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The map label for this gene is xerC2 [H]

Identifier: 146300425

GI number: 146300425

Start: 3185092

End: 3186009

Strand: Direct

Name: xerC2 [H]

Synonym: Fjoh_2674

Alternate gene names: 146300425

Gene position: 3185092-3186009 (Clockwise)

Preceding gene: 146300424

Following gene: 146300426

Centisome position: 52.24

GC content: 38.56

Gene sequence:

>918_bases
ATGAAAAAAACAATACAAACACCAGCATTTCAAAATCTGCTCAATGAGTTTGACAGCTATGTAAGAGTAAAGAATTACAA
GCAAGGAAAAGGCTCAATGTACCAGAAAGCTGTATCGGAGTTCCTTATCTGGCTGGAAGATTCGGGAATTACCAATATCA
AAAGCGTAACAGGTAAAGAATCAGTGAATTACTTTGAATATCTGATAAAAAGACCCAAACTGCGAGGAAAAGGAACGCTG
GCAGGAAAGACAATAAAGTTCCATCTGTTTGCTTTAGGACTGTTTGTGTCAAATCTTCTGGAGAACAGGCACATTGAAAA
TGCATATTACATTCCAAGCTATTCGGAAGAAAACGGAAAAGCAAGAAATGCCCTGAGCGTTGAAGAAATCAGAAATATAT
ACCAGCATTGTGAGAGCGATTTACAGCGGGCTTTACTATCAGTGGCTTACGGCTGTGGGCTTCGAAGGTCGGAAATAACA
GCTTTGAATGTAAGGGATGTCATGCTCTCCAAAGGAATGCTTATTGTCAGAGACGGAAAAGGAAGCAAAAGACGTGAAGT
CCCGATGAGTGATATAGTTGTTGAATATCTCGGAAAGTATATAACCGAAGAACGTTATGAGAAATTAATCAGCGAAAACA
AAGTTCAAGATGCGTTTTTTATACATGATAGCGGAAAGCGAATGAATGGCGAATACCTCAACAACACCCTAAAGAAAATG
ATTGAACAGACCAATGATTATAAGCTCATACAGAAAGAGATAACGCTTCACTGTCTCAGACACAGCATCGCCAATCACTT
GATGGAAAAGAATGCTGGAATAGATTTCATACGTGGATTTTTAGGTCATTCAGGAATCAATACAACCTATATCTATGCAG
TTCGGAACAAAAAACGAAAACCAGTAACAGCCTTTTAA

Upstream 100 bases:

>100_bases
GAAGTCCAGTAAATACAGGCAATATAAAGCTAGTATTCACAATTTTGAAAAGTGTGCTTAAGAAGCATTTTCGAATGATG
ATTCTAAAACCAGAGAAAAG

Downstream 100 bases:

>100_bases
TCAACATGCTTATGACTAAACCAACAATTGAAAATTTCCTGCTCCAAAGTTACAGCAAGCAGACTGTCGACAGCTATATG
TTTGCCATTAACCACTTTTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKKTIQTPAFQNLLNEFDSYVRVKNYKQGKGSMYQKAVSEFLIWLEDSGITNIKSVTGKESVNYFEYLIKRPKLRGKGTL
AGKTIKFHLFALGLFVSNLLENRHIENAYYIPSYSEENGKARNALSVEEIRNIYQHCESDLQRALLSVAYGCGLRRSEIT
ALNVRDVMLSKGMLIVRDGKGSKRREVPMSDIVVEYLGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNTLKKM
IEQTNDYKLIQKEITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKRKPVTAF

Sequences:

>Translated_305_residues
MKKTIQTPAFQNLLNEFDSYVRVKNYKQGKGSMYQKAVSEFLIWLEDSGITNIKSVTGKESVNYFEYLIKRPKLRGKGTL
AGKTIKFHLFALGLFVSNLLENRHIENAYYIPSYSEENGKARNALSVEEIRNIYQHCESDLQRALLSVAYGCGLRRSEIT
ALNVRDVMLSKGMLIVRDGKGSKRREVPMSDIVVEYLGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNTLKKM
IEQTNDYKLIQKEITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKRKPVTAF
>Mature_305_residues
MKKTIQTPAFQNLLNEFDSYVRVKNYKQGKGSMYQKAVSEFLIWLEDSGITNIKSVTGKESVNYFEYLIKRPKLRGKGTL
AGKTIKFHLFALGLFVSNLLENRHIENAYYIPSYSEENGKARNALSVEEIRNIYQHCESDLQRALLSVAYGCGLRRSEIT
ALNVRDVMLSKGMLIVRDGKGSKRREVPMSDIVVEYLGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNTLKKM
IEQTNDYKLIQKEITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKRKPVTAF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=150, Percent_Identity=31.3333333333333, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789261, Length=155, Percent_Identity=31.6129032258064, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35145; Mature: 35145

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTIQTPAFQNLLNEFDSYVRVKNYKQGKGSMYQKAVSEFLIWLEDSGITNIKSVTGKE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCH
SVNYFEYLIKRPKLRGKGTLAGKTIKFHLFALGLFVSNLLENRHIENAYYIPSYSEENGK
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC
ARNALSVEEIRNIYQHCESDLQRALLSVAYGCGLRRSEITALNVRDVMLSKGMLIVRDGK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCEEEEECCC
GSKRREVPMSDIVVEYLGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNTLKKM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
IEQTNDYKLIQKEITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKRK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCC
PVTAF
CCCCC
>Mature Secondary Structure
MKKTIQTPAFQNLLNEFDSYVRVKNYKQGKGSMYQKAVSEFLIWLEDSGITNIKSVTGKE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCH
SVNYFEYLIKRPKLRGKGTLAGKTIKFHLFALGLFVSNLLENRHIENAYYIPSYSEENGK
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC
ARNALSVEEIRNIYQHCESDLQRALLSVAYGCGLRRSEITALNVRDVMLSKGMLIVRDGK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCEEEEECCC
GSKRREVPMSDIVVEYLGKYITEERYEKLISENKVQDAFFIHDSGKRMNGEYLNNTLKKM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
IEQTNDYKLIQKEITLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKRK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCC
PVTAF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]