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The map label for this gene is xerD [H]

Identifier: 146300426

GI number: 146300426

Start: 3186015

End: 3186887

Strand: Direct

Name: xerD [H]

Synonym: Fjoh_2675

Alternate gene names: 146300426

Gene position: 3186015-3186887 (Clockwise)

Preceding gene: 146300425

Following gene: 146300428

Centisome position: 52.26

GC content: 40.32

Gene sequence:

>873_bases
ATGCTTATGACTAAACCAACAATTGAAAATTTCCTGCTCCAAAGTTACAGCAAGCAGACTGTCGACAGCTATATGTTTGC
CATTAACCACTTTTTGAAGCGTAATCCTAAAGCCAAACGATACAAATACAGGAACATAGTGCAGTATATGGAAGAAATCA
GCCAAGAACAGCCTAACGGCAAATATCGGGTTGTCATTTTATCAGCTATAAAGAAATACTACGATTATCTGATTATGAGC
GGTTACAGAACAGACCATCCATGCAGAAAGCTCAACATCAAAGTCAACAGTAATCAGGCTGTTCAAGTTCAGGATTTGTT
CAGTTCCGAAGAGCTGGAGCTTCTTCTGGCACGTGAGAACCGTTACGAGAATTTGGACACCAGAAACAGCGTTCTTTTAA
ACCTGTTGATTTATCAAGGTTTGACCAGCGATGAAATCATAAAGCTGAATGTTCAGGACATTGATTTGGATGAAGGAACA
ATCTACATCAAAGCATCCAGTAATCTGAACAGACGAAAATTATCATTGCTAGCAAAACAGATACTGCTGTTTTCCAAATA
TTTAAACGAAGCCAGACCCAAAATGCTCAGAACCTCAACCGATAAGCTGATTATCGGCAAGCTGGGAAAGCCTATCACCG
TTAACAGCATTCATGCAATGATTGAGCCATTAAAGCCTTTATTTCCAGATAAGAAGCTCAACCCAAGAACTATCAGAATG
AGCGTTATCTGCAACTGGCTCAATGAAAAGAAACTGCCATTGGAACATGTGCAGGAGCTTGCTGGACATAAGTGGCCTGG
AACAACAGAGAAGTACATCAAAGCAGACAGCCAGCAACAGCGTGAGCTGATTAATAAATACTTTCCGATTTGA

Upstream 100 bases:

>100_bases
ATTTCATACGTGGATTTTTAGGTCATTCAGGAATCAATACAACCTATATCTATGCAGTTCGGAACAAAAAACGAAAACCA
GTAACAGCCTTTTAATCAAC

Downstream 100 bases:

>100_bases
CACAAAAAAAAGAGGGATTTCCCTCTTTTATAGATAGTAATGCTATTTGCATTTGTCAATTTCAGCATCAACATAAGAGC
GCAGTTCTTCAACATAGCTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MLMTKPTIENFLLQSYSKQTVDSYMFAINHFLKRNPKAKRYKYRNIVQYMEEISQEQPNGKYRVVILSAIKKYYDYLIMS
GYRTDHPCRKLNIKVNSNQAVQVQDLFSSEELELLLARENRYENLDTRNSVLLNLLIYQGLTSDEIIKLNVQDIDLDEGT
IYIKASSNLNRRKLSLLAKQILLFSKYLNEARPKMLRTSTDKLIIGKLGKPITVNSIHAMIEPLKPLFPDKKLNPRTIRM
SVICNWLNEKKLPLEHVQELAGHKWPGTTEKYIKADSQQQRELINKYFPI

Sequences:

>Translated_290_residues
MLMTKPTIENFLLQSYSKQTVDSYMFAINHFLKRNPKAKRYKYRNIVQYMEEISQEQPNGKYRVVILSAIKKYYDYLIMS
GYRTDHPCRKLNIKVNSNQAVQVQDLFSSEELELLLARENRYENLDTRNSVLLNLLIYQGLTSDEIIKLNVQDIDLDEGT
IYIKASSNLNRRKLSLLAKQILLFSKYLNEARPKMLRTSTDKLIIGKLGKPITVNSIHAMIEPLKPLFPDKKLNPRTIRM
SVICNWLNEKKLPLEHVQELAGHKWPGTTEKYIKADSQQQRELINKYFPI
>Mature_290_residues
MLMTKPTIENFLLQSYSKQTVDSYMFAINHFLKRNPKAKRYKYRNIVQYMEEISQEQPNGKYRVVILSAIKKYYDYLIMS
GYRTDHPCRKLNIKVNSNQAVQVQDLFSSEELELLLARENRYENLDTRNSVLLNLLIYQGLTSDEIIKLNVQDIDLDEGT
IYIKASSNLNRRKLSLLAKQILLFSKYLNEARPKMLRTSTDKLIIGKLGKPITVNSIHAMIEPLKPLFPDKKLNPRTIRM
SVICNWLNEKKLPLEHVQELAGHKWPGTTEKYIKADSQQQRELINKYFPI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=247, Percent_Identity=24.2914979757085, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34001; Mature: 34001

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMTKPTIENFLLQSYSKQTVDSYMFAINHFLKRNPKAKRYKYRNIVQYMEEISQEQPNG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
KYRVVILSAIKKYYDYLIMSGYRTDHPCRKLNIKVNSNQAVQVQDLFSSEELELLLAREN
CEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEHHHHHCCCHHHEEEECCC
RYENLDTRNSVLLNLLIYQGLTSDEIIKLNVQDIDLDEGTIYIKASSNLNRRKLSLLAKQ
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHH
ILLFSKYLNEARPKMLRTSTDKLIIGKLGKPITVNSIHAMIEPLKPLFPDKKLNPRTIRM
HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEH
SVICNWLNEKKLPLEHVQELAGHKWPGTTEKYIKADSQQQRELINKYFPI
HHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLMTKPTIENFLLQSYSKQTVDSYMFAINHFLKRNPKAKRYKYRNIVQYMEEISQEQPNG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
KYRVVILSAIKKYYDYLIMSGYRTDHPCRKLNIKVNSNQAVQVQDLFSSEELELLLAREN
CEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEHHHHHCCCHHHEEEECCC
RYENLDTRNSVLLNLLIYQGLTSDEIIKLNVQDIDLDEGTIYIKASSNLNRRKLSLLAKQ
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHH
ILLFSKYLNEARPKMLRTSTDKLIIGKLGKPITVNSIHAMIEPLKPLFPDKKLNPRTIRM
HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEEH
SVICNWLNEKKLPLEHVQELAGHKWPGTTEKYIKADSQQQRELINKYFPI
HHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]