Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

Click here to switch to the map view.

The map label for this gene is 146300360

Identifier: 146300360

GI number: 146300360

Start: 3099460

End: 3100110

Strand: Direct

Name: 146300360

Synonym: Fjoh_2605

Alternate gene names: NA

Gene position: 3099460-3100110 (Clockwise)

Preceding gene: 146300357

Following gene: 146300361

Centisome position: 50.84

GC content: 36.71

Gene sequence:

>651_bases
ATGTATAAAGTTTTTGTAAACGACAAACCACTTTTTTTGACAAATGAAATCTCGAAAGAAACAGATTTCCAATTGTTCTT
GTTGGAGAGTATTGATATCGAACAGCTTATAGTTAAAATTTTTCAAAATAAAATTCAAAAAGCCATTTTATATCATCCCG
ACGAAAGTGAAATAATGAAAACCCTTAAGGCCAAAATTCCGGTAAATAAAGCGGGCGGAGGCTTTGTGTATAATAAGAAA
GGCGAGGTTTTATTTATCTTTAGAAACGGAAAATGGGACCTGCCAAAAGGCGGAATCGAAAAAGGGGAAGACATTGAAGC
GACGGCTATGCGTGAGGTAGAGGAGGAGACAGGGGTAAACAAGCTTCGTATTACGAGTAAACTTCAAAAAACCTATCATA
TCTTTAAACGTAACGGAAAATACAAACTTAAAATCACACATTGGTTCGAAATGTTTTCTGATTTTGAAGGAACGCCGCAC
GGGCAGATTGAAGAAGGAATCGAAAAAGTGGCGTGGTTAAATCCTGAACAGATTAAAGAGGCTTTGACGAACTCTTATGA
AAATATCAAGTTGTTGTTTGAGGAGAAAGAAAAACCATTGGAAAAGCTTGCTTCGCCTATTGCGTATCGATCTGGGCCAG
AATCTAAATAA

Upstream 100 bases:

>100_bases
CCATGTAAAAGGATTTTCTGGATTCAATTTAATTGCATTTATTTGCAAAAGCAATTCAGCTGTTTTTTCGGCAGTATCTT
TATTAAAAATCATAGTACAA

Downstream 100 bases:

>100_bases
CGAGTAATTTTAAAATAGAAATTTAATATTTCGTGTATTAAAAATCGTACTTTTGTTTGGTAAGCAAAAAATGATTATAA
TACGTTTTGATGGTAGGATA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NUDIX Family Hydrolase; Nudix Hydrolase; AP4A Hydrolase; Hydrolase NUDIX Family; Hydrolase NUDIX Family Protein; Orotate Phosphoribosyltransferase

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MYKVFVNDKPLFLTNEISKETDFQLFLLESIDIEQLIVKIFQNKIQKAILYHPDESEIMKTLKAKIPVNKAGGGFVYNKK
GEVLFIFRNGKWDLPKGGIEKGEDIEATAMREVEEETGVNKLRITSKLQKTYHIFKRNGKYKLKITHWFEMFSDFEGTPH
GQIEEGIEKVAWLNPEQIKEALTNSYENIKLLFEEKEKPLEKLASPIAYRSGPESK

Sequences:

>Translated_216_residues
MYKVFVNDKPLFLTNEISKETDFQLFLLESIDIEQLIVKIFQNKIQKAILYHPDESEIMKTLKAKIPVNKAGGGFVYNKK
GEVLFIFRNGKWDLPKGGIEKGEDIEATAMREVEEETGVNKLRITSKLQKTYHIFKRNGKYKLKITHWFEMFSDFEGTPH
GQIEEGIEKVAWLNPEQIKEALTNSYENIKLLFEEKEKPLEKLASPIAYRSGPESK
>Mature_216_residues
MYKVFVNDKPLFLTNEISKETDFQLFLLESIDIEQLIVKIFQNKIQKAILYHPDESEIMKTLKAKIPVNKAGGGFVYNKK
GEVLFIFRNGKWDLPKGGIEKGEDIEATAMREVEEETGVNKLRITSKLQKTYHIFKRNGKYKLKITHWFEMFSDFEGTPH
GQIEEGIEKVAWLNPEQIKEALTNSYENIKLLFEEKEKPLEKLASPIAYRSGPESK

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25060; Mature: 25060

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVFVNDKPLFLTNEISKETDFQLFLLESIDIEQLIVKIFQNKIQKAILYHPDESEIMK
CEEEEECCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEECCCHHHHHH
TLKAKIPVNKAGGGFVYNKKGEVLFIFRNGKWDLPKGGIEKGEDIEATAMREVEEETGVN
HHHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
KLRITSKLQKTYHIFKRNGKYKLKITHWFEMFSDFEGTPHGQIEEGIEKVAWLNPEQIKE
HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
ALTNSYENIKLLFEEKEKPLEKLASPIAYRSGPESK
HHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYKVFVNDKPLFLTNEISKETDFQLFLLESIDIEQLIVKIFQNKIQKAILYHPDESEIMK
CEEEEECCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEECCCHHHHHH
TLKAKIPVNKAGGGFVYNKKGEVLFIFRNGKWDLPKGGIEKGEDIEATAMREVEEETGVN
HHHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
KLRITSKLQKTYHIFKRNGKYKLKITHWFEMFSDFEGTPHGQIEEGIEKVAWLNPEQIKE
HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
ALTNSYENIKLLFEEKEKPLEKLASPIAYRSGPESK
HHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA