| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300379
Identifier: 146300379
GI number: 146300379
Start: 3119733
End: 3120539
Strand: Reverse
Name: 146300379
Synonym: Fjoh_2624
Alternate gene names: NA
Gene position: 3120539-3119733 (Counterclockwise)
Preceding gene: 146300380
Following gene: 146300378
Centisome position: 51.18
GC content: 34.7
Gene sequence:
>807_bases ATGCTTTTTTTAGTTTGTTTTACAGGATTTTCTCAGCATAAAAAAGAAAAAACGAAGTTTAAGGTTATTGCTTTTTATAC TGCCAAAAACGATCAGGCGCATATAAGTTTTGTGCATGAAGCCAATAAATGGTTTCCAAAAATTGCTCAGGAAAATCATT TTGTTTACGATTCTACAAGCAATTGGAATAATTTAAATGCAAATTTTTTAGCCGATTATCAGGTTGTTCTATTTTTAGAT ACAAGACCTGAAGCTCCAGAACAGCGTGAAGCTTTTCGAAAATACATGGAAAATGGCGGCGGTTTTATCGGATTCCATTT TTCTGCCTTTGCTTTAAAAGATTCAAGTTATCCGCAAAATTGGGATTGGTATCACAATACATTTTTGGGTTCCGGCGAAT ACGGAAGTAATACCTGGAAACCAACATCGGCGGTTTTAAGAGTCGAAAACCAGCATCCGGCAACTAAAAACCTTCCTAAA ACTTTTACTTCGGCACCAAACGAATGGTACAGATGGAGCAATGATTTAACCAAAAATCCAGATATAAAAATTCTTTTGGC AATAGACGAAAGCAGTTTCCCTTTAGGAACCGGGCCAAAAGCACACGAAATCTGGCACAGCGGTTATTATCCTGTAGTCT GGACCAATACAAAATATAAAATGTTCTATGTAAATATGGGGCATAATGATATTGATTACGAAGGCAAAACCAATAAAACA CTTTCCTACACTTTTGATAATAAAACACAAAACCAATTAATTCTTAATGAATTGCTTTGGCTGGGGAATTCTAAAAAAAT TAAATAA
Upstream 100 bases:
>100_bases GTGCTGAAAATGAAATTTTAATCGAGAAAATTCCAGAATAAATTCTAAAATGACAAATTTTAATTCAATTTATTCAACAG CTAAAAAAGGTATCTTTTTG
Downstream 100 bases:
>100_bases AATGGCTGTAAAACTTTCTTCTATCATCAATACAGACGAATTATTAAAATTAAATCCGTCAGAAATCATTTTAATCGATG CCAGAGCAGGAATTAATGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Crp/FNR Family Transcriptional Regulator; Cytochrome C Class I; YVTN Beta-Propeller Repeat-Containing Protein; PKD Domain Containing Protein; Glucose/Sorbosone Dehydrogenase; 40-Residue YVTN Beta-Propeller Repeat-Containing Protein; 40-Residue YVTN Beta-Propeller Repeat Protein; Glycoside Hydrolase Family; Endo-1 4-Beta-Xylanase A; Low Quality Protein; Sigma-70 Factor
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MLFLVCFTGFSQHKKEKTKFKVIAFYTAKNDQAHISFVHEANKWFPKIAQENHFVYDSTSNWNNLNANFLADYQVVLFLD TRPEAPEQREAFRKYMENGGGFIGFHFSAFALKDSSYPQNWDWYHNTFLGSGEYGSNTWKPTSAVLRVENQHPATKNLPK TFTSAPNEWYRWSNDLTKNPDIKILLAIDESSFPLGTGPKAHEIWHSGYYPVVWTNTKYKMFYVNMGHNDIDYEGKTNKT LSYTFDNKTQNQLILNELLWLGNSKKIK
Sequences:
>Translated_268_residues MLFLVCFTGFSQHKKEKTKFKVIAFYTAKNDQAHISFVHEANKWFPKIAQENHFVYDSTSNWNNLNANFLADYQVVLFLD TRPEAPEQREAFRKYMENGGGFIGFHFSAFALKDSSYPQNWDWYHNTFLGSGEYGSNTWKPTSAVLRVENQHPATKNLPK TFTSAPNEWYRWSNDLTKNPDIKILLAIDESSFPLGTGPKAHEIWHSGYYPVVWTNTKYKMFYVNMGHNDIDYEGKTNKT LSYTFDNKTQNQLILNELLWLGNSKKIK >Mature_268_residues MLFLVCFTGFSQHKKEKTKFKVIAFYTAKNDQAHISFVHEANKWFPKIAQENHFVYDSTSNWNNLNANFLADYQVVLFLD TRPEAPEQREAFRKYMENGGGFIGFHFSAFALKDSSYPQNWDWYHNTFLGSGEYGSNTWKPTSAVLRVENQHPATKNLPK TFTSAPNEWYRWSNDLTKNPDIKILLAIDESSFPLGTGPKAHEIWHSGYYPVVWTNTKYKMFYVNMGHNDIDYEGKTNKT LSYTFDNKTQNQLILNELLWLGNSKKIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31260; Mature: 31260
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFLVCFTGFSQHKKEKTKFKVIAFYTAKNDQAHISFVHEANKWFPKIAQENHFVYDSTS CEEEEEECCCCHHCCCCCEEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCEEEECCC NWNNLNANFLADYQVVLFLDTRPEAPEQREAFRKYMENGGGFIGFHFSAFALKDSSYPQN CCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCC WDWYHNTFLGSGEYGSNTWKPTSAVLRVENQHPATKNLPKTFTSAPNEWYRWSNDLTKNP CCCHHCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCC DIKILLAIDESSFPLGTGPKAHEIWHSGYYPVVWTNTKYKMFYVNMGHNDIDYEGKTNKT CEEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCE LSYTFDNKTQNQLILNELLWLGNSKKIK EEEEECCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLFLVCFTGFSQHKKEKTKFKVIAFYTAKNDQAHISFVHEANKWFPKIAQENHFVYDSTS CEEEEEECCCCHHCCCCCEEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCEEEECCC NWNNLNANFLADYQVVLFLDTRPEAPEQREAFRKYMENGGGFIGFHFSAFALKDSSYPQN CCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCC WDWYHNTFLGSGEYGSNTWKPTSAVLRVENQHPATKNLPKTFTSAPNEWYRWSNDLTKNP CCCHHCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCC DIKILLAIDESSFPLGTGPKAHEIWHSGYYPVVWTNTKYKMFYVNMGHNDIDYEGKTNKT CEEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCE LSYTFDNKTQNQLILNELLWLGNSKKIK EEEEECCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA