGNNDLRIVFQSAQNVVDSLA KKDYPFVIPDNPRTYVRKAQYHFGWDWGPKFTTCGIWKTPRFEAYDEKEPEKPYVLTRKIELIQDKDSLGSSFYFKIDGN PVYMKGANYIPSDAFLSRVSKKEYEKIVLSAKEANMNMLRVWGGGIYEDDYFYDLCDKYGINVWQDFMFAGTMVPGDDAF FENVKKEVQYQVKRLRHHPSIVLWCGNNESDEAFKNWGWMKNFKISKQDSIRLWKDYTRLFHDSIPKWVKEVDGKRPYLS SSPLYHWSKPKSVTEGDSHYWGIWWGLEDIEAVQKKTGRFVSEYGMLSMPNYSSVEVFTLPEDRYLYSDIVLAHQKSGKG FEKLDSYLNRYFIDSAKIKNISLEDYTYLTQCLQYYVVKNIAGTHRSKEPYNMGTLIWQLNDCWPTASWSITDYYNREPR ASWYAIREAYRDDVKPETDFIRPRDLSLEDPKINWEIKGNNIIIKALKMAKYVYISMKGYNGKWSDNYFDLKAGEEKTIS FEGKITKPEIKIYSLFEVLEKYK
Sequences:
>Translated_663_residues MNYQNKLHCIMSLCLAGFTSIAFAQKIELKSNWTYREEKTQKWYTASVPGEIHTDLLNSKLIPDPFYRDNEKKLQWIERK NWEYKTAFQVTANMLKKKNTELVFDGLDTYAAVYVNNQLVLKADNMFRQWRVDVKKVLKSGNNDLRIVFQSAQNVVDSLA KKDYPFVIPDNPRTYVRKAQYHFGWDWGPKFTTCGIWKTPRFEAYDEKEPEKPYVLTRKIELIQDKDSLGSSFYFKIDGN PVYMKGANYIPSDAFLSRVSKKEYEKIVLSAKEANMNMLRVWGGGIYEDDYFYDLCDKYGINVWQDFMFAGTMVPGDDAF FENVKKEVQYQVKRLRHHPSIVLWCGNNESDEAFKNWGWMKNFKISKQDSIRLWKDYTRLFHDSIPKWVKEVDGKRPYLS SSPLYHWSKPKSVTEGDSHYWGIWWGLEDIEAVQKKTGRFVSEYGMLSMPNYSSVEVFTLPEDRYLYSDIVLAHQKSGKG FEKLDSYLNRYFIDSAKIKNISLEDYTYLTQCLQYYVVKNIAGTHRSKEPYNMGTLIWQLNDCWPTASWSITDYYNREPR ASWYAIREAYRDDVKPETDFIRPRDLSLEDPKINWEIKGNNIIIKALKMAKYVYISMKGYNGKWSDNYFDLKAGEEKTIS FEGKITKPEIKIYSLFEVLEKYK >Mature_663_residues MNYQNKLHCIMSLCLAGFTSIAFAQKIELKSNWTYREEKTQKWYTASVPGEIHTDLLNSKLIPDPFYRDNEKKLQWIERK NWEYKTAFQVTANMLKKKNTELVFDGLDTYAAVYVNNQLVLKADNMFRQWRVDVKKVLKSGNNDLRIVFQSAQNVVDSLA KKDYPFVIPDNPRTYVRKAQYHFGWDWGPKFTTCGIWKTPRFEAYDEKEPEKPYVLTRKIELIQDKDSLGSSFYFKIDGN PVYMKGANYIPSDAFLSRVSKKEYEKIVLSAKEANMNMLRVWGGGIYEDDYFYDLCDKYGINVWQDFMFAGTMVPGDDAF FENVKKEVQYQVKRLRHHPSIVLWCGNNESDEAFKNWGWMKNFKISKQDSIRLWKDYTRLFHDSIPKWVKEVDGKRPYLS SSPLYHWSKPKSVTEGDSHYWGIWWGLEDIEAVQKKTGRFVSEYGMLSMPNYSSVEVFTLPEDRYLYSDIVLAHQKSGKG FEKLDSYLNRYFIDSAKIKNISLEDYTYLTQCLQYYVVKNIAGTHRSKEPYNMGTLIWQLNDCWPTASWSITDYYNREPR ASWYAIREAYRDDVKPETDFIRPRDLSLEDPKINWEIKGNNIIIKALKMAKYVYISMKGYNGKWSDNYFDLKAGEEKTIS FEGKITKPEIKIYSLFEVLEKYK
Specific function: Unknown
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI84798622, Length=360, Percent_Identity=38.6111111111111, Blast_Score=228, Evalue=1e-59, Organism=Caenorhabditis elegans, GI17550784, Length=384, Percent_Identity=30.9895833333333, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI24643840, Length=354, Percent_Identity=32.2033898305085, Blast_Score=172, Evalue=5e-43, Organism=Drosophila melanogaster, GI24643838, Length=375, Percent_Identity=31.4666666666667, Blast_Score=172, Evalue=8e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78328; Mature: 78328
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYQNKLHCIMSLCLAGFTSIAFAQKIELKSNWTYREEKTQKWYTASVPGEIHTDLLNSK CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCC LIPDPFYRDNEKKLQWIERKNWEYKTAFQVTANMLKKKNTELVFDGLDTYAAVYVNNQLV CCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCEEE LKADNMFRQWRVDVKKVLKSGNNDLRIVFQSAQNVVDSLAKKDYPFVIPDNPRTYVRKAQ EEEHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCHHHHHHCC YHFGWDWGPKFTTCGIWKTPRFEAYDEKEPEKPYVLTRKIELIQDKDSLGSSFYFKIDGN EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCC PVYMKGANYIPSDAFLSRVSKKEYEKIVLSAKEANMNMLRVWGGGIYEDDYFYDLCDKYG EEEEECCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCC INVWQDFMFAGTMVPGDDAFFENVKKEVQYQVKRLRHHPSIVLWCGNNESDEAFKNWGWM CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCC KNFKISKQDSIRLWKDYTRLFHDSIPKWVKEVDGKRPYLSSSPLYHWSKPKSVTEGDSHY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEE WGIWWGLEDIEAVQKKTGRFVSEYGMLSMPNYSSVEVFTLPEDRYLYSDIVLAHQKSGKG EEEEECHHHHHHHHHHHCCHHHHCCCEECCCCCCEEEEECCCCCEEHHHEEEEECCCCCC FEKLDSYLNRYFIDSAKIKNISLEDYTYLTQCLQYYVVKNIAGTHRSKEPYNMGTLIWQL HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE NDCWPTASWSITDYYNREPRASWYAIREAYRDDVKPETDFIRPRDLSLEDPKINWEIKGN ECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECC NIIIKALKMAKYVYISMKGYNGKWSDNYFDLKAGEEKTISFEGKITKPEIKIYSLFEVLE CEEEEEEHEEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCEECCCCCHHHHHHHHHH KYK HCC >Mature Secondary Structure MNYQNKLHCIMSLCLAGFTSIAFAQKIELKSNWTYREEKTQKWYTASVPGEIHTDLLNSK CCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCC LIPDPFYRDNEKKLQWIERKNWEYKTAFQVTANMLKKKNTELVFDGLDTYAAVYVNNQLV CCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCEEE LKADNMFRQWRVDVKKVLKSGNNDLRIVFQSAQNVVDSLAKKDYPFVIPDNPRTYVRKAQ EEEHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCHHHHHHCC YHFGWDWGPKFTTCGIWKTPRFEAYDEKEPEKPYVLTRKIELIQDKDSLGSSFYFKIDGN EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCC PVYMKGANYIPSDAFLSRVSKKEYEKIVLSAKEANMNMLRVWGGGIYEDDYFYDLCDKYG EEEEECCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCCCCCHHHHHHHHCC INVWQDFMFAGTMVPGDDAFFENVKKEVQYQVKRLRHHPSIVLWCGNNESDEAFKNWGWM CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCC KNFKISKQDSIRLWKDYTRLFHDSIPKWVKEVDGKRPYLSSSPLYHWSKPKSVTEGDSHY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEE WGIWWGLEDIEAVQKKTGRFVSEYGMLSMPNYSSVEVFTLPEDRYLYSDIVLAHQKSGKG EEEEECHHHHHHHHHHHCCHHHHCCCEECCCCCCEEEEECCCCCEEHHHEEEEECCCCCC FEKLDSYLNRYFIDSAKIKNISLEDYTYLTQCLQYYVVKNIAGTHRSKEPYNMGTLIWQL HHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE NDCWPTASWSITDYYNREPRASWYAIREAYRDDVKPETDFIRPRDLSLEDPKINWEIKGN ECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECC NIIIKALKMAKYVYISMKGYNGKWSDNYFDLKAGEEKTISFEGKITKPEIKIYSLFEVLE CEEEEEEHEEEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCEECCCCCHHHHHHHHHH KYK HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA